genome.fa.s9.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  220  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64551698--64551804	13	8.8	12	69	21	64	40	0	1	57	1.16
64551669--64551724	23	2.4	25	82	17	75	41	0	0	58	0.98
64551719--64551853	22	5.8	23	63	24	61	42	0	1	54	1.14
64551711--64551754	22	2.1	20	87	8	61	38	0	2	59	1.10
64551686--64551824	36	4.0	35	90	3	203	41	0	1	56	1.13
64551686--64551824	71	2.0	68	87	6	199	41	0	1	56	1.13
64551781--64551859	21	3.5	21	72	16	61	45	0	1	53	1.08
64551792--64551842	20	2.4	21	90	6	77	43	0	0	56	0.99
64551834--64551892	14	4.4	13	78	6	55	50	0	0	49	1.00
64551857--64551893	13	2.7	14	84	15	51	54	0	0	45	1.00
64566493--64566601	45	2.4	45	81	6	132	27	22	23	25	2.00
64566521--64566716	45	4.4	45	73	10	159	25	27	17	30	1.97
64566495--64566692	90	2.2	88	80	8	222	27	23	20	28	1.99
64582597--64582728	39	3.5	36	75	16	117	48	3	16	31	1.62
64582597--64582739	38	3.8	38	78	10	132	48	4	16	30	1.65
64583257--64583315	13	4.5	13	70	16	50	35	1	3	59	1.24
64583251--64583300	24	2.0	26	84	7	68	40	2	4	54	1.31
64594056--64594121	28	2.4	27	80	5	71	56	3	6	34	1.40
64604270--64604300	3	10.3	3	100	0	62	32	0	0	67	0.91
64604490--64604516	14	1.9	14	100	0	54	33	0	0	66	0.92
64604482--64604516	17	2.1	16	94	5	61	31	0	0	68	0.90
64604486--64604516	3	10.7	3	93	6	55	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64613713--64613755	13	3.3	12	87	9	50	41	0	6	51	1.29
64613734--64613784	14	3.7	14	75	15	52	41	1	13	43	1.55
64614160--64614202	21	2.0	22	86	4	61	58	11	2	27	1.46
64616240--64616282	3	14.3	3	100	0	86	67	0	0	32	0.91
64616273--64616312	14	2.7	15	84	7	55	65	2	10	22	1.35
64617764--64617807	12	3.6	12	82	14	54	13	0	6	79	0.92
64617764--64617801	19	2.0	20	89	5	60	13	0	7	78	0.94
64620269--64620300	2	16.5	2	93	6	57	46	0	0	53	1.00
64620349--64620420	20	3.5	20	74	12	58	33	5	4	56	1.41
64621029--64621084	21	2.6	22	81	13	71	28	8	0	62	1.25
64621040--64621080	22	1.9	21	90	5	64	26	12	0	60	1.31
64620999--64621094	37	2.5	37	79	12	97	31	7	1	60	1.31
64625084--64625117	9	3.8	9	88	0	50	47	2	32	17	1.63
64633596--64634188	87	6.8	86	75	13	509	27	15	19	37	1.92
64633763--64633797	14	2.5	14	90	0	52	22	8	2	65	1.34
64635490--64635526	19	2.0	18	89	5	56	0	54	0	45	1.00
64635972--64636017	22	2.1	22	100	0	92	34	0	4	60	1.16
64637107--64637162	21	2.6	22	81	13	71	28	8	0	62	1.25
64637118--64637158	22	1.9	21	90	5	64	26	12	0	60	1.31
64637077--64637172	37	2.5	37	79	12	97	31	7	1	60	1.31
64640098--64640131	17	2.0	17	88	0	50	11	23	0	64	1.26
64645475--64645527	3	17.7	3	100	0	106	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64646534--64646580	3	15.3	3	95	4	85	65	0	0	34	0.93
64648260--64648288	1	29.0	1	100	0	58	0	0	0	100	0.00
64650421--64650468	24	2.0	24	87	0	69	22	0	16	60	1.36
64650426--64650481	24	2.4	24	82	5	62	25	0	21	53	1.46
64650568--64650601	16	2.1	17	94	5	61	11	0	35	52	1.38
64650424--64651223	156	5.1	156	85	5	1049	34	1	19	44	1.61
64650422--64651223	157	5.1	156	86	5	972	34	1	19	44	1.61
64650424--64651223	315	2.5	310	86	5	1072	34	1	19	44	1.61
64651038--64651096	24	2.5	25	78	15	72	22	0	27	50	1.49
64651054--64651103	23	2.1	24	82	10	59	18	0	28	54	1.44
64651130--64651182	26	2.1	25	82	10	63	49	1	9	39	1.46
64651244--64651678	126	3.5	126	90	0	665	37	15	19	27	1.92
64655936--64655968	7	4.7	7	92	0	57	60	12	0	27	1.32
64657109--64657155	22	2.2	21	85	14	62	46	8	17	27	1.76
64662702--64663011	128	2.4	127	82	1	368	35	17	17	28	1.93
64663294--64663318	12	2.1	12	100	0	50	48	8	20	24	1.76
64663682--64663708	2	13.5	2	100	0	54	51	0	0	48	1.00
64664106--64664167	28	2.2	29	88	2	90	58	3	1	37	1.24
64667956--64668008	28	1.9	27	84	3	70	26	26	18	28	1.98
64667970--64668104	60	2.2	59	83	8	157	25	25	20	27	1.99
64668097--64668142	20	2.3	20	82	14	60	28	28	17	26	1.98
64673431--64673483	28	1.9	27	84	3	70	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64673445--64673579	60	2.2	59	83	8	157	25	25	20	27	1.99
64673572--64673617	20	2.3	20	82	14	60	28	28	17	26	1.98
64676507--64676542	19	1.9	19	88	5	56	47	0	2	50	1.15
64678032--64678094	28	2.2	29	88	8	103	34	11	12	41	1.79
64679193--64679283	41	2.2	41	96	0	173	21	30	23	24	1.99
64679943--64680105	52	3.2	50	80	11	149	30	26	15	26	1.96
64679961--64680105	53	2.8	52	87	1	182	31	26	15	26	1.96
64679973--64680105	52	2.5	53	87	1	178	30	27	15	27	1.96
64683169--64683218	11	4.5	11	82	5	64	34	0	2	64	1.05
64683167--64683221	23	2.5	21	85	11	74	34	0	1	63	1.05
64683658--64683836	46	4.2	46	75	17	186	41	16	23	18	1.89
64683709--64683776	34	2.0	34	94	0	118	42	16	22	19	1.89
64683663--64683822	80	2.0	80	90	2	250	42	15	23	18	1.88
64689782--64689896	27	4.3	26	86	5	140	36	22	23	17	1.95
64689782--64689896	54	2.1	54	87	3	160	36	22	23	17	1.95
64691517--64691626	26	4.2	26	94	0	184	37	24	3	34	1.73
64694239--64694282	18	2.4	18	80	0	52	63	4	9	22	1.42
64697297--64697326	15	2.0	15	93	0	51	40	10	26	23	1.86
64697579--64697622	22	2.0	22	100	0	88	18	22	13	45	1.84
64697827--64699008	591	2.0	590	97	0	2215	37	19	14	28	1.91
64699375--64699402	2	14.0	2	100	0	56	50	0	0	50	1.00
64701090--64701144	2	28.0	2	80	10	51	52	5	1	40	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64701661--64701697	11	3.2	12	88	11	60	45	0	54	0	1.00
64701659--64701708	11	4.5	11	82	9	57	44	0	56	0	0.99
64701960--64702015	18	3.4	18	70	27	52	14	5	16	64	1.46
64701963--64701997	13	2.5	15	90	9	56	17	5	11	65	1.43
64701962--64702034	16	4.7	16	69	24	57	13	6	16	63	1.51
64701959--64702030	32	2.2	32	85	4	92	13	5	15	65	1.44
64702439--64702541	35	2.9	35	94	0	179	23	12	48	15	1.79
64705261--64705331	32	2.2	32	90	5	108	38	8	25	28	1.85
64705261--64705331	16	4.4	16	79	10	83	38	8	25	28	1.85
64706728--64706792	34	2.0	34	84	6	89	30	26	16	26	1.97
64707100--64707152	26	2.0	27	85	7	74	24	15	22	37	1.92
64708637--64708744	26	4.2	26	93	0	189	35	24	8	32	1.85
64715677--64715710	2	17.0	2	100	0	68	50	0	0	50	1.00
64717206--64717251	20	2.2	20	85	14	58	26	8	8	56	1.58
64717409--64717446	19	2.1	18	85	14	51	21	7	0	71	1.11
64717680--64717740	3	20.3	3	75	6	52	31	4	4	59	1.40
64722961--64723110	27	5.6	27	80	3	88	38	22	7	32	1.81
64722999--64723110	54	2.1	54	84	0	143	40	21	6	32	1.78
64723015--64723138	54	2.3	54	91	0	194	42	18	7	31	1.77
64723015--64723138	27	4.6	27	85	2	169	42	18	7	31	1.77
64723121--64723182	27	2.3	27	91	0	97	40	16	16	27	1.89
64723015--64723164	54	2.8	54	84	4	151	42	18	9	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64723015--64723167	81	1.9	81	83	5	202	41	18	9	31	1.82
64723803--64723899	28	3.5	28	91	4	153	45	25	8	20	1.79
64730517--64730556	9	4.4	9	81	12	55	72	0	2	25	0.97
64730807--64730849	3	14.3	3	90	0	68	62	0	2	34	1.08
64732489--64732514	12	2.2	12	100	0	52	0	0	46	53	1.00
64732502--64732573	22	3.2	22	84	2	90	18	1	37	43	1.59
64732510--64732580	23	3.1	23	85	2	90	19	2	39	38	1.67
64737454--64737513	26	2.3	27	80	13	72	35	0	3	61	1.12
64737468--64737523	26	2.0	26	83	10	67	33	1	1	62	1.16
64737603--64737648	23	2.0	24	83	12	60	28	13	4	54	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292