Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  208  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61652622--61653109
27
18.3
26
76
10
282
29
12
20
37
1.90
61654376--61654438
31
2.1
31
90
3
101
58
12
3
25
1.49
61657260--61657307
25
1.9
25
95
0
87
29
22
20
27
1.99
61657351--61657404
20
2.7
20
94
0
90
37
11
18
33
1.86
61657459--61657677
24
9.0
24
88
3
314
30
20
20
28
1.98
61657459--61657677
49
4.5
48
88
3
314
30
20
20
28
1.98
61657459--61657677
73
3.0
73
88
2
325
30
20
20
28
1.98
61658909--61658957
11
4.3
11
82
10
62
59
6
0
34
1.22
61658926--61658998
31
2.4
31
75
9
78
53
5
0
41
1.24
61659448--61659491
19
2.2
20
96
4
81
13
9
34
43
1.76
61662197--61662240
3
14.7
3
80
0
52
61
2
6
29
1.34
61662404--61662438
16
2.2
16
89
0
52
65
2
8
22
1.34
61662514--61662538
13
1.9
13
100
0
50
68
0
8
24
1.16
61663831--61663859
3
9.7
3
100
0
58
31
0
0
68
0.89
61666676--61666809
57
2.4
57
96
0
241
38
10
23
27
1.87
61669452--61669765
120
2.5
122
83
7
359
38
22
15
23
1.93
61670697--61670727
7
4.4
7
100
0
62
74
0
0
25
0.82
61676986--61677743
206
3.7
206
89
1
1088
31
18
20
28
1.97
61682875--61683093
68
3.3
64
81
8
253
31
13
30
24
1.93
61685132--61685194
29
2.1
30
82
2
74
61
9
3
25
1.41
61685627--61685663
2
18.5
2
94
0
65
51
0
0
48
1.00
61693121--61693177
26
2.2
24
80
17
69
64
7
1
26
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61693908--61693945
2
19.0
2
100
0
76
0
0
50
50
1.00
61695394--61695538
8
18.1
8
99
0
281
25
0
24
50
1.50
61695394--61695538
20
7.2
20
99
0
281
25
0
24
50
1.50
61695350--61695560
20
10.6
20
94
0
260
29
0
20
50
1.49
61695558--61695653
8
11.5
8
81
8
102
47
11
2
38
1.51
61695550--61695753
16
12.5
16
73
15
125
44
10
6
38
1.64
61695561--61695655
26
3.7
26
88
0
127
48
11
2
37
1.51
61695577--61695639
10
6.9
10
77
20
75
50
15
0
33
1.45
61695685--61695752
2
34.0
2
84
0
91
47
4
2
45
1.38
61695605--61695779
96
1.8
96
93
0
305
42
12
9
36
1.74
61695685--61695748
28
2.3
28
97
0
119
46
4
3
45
1.39
61703325--61703428
55
1.9
55
84
4
138
21
28
24
25
1.99
61703828--61703873
17
2.6
18
86
3
58
41
2
0
56
1.11
61705805--61705873
28
2.5
28
95
2
122
18
10
27
43
1.82
61707500--61707537
20
1.9
20
88
0
58
52
10
2
34
1.50
61713811--61713879
27
2.6
27
93
4
113
18
8
26
46
1.78
61715505--61715542
20
1.9
20
88
0
58
52
10
2
34
1.50
61718300--61718355
18
3.3
18
66
19
57
51
7
3
37
1.47
61728070--61728396
131
2.5
129
87
3
473
27
18
19
34
1.95
61739819--61739953
43
3.1
43
62
10
103
34
19
25
20
1.96
61739837--61739970
44
3.1
43
65
14
103
30
21
24
23
1.99
61739783--61740126
87
3.9
88
84
1
440
31
21
25
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61739993--61740121
44
2.9
44
67
8
100
34
21
23
20
1.97
61740138--61740256
45
2.7
45
85
6
154
25
21
25
28
1.99
61743446--61743492
24
2.0
23
83
4
58
59
0
2
38
1.09
61743818--61743862
20
2.2
20
85
14
58
64
0
2
33
1.06
61743816--61743891
23
3.3
22
78
14
82
63
0
1
35
1.03
61743851--61743902
24
2.2
23
82
6
59
59
0
3
36
1.16
61745706--61746030
131
2.5
130
85
3
453
27
17
20
35
1.95
61745706--61746057
126
2.7
128
81
6
417
26
17
20
35
1.94
61746846--61746879
17
1.9
18
88
5
52
0
5
29
64
1.17
61756032--61756129
28
3.5
28
84
4
108
29
16
24
29
1.96
61763711--61763808
28
3.5
28
84
4
108
29
16
24
29
1.96
61766257--61766348
24
3.8
24
95
0
148
36
31
11
19
1.88
61766242--61766345
48
2.2
48
85
0
136
36
29
11
22
1.89
61766212--61766348
72
1.9
72
83
0
175
35
30
10
22
1.89
61767527--61767560
17
2.0
17
94
0
59
38
5
0
55
1.24
61768530--61768566
19
1.9
20
94
5
67
62
0
10
27
1.28
61768645--61768669
2
12.5
2
100
0
50
52
0
0
48
1.00
61770718--61771876
577
2.0
577
97
0
2174
38
19
11
29
1.87
61776682--61777126
217
2.0
221
95
3
799
33
12
13
40
1.83
61779304--61779637
97
3.5
93
79
8
323
31
10
20
37
1.87
61783289--61783573
3
94.0
3
79
11
237
30
3
1
63
1.22
61783375--61783413
8
4.9
8
90
0
51
30
2
0
66
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61783408--61783465
23
2.5
23
82
0
71
32
5
1
60
1.29
61783697--61783731
15
2.3
15
90
0
52
37
11
0
51
1.38
61785215--61785268
16
3.4
16
82
7
58
0
50
0
50
1.00
61785761--61785789
14
2.0
15
93
6
51
37
0
13
48
1.43
61787516--61787550
16
2.2
16
90
5
54
20
2
5
71
1.19
61788063--61788198
26
5.2
26
91
3
220
33
5
25
36
1.80
61788063--61788198
52
2.6
52
96
0
245
33
5
25
36
1.80
61789262--61789371
26
4.2
26
96
0
193
37
24
4
33
1.76
61801744--61801786
21
2.1
20
87
12
61
18
11
20
48
1.79
61805840--61805923
26
3.2
26
96
0
150
34
5
23
35
1.80
61807404--61807455
25
2.0
26
85
3
70
38
23
13
25
1.91
61811604--61811687
26
3.2
26
96
0
150
34
5
23
35
1.80
61813166--61813214
25
2.0
25
84
8
64
38
20
16
24
1.92
61814556--61814624
31
2.2
32
84
10
97
26
14
18
40
1.89
61816989--61817054
34
1.9
35
90
9
109
39
3
1
56
1.24
61816989--61817078
5
17.8
5
73
15
69
38
2
2
56
1.24
61818608--61818673
26
2.5
26
92
2
105
59
6
0
34
1.22
61819119--61819156
5
7.8
5
94
5
69
18
0
0
81
0.69
61825508--61825568
25
2.5
25
84
7
72
55
0
0
44
0.99
61825508--61825566
22
2.5
23
84
13
68
55
0
0
44
0.99
61825509--61825568
24
2.5
24
77
15
63
55
0
0
45
0.99
61827047--61827080
17
1.9
18
88
5
52
23
8
0
67
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61830847--61830883
16
2.5
14
87
12
56
2
13
0
83
0.74
61852045--61852071
13
2.1
13
100
0
54
14
37
33
14
1.88
61853258--61853303
18
2.6
18
96
0
83
26
54
4
15
1.59
61863473--61863502
15
2.1
15
93
6
53
83
0
10
6
0.81
61865106--61865181
3
25.3
3
94
0
134
64
1
1
32
1.10
61869913--61869969
30
1.9
30
85
7
80
17
29
29
22
1.97
61871736--61871760
11
2.3
11
100
0
50
72
0
0
28
0.86
61872030--61872088
31
1.9
30
83
10
75
28
22
3
45
1.68
61872853--61873003
42
3.5
43
81
8
164
24
20
28
26
1.99
61881303--61881727
44
9.5
44
78
4
373
31
18
21
28
1.97
61881989--61882025
19
1.9
19
88
0
56
64
27
2
5
1.28
61883355--61883399
4
11.2
4
81
9
56
22
0
4
73
1.01
61883358--61883396
21
1.9
20
89
5
60
20
0
5
74
1.01
61897954--61898019
20
3.4
20
70
16
66
75
15
6
3
1.11
61898599--61898730
25
5.5
23
68
13
63
34
3
3
57
1.35
61898674--61898750
2
39.5
2
74
14
54
38
2
2
55
1.27
61898676--61898734
25
2.4
25
79
0
64
35
3
3
57
1.32
61898768--61898826
25
2.5
24
78
10
68
33
8
6
50
1.59
61898784--61898832
25
2.0
25
91
0
80
34
8
6
51
1.57
61898987--61899034
16
3.1
15
90
6
69
31
2
2
64
1.16
61898987--61899038
8
6.5
8
82
8
61
30
1
1
65
1.14
61905841--61905982
72
2.0
71
90
4
225
21
16
22
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61905915--61906402
140
3.5
140
96
1
888
25
17
20
37
1.93
61906240--61906273
13
2.5
13
90
4
50
20
11
8
58
1.59
61906322--61906547
72
3.0
72
82
11
258
31
16
18
33
1.93
61906407--61906547
72
2.0
72
98
0
273
33
16
17
32
1.92
61906585--61906618
14
2.4
14
90
0
50
20
17
2
58
1.51
61906621--61906973
151
2.3
149
86
6
496
30
17
22
29
1.97
61906622--61906967
74
4.6
74
86
5
462
30
17
22
30
1.96
61907620--61907693
36
2.1
34
90
9
114
77
13
6
2
1.08
61907629--61907693
19
3.5
19
70
18
64
75
15
6
3
1.12
61908273--61908404
25
5.5
23
68
13
63
34
3
3
57
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292