genome.fa.s9.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  143  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42564918--42564974	9	5.9	9	73	15	51	35	8	21	35	1.84
42564916--42564978	20	3.2	20	95	0	117	36	12	19	31	1.89
42565033--42565221	24	8.0	24	89	4	269	29	23	20	26	1.99
42565033--42565202	47	3.6	47	91	0	268	30	23	20	26	1.98
42565411--42565474	31	2.1	31	90	0	101	35	15	23	25	1.94
42568321--42568903	27	21.6	27	86	3	717	28	22	9	39	1.84
42570232--42570288	9	5.9	9	73	15	51	35	8	21	35	1.84
42570230--42570292	20	3.2	20	95	0	117	36	12	19	31	1.89
42570347--42570536	24	8.0	24	88	3	260	29	23	21	26	1.99
42570346--42570536	71	2.7	71	87	8	262	29	23	20	26	1.99
42570346--42570537	47	4.0	47	87	4	251	30	22	20	26	1.99
42570730--42570793	31	2.1	31	90	0	101	35	15	23	25	1.94
42581310--42581451	60	2.4	60	91	0	230	37	22	11	28	1.90
42583885--42584446	138	4.1	138	91	2	880	46	4	7	41	1.53
42585692--42585716	13	1.9	13	100	0	50	48	16	0	36	1.46
42588022--42588105	25	3.4	25	70	5	71	29	16	21	32	1.95
42589012--42589101	46	2.0	46	93	0	153	32	11	20	36	1.87
42596915--42597082	40	4.2	40	75	6	135	22	26	23	27	1.99
42600390--42600540	42	3.5	43	77	9	148	22	21	26	29	1.99
42600385--42600540	43	3.7	41	76	11	145	22	21	26	30	1.99
42602348--42602407	27	2.3	26	85	2	75	21	23	20	35	1.96
42610856--42610892	17	2.2	17	100	0	74	29	0	27	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42616419--42616448	15	2.1	15	93	6	53	30	6	26	36	1.82
42616631--42616693	31	2.0	31	81	6	74	52	0	4	42	1.22
42619078--42619285	40	5.2	40	84	0	218	25	22	25	25	2.00
42619079--42619285	80	2.6	80	83	4	247	25	22	26	25	2.00
42623862--42623931	28	2.5	28	90	4	106	32	27	12	27	1.93
42631808--42631946	34	3.8	38	81	16	170	24	22	28	25	2.00
42631967--42632069	40	2.6	40	87	4	138	28	22	26	23	1.99
42637637--42637706	28	2.5	28	90	4	106	32	27	12	27	1.93
42638260--42638291	2	16.0	2	100	0	64	50	0	0	50	1.00
42645302--42645379	40	2.0	39	85	12	106	51	12	8	26	1.70
42646774--42646808	18	1.9	18	100	0	70	42	22	11	22	1.85
42651145--42651254	28	3.9	28	79	2	98	28	30	14	26	1.95
42656177--42656239	31	2.0	31	100	0	126	49	12	6	31	1.66
42656181--42656251	31	2.3	31	90	7	110	50	12	4	32	1.59
42658836--42659042	24	8.6	24	95	0	324	21	19	25	34	1.96
42658860--42659064	48	4.3	48	79	8	202	22	19	24	33	1.97
42673589--42673613	12	2.1	12	100	0	50	40	0	8	52	1.31
42673667--42673709	3	14.3	3	100	0	86	34	0	0	65	0.93
42676079--42676149	25	2.8	25	93	2	115	26	26	22	23	2.00
42676369--42676452	31	2.7	31	94	1	143	33	17	25	23	1.97
42678516--42678561	3	15.3	3	100	0	92	34	0	0	65	0.93
42682527--42682641	40	2.8	42	90	5	198	21	20	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42684218--42684265	25	1.9	25	91	0	78	33	22	14	29	1.94
42684398--42684468	25	2.8	25	95	2	124	25	26	23	23	2.00
42684696--42684779	31	2.7	31	92	1	134	32	17	25	25	1.97
42685620--42685657	17	2.2	18	85	4	51	21	2	7	68	1.28
42690876--42691137	56	4.7	56	90	0	400	33	22	16	27	1.95
42697372--42697435	31	2.1	31	90	0	101	25	23	15	35	1.94
42697626--42697739	24	4.8	24	96	1	205	28	21	21	28	1.99
42697796--42697875	9	8.2	9	74	15	70	32	20	12	35	1.90
42697794--42697876	20	4.2	20	95	0	148	31	19	13	36	1.90
42697794--42697865	11	7.1	11	73	17	75	30	19	13	36	1.91
42697913--42697960	25	1.9	25	86	0	69	25	16	25	33	1.96
42699119--42699202	27	3.1	27	91	3	125	20	25	22	32	1.98
42699119--42699212	27	3.5	26	87	7	118	20	24	20	35	1.96
42700597--42700760	40	4.1	40	82	4	179	25	28	21	25	1.99
42700583--42700760	80	2.2	80	82	3	207	24	27	21	25	2.00
42701448--42701483	2	18.0	2	100	0	72	50	0	0	50	1.00
42708641--42708804	40	4.1	40	82	4	179	25	28	21	25	1.99
42708627--42708804	80	2.2	80	82	3	207	24	27	21	25	2.00
42710538--42710645	27	3.9	27	75	13	94	31	9	18	40	1.82
42710629--42710731	54	1.9	54	90	4	163	31	6	20	41	1.78
42710600--42710848	27	9.2	27	80	6	148	34	7	20	37	1.82
42710620--42710875	81	3.2	81	78	5	205	35	7	21	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42710746--42710995	54	4.5	54	72	14	200	42	8	22	27	1.82
42710747--42711018	27	9.8	27	75	11	167	41	8	22	27	1.83
42710818--42710942	64	2.0	63	87	1	178	40	7	26	25	1.81
42710835--42710915	37	2.2	38	81	2	92	40	7	29	22	1.81
42710790--42710971	90	2.0	91	86	3	251	41	8	24	25	1.82
42710881--42711012	53	2.5	53	81	3	149	41	8	22	27	1.82
42713858--42713921	31	2.1	31	90	0	101	25	23	15	35	1.94
42714112--42714226	24	4.8	24	93	2	180	28	22	20	28	1.98
42714281--42714363	20	4.2	20	90	0	130	32	18	12	37	1.87
42714289--42714363	15	5.1	15	71	17	59	33	18	10	37	1.86
42714400--42714447	25	1.9	25	86	0	69	25	16	25	33	1.96
42715606--42715689	27	3.1	27	91	3	125	20	25	22	32	1.98
42715606--42715699	27	3.5	26	87	7	118	20	24	20	35	1.96
42715751--42716007	27	9.4	27	76	9	128	32	8	19	38	1.82
42715736--42715944	54	3.8	54	77	9	172	32	10	18	39	1.84
42715841--42715966	54	2.3	53	82	9	148	28	7	20	42	1.80
42715824--42716007	81	2.3	81	77	7	194	32	7	21	39	1.81
42715959--42716234	27	9.8	27	74	9	167	39	7	23	30	1.81
42715959--42716227	54	4.8	54	73	11	225	40	7	21	30	1.81
42715960--42716227	81	3.2	81	75	11	194	40	7	21	30	1.81
42716057--42716129	38	1.9	38	88	0	110	36	6	32	23	1.81
42716032--42716153	65	1.9	65	82	0	154	38	5	27	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42716003--42716183	92	2.0	92	83	0	227	40	7	23	28	1.81
42715967--42716213	119	2.1	119	82	1	289	40	7	23	28	1.82
42715959--42716234	146	1.9	146	85	0	381	39	7	23	30	1.81
42716095--42716261	54	3.1	54	77	0	181	37	7	24	30	1.84
42721098--42721128	15	2.1	15	100	0	62	45	6	0	48	1.28
42721816--42722255	144	3.1	144	97	0	837	21	10	28	39	1.86
42722744--42722875	29	4.6	29	86	0	156	30	15	30	24	1.95
42729765--42730199	143	3.1	143	98	1	831	21	10	28	39	1.86
42730681--42730812	29	4.6	29	86	0	156	30	15	30	24	1.95
42734668--42734741	26	2.8	26	93	0	121	31	17	12	39	1.86
42738624--42738676	26	2.0	26	82	7	63	26	15	20	37	1.92
42743550--42743915	46	8.0	46	92	1	565	22	23	14	39	1.91
42749169--42749221	26	2.0	26	82	7	63	26	15	20	37	1.92
42750700--42750753	26	2.1	26	100	0	108	35	25	7	31	1.84
42753807--42753836	2	15.0	2	100	0	60	50	0	0	50	1.00
42758680--42758763	42	2.0	42	100	0	168	40	19	21	19	1.92
42760094--42760308	45	4.9	44	84	2	270	26	27	21	23	1.99
42767750--42767925	46	3.8	46	81	10	223	20	22	29	27	1.98
42767746--42767917	93	1.8	93	94	0	308	20	22	30	26	1.98
42776729--42776915	71	2.7	68	93	5	281	18	28	18	34	1.95
42776752--42776915	71	2.3	71	100	0	328	18	28	17	35	1.94
42776752--42776949	71	2.8	70	92	3	276	20	28	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42784296--42784482	71	2.7	68	93	5	281	18	28	18	34	1.95
42784319--42784482	71	2.3	71	100	0	328	18	28	17	35	1.94
42784319--42784516	71	2.8	70	92	3	276	20	28	17	33	1.95
42785447--42785577	68	1.9	69	90	4	212	33	21	16	29	1.95
42797572--42797612	3	13.7	3	100	0	82	65	0	0	34	0.93
42798074--42798116	13	3.4	13	74	6	52	81	4	11	2	0.93
42798396--42798472	26	2.9	26	86	7	93	5	2	22	70	1.20
42800055--42800081	2	13.5	2	100	0	54	48	0	0	51	1.00
42804309--42804337	15	2.0	15	93	6	51	6	0	27	65	1.18
42804775--42804809	18	1.9	18	88	0	52	17	37	0	45	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292