Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  115  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34979538--34979591
20
2.7
20
82
0
72
33
18
25
22
1.97
34980694--34980756
32
1.9
33
83
3
83
30
30
14
25
1.95
34985095--34985159
32
2.0
32
100
0
130
21
33
15
29
1.94
34985185--34985212
11
2.5
11
100
0
56
39
10
32
17
1.84
34992751--34992795
12
3.7
12
96
3
81
15
6
6
71
1.29
34992749--34992804
24
2.3
24
79
14
71
14
5
5
75
1.16
34993171--34993218
14
3.4
14
85
0
60
43
6
31
18
1.75
34994455--34994494
19
2.1
19
86
9
55
22
12
35
30
1.91
34997195--34997272
38
2.1
38
97
0
147
23
20
14
42
1.88
34998989--34999034
18
2.6
18
79
6
58
10
17
2
69
1.27
34998995--34999057
24
2.6
24
82
9
83
12
15
1
69
1.26
34999019--34999060
6
6.8
6
83
5
57
7
16
0
76
1.00
34999051--34999124
33
2.2
34
80
9
89
10
24
1
63
1.34
34999563--34999604
22
2.0
21
81
13
50
47
26
11
14
1.78
35000152--35000196
18
2.6
18
85
3
56
8
20
2
68
1.27
35002703--35002753
10
5.0
10
80
4
57
43
19
23
13
1.87
35004719--35004816
30
3.3
30
73
4
90
28
25
15
30
1.96
35007964--35008010
10
4.7
10
97
0
85
74
6
0
19
1.03
35010886--35010930
15
2.9
15
80
3
54
53
13
13
20
1.72
35019623--35019708
30
2.9
30
76
11
79
29
20
18
31
1.97
35024265--35024352
30
2.9
30
78
9
90
28
17
25
29
1.97
35024366--35024433
30
2.3
30
100
0
136
22
17
30
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35024905--35024939
13
2.7
13
95
0
61
62
5
0
31
1.18
35025154--35025213
21
3.0
19
81
11
66
36
18
25
20
1.94
35031772--35031819
20
2.4
20
75
0
60
20
29
18
31
1.97
35032010--35032061
20
2.6
21
80
17
58
30
28
15
25
1.96
35033414--35033501
30
2.9
30
71
6
88
28
28
15
27
1.96
35037331--35037398
21
3.2
21
65
8
57
58
7
22
11
1.57
35037309--35037405
42
2.3
42
91
1
151
56
5
23
14
1.58
35041647--35041682
10
3.6
10
84
0
54
19
25
19
36
1.95
35041637--35041683
20
2.3
20
77
0
58
25
27
17
29
1.97
35041646--35041690
20
2.2
20
84
7
56
20
26
20
33
1.97
35044515--35044592
29
2.7
29
83
0
102
21
33
17
26
1.96
35052356--35052428
29
2.5
29
84
0
92
21
34
16
27
1.95
35055087--35055164
29
2.7
29
85
0
84
23
33
16
26
1.96
35061472--35062511
517
2.0
521
99
0
2052
27
21
19
32
1.97
35063409--35063486
29
2.7
29
83
0
102
21
33
17
26
1.96
35071256--35071316
29
2.1
29
84
0
77
21
32
16
29
1.95
35071269--35071331
29
2.2
29
88
2
92
22
28
17
31
1.96
35074649--35074704
12
4.7
12
82
8
69
12
25
0
62
1.30
35074636--35074704
36
1.9
36
84
0
93
14
26
0
59
1.36
35074644--35074704
24
2.5
24
83
0
77
16
24
0
59
1.37
35075975--35076059
30
2.8
30
78
0
107
29
25
16
28
1.97
35083558--35083767
55
3.9
53
77
8
217
35
16
25
22
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35083565--35083765
108
1.8
110
88
4
309
34
16
25
22
1.95
35085639--35085736
30
3.3
30
69
4
81
29
15
26
28
1.96
35087970--35088052
30
2.7
30
81
9
89
13
21
1
63
1.35
35088003--35088058
18
3.1
18
76
5
51
7
19
3
69
1.27
35088028--35088052
12
2.1
12
100
0
50
8
16
0
76
1.02
35089053--35089085
13
2.5
13
95
0
57
21
6
0
72
1.05
35089053--35089085
14
2.4
14
95
5
59
21
6
0
72
1.05
35089079--35089107
11
2.6
11
100
0
58
13
0
6
79
0.93
35089053--35089110
12
4.9
12
82
4
64
20
3
5
70
1.21
35090702--35090784
30
2.8
30
73
0
85
27
16
27
27
1.97
35094767--35094827
30
2.0
30
83
0
77
36
22
3
37
1.71
35098747--35098796
14
3.5
15
81
8
50
78
4
16
2
1.00
35098754--35098792
20
2.0
20
90
10
62
82
5
10
2
0.93
35102453--35102508
5
11.0
5
78
17
62
76
1
17
3
1.01
35102453--35102508
11
5.5
10
76
19
62
76
1
17
3
1.01
35102556--35102586
12
2.6
12
100
0
62
45
12
16
25
1.83
35102605--35102638
12
2.8
12
95
0
59
58
0
26
14
1.36
35102593--35102645
12
4.4
12
82
0
52
66
1
22
9
1.31
35102589--35102680
42
2.2
42
82
7
116
65
1
22
10
1.31
35102623--35102682
30
2.0
31
83
9
79
58
1
25
15
1.46
35104788--35104884
30
3.2
31
75
5
101
27
27
15
28
1.96
35111103--35111127
13
1.9
13
100
0
50
36
16
32
16
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35111611--35111707
30
3.2
30
77
2
106
28
15
26
28
1.96
35113120--35113167
14
3.4
14
85
0
60
43
6
31
18
1.75
35119842--35119880
19
2.0
19
95
5
69
76
5
5
12
1.11
35136481--35136530
18
2.8
18
87
0
73
58
0
28
14
1.37
35136474--35136555
24
3.4
24
77
0
101
60
0
26
12
1.31
35136472--35136590
48
2.5
48
79
5
116
60
0
26
12
1.38
35136548--35136586
18
2.1
19
85
4
53
66
2
23
7
1.30
35138767--35138863
30
3.2
30
76
2
106
27
27
16
27
1.97
35141466--35141503
19
1.9
19
94
5
67
78
5
5
10
1.06
35143384--35143480
30
3.2
30
77
2
97
28
25
15
29
1.96
35151657--35152989
444
3.0
445
97
0
2501
24
26
15
34
1.94
35153821--35153868
14
3.4
14
85
0
60
43
6
31
18
1.75
35160419--35160466
14
3.4
14
85
0
60
43
6
31
18
1.75
35164632--35164728
30
3.2
30
70
8
81
28
28
14
27
1.95
35167271--35167333
5
12.0
5
79
15
58
76
3
17
3
1.05
35167271--35167333
11
6.0
10
74
20
58
76
3
17
3
1.05
35167381--35167411
12
2.6
12
100
0
62
45
12
16
25
1.83
35167414--35167500
12
7.2
12
71
5
59
65
0
21
12
1.26
35167408--35167463
18
3.1
18
76
5
60
71
1
19
7
1.18
35167419--35167488
24
2.9
25
76
6
72
62
0
24
12
1.30
35167414--35167495
30
2.7
31
81
12
107
65
0
21
12
1.25
35169606--35169702
30
3.2
30
69
13
74
29
28
15
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35174113--35174170
30
1.9
30
83
13
75
27
13
32
25
1.94
35176376--35176408
12
2.8
12
90
9
50
18
21
0
60
1.36
35176400--35176466
30
2.2
30
84
5
82
11
22
1
64
1.35
35176417--35176472
18
3.1
18
76
5
51
7
19
3
69
1.27
35176442--35176466
12
2.1
12
100
0
50
8
16
0
76
1.02
35176547--35176603
5
11.0
5
76
14
53
1
15
3
78
0.96
35176551--35176599
26
1.9
25
84
12
64
2
14
4
79
0.97
35176560--35176614
20
2.7
20
78
18
60
0
16
5
78
0.93
35181880--35181976
30
3.2
30
77
2
106
28
26
15
28
1.96
35194341--35194398
13
4.7
12
83
12
73
70
6
3
18
1.24
35194341--35194398
24
2.3
23
88
11
80
70
6
3
18
1.24
35197694--35197891
71
2.8
70
92
3
294
33
17
28
20
1.95
35197760--35197877
41
3.1
41
60
28
98
32
17
28
21
1.96
35197728--35197891
71
2.3
71
100
0
328
35
17
28
18
1.94
35207548--35207607
30
2.0
30
90
0
93
38
8
25
28
1.84
35211309--35211356
14
3.4
14
85
0
60
43
6
31
18
1.75
35211999--35212053
12
4.6
12
86
0
74
76
5
3
14
1.10
35212974--35213030
5
11.0
5
75
20
55
75
1
19
3
1.04
35213078--35213108
12
2.6
12
94
0
53
45
9
16
29
1.79
35213111--35213135
12
2.1
12
100
0
50
76
0
16
8
1.02
35213105--35213160
18
3.1
18
76
5
51
69
3
19
7
1.27
35213111--35213192
30
2.7
31
81
5
105
64
1
21
12
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35215406--35215503
30
3.3
30
72
4
90
27
26
16
29
1.97
35218999--35219138
38
3.7
38
89
0
217
22
22
22
32
1.98
35218989--35219159
76
2.2
78
84
5
231
23
22
23
30
1.99
35229546--35229577
15
2.1
16
94
5
57
31
0
3
65
1.08
35231069--35231162
28
3.3
28
83
2
116
29
28
13
27
1.94
35233781--35233820
11
3.6
11
79
0
53
72
5
2
20
1.15
35237519--35237615
30
3.2
29
71
8
79
28
27
15
27
1.96
35245366--35245460
30
3.2
30
78
3
111
27
26
16
29
1.97
35246584--35246609
8
3.2
8
100
0
52
23
38
0
38
1.55
35248055--35248111
5
11.0
5
77
17
55
78
1
17
1
0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292