genome.fa.s9.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  133  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39493150--39493358	103	2.0	103	93	0	355	33	15	19	30	1.93
39494070--39494099	15	2.0	15	100	0	60	40	6	26	26	1.81
39499631--39499668	18	2.2	17	86	9	51	23	7	0	68	1.16
39499991--39500032	20	2.0	21	90	4	68	71	0	7	21	1.09
39500069--39500110	20	2.0	21	90	4	68	71	0	7	21	1.09
39500147--39500187	20	2.0	20	90	9	66	70	0	7	21	1.11
39499960--39500271	155	2.0	156	99	0	617	54	0	6	38	1.26
39499960--39500271	78	4.0	78	99	0	617	54	0	6	38	1.26
39500224--39500265	20	2.0	21	90	4	68	71	0	7	21	1.09
39500670--39500732	31	2.1	31	87	3	92	23	1	12	61	1.39
39505455--39505502	18	2.6	19	83	9	64	50	6	4	39	1.47
39505461--39505501	9	4.6	9	90	6	57	53	2	2	41	1.27
39505582--39505622	18	2.2	19	87	12	59	58	4	2	34	1.32
39505613--39505705	27	3.4	27	72	16	75	60	2	0	37	1.09
39505645--39505688	10	4.5	10	78	16	56	70	2	0	27	0.99
39505643--39505696	19	2.7	19	80	11	65	68	1	0	29	1.00
39505643--39505696	20	2.8	18	81	15	63	68	1	0	29	1.00
39506687--39506735	20	2.3	22	76	20	59	44	0	0	55	0.99
39509168--39509199	16	2.0	16	93	0	55	34	18	0	46	1.49
39509403--39509686	50	5.7	50	82	5	333	29	27	16	26	1.97
39509403--39509716	151	2.1	151	89	2	479	30	26	17	26	1.97
39509403--39509687	101	2.8	99	81	3	347	29	27	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39511006--39511181	46	3.8	46	78	14	209	20	19	29	30	1.97
39511003--39511174	93	1.8	93	95	2	310	20	19	29	29	1.97
39514623--39514652	15	1.9	16	93	6	53	36	13	0	50	1.42
39515483--39515553	35	2.0	35	97	0	133	33	33	8	23	1.85
39522162--39522337	46	3.8	45	79	12	205	20	20	29	29	1.98
39522159--39522330	93	1.8	93	94	0	308	20	20	29	28	1.98
39523638--39523771	52	2.6	51	83	6	166	32	26	14	26	1.94
39526735--39526793	15	3.9	15	86	4	75	52	13	20	13	1.74
39536074--39536131	29	2.0	29	100	0	116	37	20	13	27	1.91
39542884--39543226	180	1.9	180	87	1	508	33	19	8	38	1.82
39543568--39543599	16	2.0	16	93	0	55	34	18	0	46	1.49
39543810--39544296	50	9.7	50	78	5	471	30	25	17	26	1.97
39543802--39544237	151	2.9	151	91	0	694	30	25	17	26	1.97
39543801--39544296	101	5.0	98	76	5	402	30	25	17	26	1.98
39543810--39544293	201	2.4	200	80	4	528	30	25	17	26	1.97
39543802--39544296	151	3.3	151	88	3	552	30	25	17	26	1.98
39544694--39544740	19	2.3	20	82	10	60	48	14	0	36	1.44
39554265--39554323	30	2.0	30	86	0	82	28	27	3	40	1.72
39555283--39555338	3	19.3	3	83	7	71	69	0	28	1	0.98
39555549--39555601	27	2.0	27	96	0	97	24	0	18	56	1.42
39555894--39556051	50	3.1	49	65	12	129	31	0	15	53	1.43
39555854--39556075	103	2.2	102	95	3	394	31	0	15	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39555789--39556104	103	3.0	103	86	6	392	31	0	15	52	1.47
39556069--39556100	16	2.1	16	94	5	57	37	3	6	53	1.42
39558287--39558497	46	4.6	44	76	11	183	28	18	28	23	1.98
39565951--39565996	24	1.9	24	82	8	58	34	26	0	39	1.57
39567976--39568232	46	5.5	46	75	12	172	28	18	28	23	1.98
39574019--39574119	50	2.0	50	96	0	184	30	15	26	26	1.96
39575273--39575380	27	4.0	26	84	6	117	39	21	8	30	1.83
39575283--39575408	54	2.3	54	81	8	141	41	22	8	27	1.83
39575419--39575470	27	1.9	27	88	7	79	40	13	11	34	1.81
39575523--39575614	27	3.4	27	85	4	116	33	21	25	19	1.97
39576773--39576820	25	2.0	24	83	4	60	31	25	18	25	1.98
39576857--39576927	20	3.5	20	88	0	106	35	11	21	32	1.89
39576972--39577124	24	6.4	24	90	3	229	28	21	21	28	1.99
39576972--39577124	47	3.2	47	87	5	227	28	21	21	28	1.99
39576972--39577124	71	2.1	71	93	1	261	28	21	21	28	1.99
39579049--39579106	30	2.0	30	89	3	91	31	8	29	31	1.87
39579456--39579667	47	4.5	47	75	12	161	28	17	30	23	1.97
39579450--39579667	94	2.3	95	78	8	232	27	17	30	23	1.97
39579505--39579671	47	3.6	47	78	13	173	27	17	31	22	1.97
39582536--39582573	7	5.4	7	84	12	51	86	2	0	10	0.66
39582541--39582573	14	2.3	15	94	5	59	87	0	0	12	0.53
39585517--39585644	47	2.8	46	85	3	177	31	20	26	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39585514--39585835	49	6.8	47	75	10	192	27	20	28	23	1.99
39588041--39588224	40	4.6	40	84	8	232	25	22	26	25	2.00
39588041--39588260	80	2.8	80	85	5	270	25	22	26	25	2.00
39596118--39596334	39	5.6	40	80	8	234	24	23	26	25	2.00
39596118--39596334	79	2.8	78	83	6	253	24	23	26	25	2.00
39604343--39604388	19	2.4	19	96	0	83	15	2	8	73	1.16
39608859--39609326	48	9.8	48	73	10	312	27	17	28	25	1.98
39608859--39609136	96	2.9	96	86	1	367	27	19	28	24	1.98
39608916--39609266	144	2.4	143	84	2	450	27	18	28	25	1.98
39608859--39609326	96	4.9	97	76	8	348	27	17	28	25	1.98
39608863--39609326	240	1.9	240	85	2	628	27	18	28	25	1.98
39617631--39617690	29	2.2	26	76	23	70	33	8	20	38	1.82
39624405--39624588	40	4.6	40	86	2	262	24	26	23	25	2.00
39627816--39627967	40	3.8	40	83	5	164	23	28	22	26	1.99
39635797--39635947	40	3.8	39	83	5	160	23	27	22	26	1.99
39640186--39640269	35	2.4	35	93	2	141	15	11	28	44	1.82
39644102--39644274	48	3.6	47	77	9	163	23	26	21	28	1.99
39644154--39644412	141	1.9	138	80	7	308	25	26	19	28	1.98
39644342--39644465	46	2.7	45	85	7	153	22	29	18	29	1.97
39645181--39645239	29	2.0	29	93	0	100	47	18	6	27	1.74
39652496--39652535	2	20.0	2	94	0	71	0	2	50	47	1.14
39654671--39654887	68	3.1	69	79	8	226	33	16	27	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39654908--39655053	54	2.6	54	78	3	157	43	11	20	23	1.85
39659150--39659277	28	4.5	29	89	3	179	26	14	28	30	1.95
39659154--39659277	57	2.2	57	86	2	169	25	15	29	29	1.96
39668048--39668144	42	2.3	42	85	3	133	21	32	22	22	1.98
39669208--39669294	42	2.1	42	97	0	165	21	20	31	26	1.98
39683679--39683706	2	14.0	2	100	0	56	50	0	0	50	1.00
39683851--39684021	46	3.7	46	78	13	158	26	19	29	23	1.98
39691068--39691131	31	2.1	31	96	0	119	23	21	15	39	1.92
39691323--39691441	24	5.0	24	89	5	170	26	22	21	28	1.99
39691323--39691441	47	2.5	48	89	5	170	26	22	21	28	1.99
39691491--39691551	20	3.0	20	92	0	104	32	21	11	34	1.89
39691594--39691641	25	1.9	25	86	0	69	25	16	25	33	1.96
39693695--39693719	13	1.9	13	100	0	50	40	4	24	32	1.73
39693714--39693767	24	2.3	23	81	9	65	31	5	16	46	1.70
39695170--39695202	7	4.7	7	85	14	50	84	3	0	12	0.72
39695221--39695252	10	3.1	11	86	13	50	78	0	0	21	0.76
39695508--39695576	19	3.3	20	72	18	52	57	2	7	31	1.40
39695517--39695627	7	14.9	7	67	22	57	56	0	6	36	1.31
39695517--39695627	10	10.6	10	69	23	61	56	0	6	36	1.31
39695542--39695627	30	2.9	30	77	14	83	58	0	4	37	1.19
39697222--39697351	43	3.0	44	88	4	192	29	29	14	26	1.95
39699004--39699211	40	5.2	40	84	0	218	26	21	25	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39705717--39705914	71	2.8	70	92	3	294	33	17	28	20	1.95
39705783--39705900	41	3.1	41	60	28	98	32	17	28	21	1.96
39705751--39705914	71	2.3	71	100	0	328	35	17	28	18	1.94
39713284--39713481	71	2.8	70	92	3	294	33	17	28	20	1.95
39713350--39713467	41	3.1	41	60	28	98	32	17	28	21	1.96
39713318--39713481	71	2.3	71	100	0	328	35	17	28	18	1.94
39728052--39728218	40	4.2	40	82	2	185	24	26	22	26	2.00
39731014--39731162	39	3.8	40	85	5	180	24	24	26	24	2.00
39739080--39739231	40	3.8	40	89	5	202	23	24	28	23	2.00
39739080--39739271	40	4.8	40	85	6	187	23	23	28	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292