Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  17  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4632431--4632523
3
30.0
3
71
21
59
30
2
5
62
1.29
4632480--4632521
16
2.6
16
88
7
59
28
2
4
64
1.26
4632454--4632505
22
2.4
21
75
9
50
32
0
5
61
1.20
4632517--4632770
142
1.8
133
80
13
291
34
4
5
55
1.44
4632823--4632850
12
2.3
12
100
0
56
32
0
0
67
0.91
4632839--4632893
21
2.5
22
77
20
60
27
9
0
63
1.24
4632985--4633019
7
5.0
7
86
13
54
14
0
0
85
0.59
4633166--4633258
25
3.7
25
73
9
73
33
3
4
59
1.33
4633503--4633531
2
14.5
2
100
0
58
48
0
0
51
1.00
4644683--4644763
41
2.0
42
87
2
119
51
13
20
13
1.75
4645693--4645978
137
2.1
136
95
0
509
31
24
18
25
1.98
4647763--4647889
26
4.9
26
96
0
227
37
25
4
31
1.77
4648880--4649087
72
2.8
72
86
5
265
29
15
21
33
1.94
4649105--4649139
14
2.5
14
90
0
61
37
14
0
48
1.44
4649025--4649490
90
5.1
90
87
5
573
29
17
19
33
1.94
4649372--4649398
14
1.9
14
100
0
54
22
14
11
51
1.73
4649283--4649491
99
2.1
100
84
7
273
29
15
17
37
1.91
4649664--4649882
73
3.0
72
82
6
235
25
15
24
34
1.95
4649881--4649927
7
6.9
7
90
7
62
8
0
0
91
0.42
4649880--4649919
1
40.0
1
89
0
62
5
0
0
95
0.29
4651135--4651167
17
2.0
17
88
5
50
69
3
3
24
1.16
4652632--4653205
144
4.0
144
94
0
979
28
23
14
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4655174--4655232
29
2.0
29
86
0
82
45
0
3
50
1.18
4655325--4655382
29
2.0
30
86
3
82
15
5
8
70
1.30
4668869--4668904
15
2.5
14
86
8
54
58
5
13
22
1.56
4670367--4670707
123
2.8
123
94
1
585
29
10
25
34
1.89
4670672--4670879
40
5.2
40
80
3
177
26
22
25
25
2.00
4670673--4670879
80
2.6
80
81
4
220
26
22
25
25
2.00
4672297--4672469
92
1.9
93
86
4
251
31
19
13
35
1.90
4684134--4684168
17
2.2
16
90
10
54
57
11
0
31
1.34
4684138--4684177
17
2.4
17
86
0
62
57
7
2
32
1.40
4685408--4685444
2
18.5
2
88
0
56
48
2
2
45
1.30
4685602--4685653
20
2.5
21
87
6
79
53
7
0
38
1.30
4686468--4686503
14
2.5
15
95
4
65
16
5
13
63
1.47
4686467--4686504
15
2.5
16
87
12
62
15
5
13
65
1.43
4686466--4686539
33
2.3
33
84
9
98
12
5
18
63
1.47
4686947--4687052
35
3.0
35
94
0
185
21
12
49
16
1.79
4687761--4687907
54
2.9
50
80
12
183
34
19
16
29
1.94
4687964--4688552
147
4.1
140
92
4
980
31
20
15
32
1.94
4688063--4688552
70
6.9
70
94
3
863
31
20
15
32
1.94
4687964--4688552
217
2.7
217
97
2
1093
31
20
15
32
1.94
4692418--4692470
26
2.0
27
85
7
74
24
15
22
37
1.92
4693949--4694079
25
5.2
26
92
4
209
38
22
4
34
1.75
4699518--4699570
26
2.0
27
85
7
74
24
15
22
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4701051--4701186
26
5.2
26
94
0
227
36
22
5
36
1.76
4701970--4702005
2
19.0
2
88
11
58
47
0
0
52
1.00
4711943--4712037
19
4.7
21
82
11
74
40
16
7
35
1.77
4711943--4712000
22
2.6
22
81
7
64
41
17
5
36
1.72
4711979--4712069
19
4.9
19
92
8
161
36
15
10
37
1.83
4713571--4713695
18
6.9
18
89
5
191
37
11
14
36
1.82
4713579--4713695
35
3.3
35
97
2
216
37
11
13
36
1.82
4713988--4714034
25
1.9
26
87
12
73
29
2
2
65
1.15
4721118--4721185
8
8.1
9
77
9
65
86
0
13
0
0.56
4721118--4721191
16
4.6
16
81
18
91
86
0
13
0
0.57
4721122--4721188
18
3.7
18
83
15
93
86
0
13
0
0.57
4721118--4721198
7
11.3
7
82
15
78
85
0
14
0
0.61
4721118--4721191
33
2.3
31
90
6
112
86
0
13
0
0.57
4721122--4721191
1
70.0
1
73
0
59
87
0
12
0
0.55
4722148--4722353
87
2.4
85
79
8
222
34
21
19
23
1.96
4722478--4724014
207
7.4
207
93
0
2556
30
17
22
29
1.97
4723639--4723813
88
2.0
87
80
11
198
31
16
22
30
1.95
4724414--4724503
18
4.9
18
90
5
137
37
11
14
36
1.82
4724422--4724503
35
2.3
36
95
4
148
37
12
13
36
1.82
4724795--4724841
25
1.9
25
83
12
62
27
4
2
65
1.22
4726253--4726291
13
2.9
13
84
3
51
58
7
2
30
1.39
4726406--4726450
2
22.5
2
100
0
90
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4733306--4733440
41
3.3
41
87
2
191
18
41
20
20
1.91
4734170--4734222
20
2.7
20
80
13
65
75
1
20
1
0.99
4734170--4734229
19
3.1
18
72
18
50
75
1
21
1
0.99
4735190--4735233
23
1.9
23
81
9
54
22
6
9
61
1.50
4742815--4742881
16
4.3
16
74
16
52
50
0
0
49
1.00
4742794--4742935
61
2.4
56
81
10
142
45
1
1
51
1.18
4743047--4743117
16
4.4
16
92
0
115
28
28
7
36
1.83
4747269--4747321
2
26.5
2
92
0
88
47
1
0
50
1.12
4754295--4754373
28
2.8
28
86
0
104
34
11
25
29
1.91
4756101--4756177
3
25.0
3
86
12
95
63
3
0
32
1.12
4756194--4756227
15
2.3
15
90
10
52
58
5
11
23
1.55
4756252--4756323
12
6.1
12
73
13
60
62
1
5
30
1.26
4756829--4756914
30
2.9
30
94
0
154
25
6
51
16
1.69
4757474--4758624
44
26.6
42
66
16
234
19
23
21
35
1.96
4757434--4757677
86
2.8
89
87
3
377
19
22
21
36
1.95
4757480--4757629
43
3.4
43
72
17
139
19
21
22
37
1.95
4757424--4757764
176
1.9
175
81
5
402
19
23
21
35
1.96
4757656--4758748
173
6.3
173
92
0
1751
20
23
21
34
1.96
4759087--4759236
44
3.5
44
75
12
148
21
22
20
36
1.96
4774457--4774497
5
8.4
5
82
15
50
46
14
19
19
1.84
4774448--4774497
24
2.1
24
85
7
66
48
14
18
20
1.82
4776399--4776428
2
15.0
2
92
0
51
46
0
3
50
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4776449--4776473
3
8.3
3
100
0
50
68
0
0
32
0.90
4776458--4776552
39
2.4
40
81
10
97
64
4
3
28
1.28
4776536--4776568
2
17.0
2
87
6
50
51
0
0
48
1.00
4776360--4776616
141
1.9
135
83
7
338
59
5
3
32
1.36
4776682--4776743
3
19.0
3
87
9
54
61
4
0
33
1.17
4776682--4776743
12
4.7
13
79
15
65
61
4
0
33
1.17
4776825--4776914
3
29.7
3
74
16
71
66
0
3
30
1.07
4776825--4776910
12
7.2
12
73
15
79
66
0
3
30
1.08
4776814--4776915
30
3.4
28
75
18
82
65
0
2
30
1.14
4777409--4777489
30
2.7
30
94
1
137
24
7
51
16
1.69
4777438--4777488
18
3.2
18
64
30
51
23
7
52
15
1.68
4778658--4778691
6
5.7
6
100
0
68
50
0
50
0
1.00
4779617--4779753
61
2.3
61
80
13
153
37
6
6
48
1.55
4789475--4789520
24
1.9
24
81
0
56
28
0
4
67
1.10
4802205--4802245
20
2.0
20
100
0
82
48
7
19
24
1.74
4804582--4804621
3
13.7
3
94
5
73
35
0
0
65
0.93
4807331--4807388
29
2.0
29
82
0
71
37
5
8
48
1.56
4808697--4808727
1
31.0
1
93
0
53
96
3
0
0
0.21
4809074--4809116
18
2.4
18
78
17
54
76
2
2
18
1.00
4809074--4809124
18
2.9
18
75
16
52
74
1
1
21
1.02
4809111--4809196
20
4.3
20
67
20
54
60
0
4
34
1.17
4809109--4809196
30
2.9
32
72
16
96
60
0
4
35
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4809162--4809204
18
2.2
20
80
12
54
65
2
2
30
1.18
4811313--4811370
28
2.1
28
93
0
98
37
10
10
41
1.73
4812991--4813065
30
2.5
30
81
10
82
34
2
6
56
1.40
4813037--4813092
24
2.3
25
82
14
64
30
3
8
57
1.47
4813148--4813184
19
1.9
19
94
0
65
32
13
2
51
1.55
4813959--4814016
25
2.3
26
86
13
79
31
3
8
56
1.46
4815865--4816095
118
2.0
118
92
0
390
28
31
17
22
1.97
4817050--4817107
1
58.0
1
75
0
53
87
0
0
12
0.53
4817050--4817101
13
4.1
12
85
9
68
88
0
0
11
0.52
4817049--4817107
16
3.7
16
81
6
66
86
0
0
13
0.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292