genome.fa.s9.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  196  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58590583--58590616	3	11.7	3	87	6	52	64	0	0	35	0.94
58590644--58590685	17	2.4	17	84	15	59	64	0	7	28	1.20
58590942--58590972	2	15.5	2	100	0	62	48	0	0	51	1.00
58591114--58591140	13	2.1	13	100	0	54	77	0	0	22	0.76
58593482--58593506	13	1.9	13	100	0	50	88	0	0	12	0.53
58594068--58594110	21	2.0	21	86	8	61	30	16	25	27	1.97
58594160--58594185	13	2.0	13	100	0	52	15	46	23	15	1.83
58594404--58594666	122	2.1	125	86	6	358	37	17	15	29	1.91
58598558--58598642	27	3.1	27	87	0	107	35	11	16	36	1.85
58598848--58598883	18	2.0	18	100	0	72	33	11	16	38	1.84
58599980--58600045	24	2.7	25	71	15	66	27	33	3	36	1.72
58601125--58601149	7	3.6	7	100	0	50	60	12	0	28	1.32
58602054--58602099	18	2.5	19	75	10	51	63	4	0	32	1.14
58602286--58602339	21	2.6	21	87	0	72	35	3	25	35	1.74
58602610--58602672	29	2.1	30	83	13	78	36	15	14	33	1.88
58616388--58616417	15	2.0	15	100	0	60	20	0	26	53	1.46
58616520--58616562	17	2.5	17	85	7	52	37	4	2	55	1.33
58623124--58623188	32	2.0	32	100	0	130	44	3	9	43	1.51
58623770--58623815	17	2.7	18	77	12	53	34	0	10	54	1.36
58625560--58625597	15	2.4	17	82	13	53	47	7	0	44	1.32
58626061--58626126	30	2.2	32	89	8	102	51	0	0	48	1.00
58627903--58627945	23	2.0	22	86	9	61	48	0	2	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58628406--58628455	26	2.0	25	84	4	64	54	8	0	38	1.30
58630667--58630917	103	2.5	101	77	8	260	28	23	15	32	1.95
58633797--58633969	93	1.9	93	95	0	310	30	30	19	20	1.97
58633790--58633965	46	3.8	46	76	12	189	31	30	18	19	1.96
58639286--58639535	40	6.2	40	90	1	385	25	24	28	22	1.99
58644158--58644382	46	4.9	46	96	0	378	39	14	23	23	1.91
58644668--58644700	17	2.0	17	94	5	59	48	0	15	36	1.45
58650955--58651075	44	2.7	44	88	1	170	33	32	11	23	1.90
58651321--58651407	33	2.6	34	77	18	92	60	1	0	37	1.04
58654503--58654529	6	4.5	6	100	0	54	85	0	0	14	0.61
58654550--58654609	27	2.2	27	90	0	93	23	5	20	51	1.66
58654550--58654609	9	6.7	9	83	7	77	23	5	20	51	1.66
58657016--58657192	50	3.5	50	89	3	266	36	15	22	25	1.94
58657168--58657285	31	3.8	31	86	4	175	25	19	29	25	1.98
58657315--58657474	47	3.5	46	84	7	152	29	15	26	28	1.96
58657404--58657518	42	2.7	43	89	4	171	30	14	26	27	1.95
58660808--58660843	18	1.9	19	88	5	56	69	0	2	27	1.02
58660801--58660841	21	2.0	21	90	4	66	68	0	2	29	1.03
58661948--58661997	22	2.3	22	82	6	57	76	8	8	8	1.18
58662819--58662865	25	2.0	24	91	8	78	36	2	0	61	1.08
58663163--58663223	26	2.4	24	79	15	61	22	4	6	65	1.36
58668221--58668264	23	2.0	23	86	8	65	11	4	40	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58668984--58669021	4	9.2	4	83	16	51	78	0	0	21	0.74
58668988--58669021	9	3.9	9	96	3	61	79	0	0	20	0.73
58668984--58669022	13	3.1	13	86	13	55	79	0	0	20	0.73
58669562--58669821	143	1.8	143	80	6	321	30	13	11	44	1.80
58670377--58670437	24	2.6	25	77	15	67	29	0	1	68	0.99
58670377--58670444	24	2.8	23	80	14	66	30	0	1	67	0.99
58670393--58670443	26	2.0	26	84	7	68	31	0	1	66	1.03
58670390--58670443	28	2.0	26	85	7	72	31	0	1	66	1.02
58671266--58671329	27	2.4	27	86	0	83	20	29	29	20	1.97
58671288--58671341	27	2.0	27	88	0	81	24	31	25	18	1.97
58671382--58671420	19	2.2	19	90	9	64	51	0	0	48	1.00
58671381--58671430	19	2.5	19	80	9	55	56	0	0	44	0.99
58672502--58672530	14	2.0	15	93	6	51	37	0	0	62	0.96
58679060--58679273	31	6.7	31	67	12	78	51	3	4	40	1.39
58679110--58679160	23	2.2	23	82	6	59	47	0	7	45	1.32
58679151--58679192	17	2.5	17	80	0	57	57	2	4	35	1.33
58679300--58679342	2	21.5	2	100	0	86	51	0	0	48	1.00
58679947--58679988	21	2.0	21	90	4	68	76	0	0	23	0.79
58690256--58690298	14	2.9	14	80	12	50	58	2	2	37	1.24
58704984--58705482	64	7.8	63	76	9	337	47	10	15	25	1.78
58707085--58707358	91	3.0	91	82	4	329	33	25	15	25	1.95
58709503--58709528	13	2.0	13	100	0	52	23	15	0	61	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58710397--58710444	24	2.0	25	87	4	71	41	8	10	39	1.69
58711916--58711958	18	2.4	18	80	0	50	41	11	18	27	1.85
58732033--58732092	31	1.9	31	93	0	102	6	38	0	55	1.27
58735042--58735083	18	2.5	17	81	11	50	73	4	0	21	1.01
58735463--58735517	12	5.0	11	76	14	51	63	3	1	30	1.22
58735541--58735606	30	2.2	29	78	2	69	60	3	4	31	1.32
58735553--58735612	29	2.0	30	81	9	70	60	3	1	35	1.23
58739952--58740059	26	4.2	26	93	0	189	36	24	7	32	1.83
58747022--58747125	26	4.0	26	93	0	181	35	24	7	32	1.84
58748288--58748333	19	2.3	20	92	3	76	47	15	10	26	1.78
58752972--58753143	12	14.3	12	82	0	155	41	4	8	46	1.52
58752972--58753041	26	2.7	26	90	0	104	47	7	2	42	1.45
58752972--58753012	8	4.9	8	82	11	55	51	9	0	39	1.35
58753027--58753143	8	14.9	8	77	10	116	37	1	11	49	1.49
58752973--58753143	38	4.5	38	87	5	229	40	4	8	46	1.52
58753180--58753227	4	12.0	4	86	0	60	50	8	0	41	1.33
58753180--58753227	16	3.0	16	93	0	78	50	8	0	41	1.33
58753184--58753226	12	3.6	12	93	0	68	51	9	0	39	1.34
58755095--58755128	2	17.0	2	100	0	68	0	50	0	50	1.00
58757392--58757427	5	7.2	5	93	0	63	63	0	0	36	0.94
58760857--58760936	3	26.7	3	97	0	151	65	0	0	35	0.93
58762624--58763221	87	6.9	87	68	16	378	26	20	19	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58762626--58763221	262	2.3	262	92	0	996	26	20	19	33	1.96
58767031--58767075	18	2.5	19	78	10	58	37	6	0	55	1.26
58767091--58767173	13	5.9	14	70	21	59	32	3	0	63	1.11
58774531--58774567	15	2.5	16	87	12	53	21	24	10	43	1.84
58782771--58783208	87	5.0	86	68	14	331	34	20	19	25	1.96
58782723--58783280	175	3.2	175	90	1	886	34	20	18	26	1.96
58782676--58783199	88	5.9	90	70	17	353	34	20	18	25	1.96
58782857--58783135	89	3.2	88	70	19	274	34	20	19	25	1.96
58784826--58784870	18	2.5	19	78	10	58	37	6	0	55	1.26
58784886--58784917	13	2.4	14	94	5	57	31	0	3	65	1.08
58785352--58785393	22	1.9	22	85	0	57	33	2	2	61	1.21
58800673--58800702	13	2.3	13	100	0	60	53	23	6	16	1.66
58802952--58802983	16	1.9	16	93	6	55	18	9	0	71	1.12
58816775--58816806	12	2.4	14	90	10	50	25	0	0	75	0.81
58818101--58818131	16	1.9	16	93	0	53	51	0	9	38	1.35
58823994--58824052	9	6.6	9	80	0	64	47	15	8	28	1.74
58823994--58824052	27	2.2	27	84	0	73	47	15	8	28	1.74
58824322--58824374	18	2.9	18	88	0	79	26	16	18	37	1.93
58828002--58828046	24	1.9	23	82	13	56	48	24	6	20	1.73
58831879--58832122	33	7.3	33	72	9	154	28	24	16	30	1.96
58831877--58832130	101	2.5	101	88	1	384	27	25	16	30	1.96
58836924--58836963	19	2.1	19	85	0	53	35	2	7	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58839415--58839459	23	1.9	24	82	13	58	46	0	0	53	1.00
58840745--58840775	2	15.5	2	100	0	62	51	0	0	48	1.00
58844873--58844950	29	2.7	29	81	0	93	33	25	16	24	1.96
58849745--58849820	26	2.9	26	84	0	98	32	13	9	44	1.75
58849964--58849988	12	2.1	12	100	0	50	16	24	0	60	1.36
58853306--58853372	31	2.1	32	83	8	82	55	8	14	20	1.67
58853926--58853976	22	2.3	21	80	9	57	50	0	1	47	1.12
58853941--58853981	11	3.7	11	93	6	66	39	0	0	60	0.96
58857990--58858022	2	16.5	2	100	0	66	48	0	0	51	1.00
58873106--58873160	22	2.5	22	80	8	69	58	0	3	38	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292