genome.fa.s9.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  158  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47075246--47075322	38	2.0	38	97	0	145	51	12	11	23	1.73
47076068--47076119	8	6.1	8	76	12	50	76	0	9	13	1.01
47076069--47076101	17	1.9	17	88	11	50	78	0	9	12	0.95
47076792--47076867	38	2.0	38	100	0	152	28	10	36	23	1.88
47078694--47078759	33	2.0	33	96	0	123	62	15	4	18	1.49
47078952--47079432	152	3.3	146	83	8	589	43	4	9	42	1.58
47084655--47084717	31	1.9	34	81	15	80	26	15	3	53	1.57
47093116--47093209	25	3.8	25	70	20	72	23	21	20	35	1.96
47093157--47093219	25	2.6	25	80	12	76	26	19	22	31	1.97
47095715--47095748	18	1.9	18	88	5	52	55	2	11	29	1.50
47096474--47096533	10	6.0	10	80	7	59	66	3	5	25	1.27
47099286--47099319	3	11.3	3	100	0	68	32	0	0	67	0.91
47109719--47109751	16	2.1	16	94	0	57	48	24	9	18	1.76
47111895--47111962	33	2.1	33	100	0	136	60	8	5	25	1.49
47112822--47112901	25	3.2	24	68	19	65	22	20	20	37	1.94
47114007--47114046	12	3.3	12	85	0	53	5	22	42	30	1.75
47115510--47115937	155	2.7	154	80	10	487	44	5	10	39	1.62
47115942--47116001	19	3.1	20	77	11	63	46	1	11	40	1.50
47117478--47117504	4	6.8	4	100	0	54	0	22	0	77	0.76
47120924--47120987	32	2.0	33	84	9	87	28	3	17	51	1.60
47125103--47125131	15	1.9	15	100	0	58	24	0	0	75	0.80
47125280--47125317	10	3.7	10	83	16	51	86	2	0	10	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47126970--47127033	26	2.5	26	89	0	101	34	20	7	37	1.81
47126970--47127031	13	4.8	13	72	7	54	33	20	8	37	1.83
47128291--47128321	3	10.3	3	100	0	62	0	32	0	67	0.91
47153234--47153274	20	2.1	19	90	4	64	29	0	0	70	0.87
47159936--47159994	10	5.9	10	78	5	57	66	1	10	22	1.31
47167848--47167950	29	3.6	28	81	5	116	21	16	33	29	1.95
47173970--47174072	29	3.6	29	80	2	109	21	17	33	28	1.96
47175517--47175648	47	2.7	49	83	8	171	28	21	29	19	1.98
47176609--47176664	28	2.0	28	89	10	87	14	21	46	17	1.84
47177691--47178259	283	2.0	284	97	0	1086	35	11	27	24	1.91
47184133--47184311	47	3.8	49	78	10	178	28	20	29	22	1.98
47184139--47184311	97	1.8	94	83	6	231	28	19	28	23	1.98
47187908--47188042	42	3.2	42	81	2	146	43	16	21	18	1.88
47187913--47187989	21	3.7	21	69	0	73	42	16	22	18	1.89
47188025--47188071	20	2.3	21	82	14	62	40	12	19	27	1.88
47195223--47195280	23	2.6	21	82	17	73	74	8	3	13	1.19
47195751--47195776	8	3.2	8	100	0	52	76	0	0	23	0.78
47202188--47202219	15	2.1	15	94	0	55	28	9	37	25	1.87
47203043--47203126	37	2.2	36	84	12	107	54	0	0	45	0.99
47203345--47203471	66	1.9	66	90	0	200	33	11	10	44	1.75
47204707--47204747	3	13.7	3	100	0	82	0	31	0	68	0.90
47218978--47219141	71	2.3	71	97	0	310	19	26	17	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47218978--47219175	71	2.8	70	90	3	231	21	27	17	34	1.95
47224199--47224240	16	2.5	17	84	11	59	38	0	0	61	0.96
47224198--47224248	23	2.2	24	85	3	68	35	0	1	62	1.06
47224628--47224687	31	1.9	31	86	0	84	18	16	11	53	1.72
47225856--47225886	16	2.0	16	93	6	55	64	6	0	29	1.18
47226249--47226317	30	2.3	32	75	14	74	57	0	1	40	1.07
47229371--47229427	26	2.2	26	83	0	69	54	14	8	22	1.67
47230449--47230493	21	2.1	22	87	4	65	60	4	4	31	1.37
47237221--47237384	71	2.3	71	100	0	328	18	28	17	35	1.94
47237221--47237418	71	2.8	70	91	3	258	20	28	17	33	1.95
47244641--47244827	71	2.7	68	89	7	245	19	28	17	34	1.95
47244664--47244827	71	2.3	71	97	0	310	19	28	17	34	1.95
47244664--47244861	71	2.8	70	90	3	231	21	28	17	33	1.95
47252835--47252880	20	2.3	20	85	3	58	65	2	4	28	1.23
47252823--47252891	11	6.4	10	75	18	50	68	1	4	26	1.17
47252914--47252955	20	2.2	20	83	8	52	64	0	2	33	1.07
47256239--47256277	11	3.5	11	93	6	62	25	35	0	38	1.56
47256264--47256312	22	2.3	22	78	3	55	28	16	6	48	1.69
47256277--47256330	22	2.3	25	84	9	69	27	11	9	51	1.67
47257197--47257705	265	1.9	265	94	0	892	38	14	12	33	1.85
47257677--47257731	26	2.1	26	100	0	110	58	7	3	30	1.43
47257748--47257779	7	4.6	7	92	0	55	28	0	9	62	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47258396--47258438	18	2.4	18	84	7	52	16	30	9	44	1.79
47258843--47259357	131	3.9	131	94	2	861	35	3	4	55	1.39
47259311--47259395	39	2.2	38	81	6	100	41	5	5	47	1.52
47259383--47259413	9	3.4	9	90	0	53	38	3	0	58	1.15
47261518--47261556	19	2.0	20	85	14	55	53	5	2	38	1.37
47262142--47262192	22	2.3	21	87	9	75	29	31	0	39	1.57
47262142--47262192	11	4.7	10	86	13	66	29	31	0	39	1.57
47263111--47263628	265	2.0	264	92	1	867	38	15	13	33	1.86
47264283--47264320	18	2.1	18	90	0	58	21	26	10	42	1.85
47264731--47265238	132	3.9	131	90	3	794	36	3	5	54	1.41
47264733--47265238	258	2.0	258	92	1	836	36	3	5	54	1.41
47265264--47265294	9	3.4	9	90	0	53	38	3	0	58	1.15
47266884--47266938	20	2.8	20	80	0	56	70	3	3	21	1.18
47266912--47266977	21	3.1	21	75	12	71	65	1	3	30	1.17
47266912--47266977	22	3.0	22	82	4	89	65	1	3	30	1.17
47267069--47267101	2	16.5	2	100	0	66	51	0	0	48	1.00
47267420--47267562	28	4.9	29	75	13	116	32	2	1	64	1.14
47267464--47267570	10	10.9	10	69	24	50	32	1	0	64	1.11
47267420--47267559	61	2.4	57	82	12	162	32	2	1	64	1.14
47267474--47267560	17	4.5	20	76	21	64	31	1	1	66	1.06
47267474--47267513	20	1.9	22	85	10	57	30	2	2	65	1.19
47267498--47267560	8	8.0	8	71	15	51	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47268371--47268415	23	2.0	23	91	4	74	46	17	4	31	1.68
47268368--47268431	22	3.0	21	82	12	78	43	18	4	32	1.71
47274598--47274622	7	3.6	7	100	0	50	28	0	0	72	0.86
47274652--47274754	23	4.2	26	75	13	92	33	12	30	24	1.92
47276147--47276203	22	2.6	21	83	8	69	45	19	0	35	1.50
47281854--47281888	18	1.9	18	88	0	52	25	34	34	5	1.80
47282445--47282473	14	2.1	14	100	0	58	41	0	6	51	1.28
47282416--47282645	62	3.7	62	94	0	397	48	8	7	36	1.61
47282501--47282535	14	2.5	14	90	0	52	42	2	5	48	1.41
47286744--47286889	72	2.0	71	90	3	231	19	6	24	50	1.70
47287104--47287153	18	2.8	18	96	0	91	18	28	44	10	1.81
47287339--47287369	2	15.5	2	100	0	62	48	0	0	51	1.00
47287402--47287446	13	3.4	13	81	3	54	17	8	11	62	1.53
47288306--47288330	3	8.3	3	100	0	50	32	0	0	68	0.90
47290677--47290750	9	8.0	9	76	8	51	59	4	0	36	1.16
47290635--47290764	56	2.3	58	79	11	135	56	3	1	38	1.27
47290786--47290820	9	3.9	9	84	0	52	65	0	0	34	0.93
47291019--47291079	31	2.0	31	100	0	122	49	16	3	31	1.62
47297630--47297780	40	3.8	40	80	6	164	26	23	27	23	2.00
47297667--47297796	40	3.3	39	78	11	147	23	23	26	25	2.00
47305632--47305773	40	3.5	40	83	1	124	27	23	26	21	1.99
47305670--47305799	40	3.3	39	78	11	147	23	23	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47310394--47310435	21	2.0	20	82	13	50	38	23	16	21	1.93
47314277--47314449	46	3.7	46	76	7	136	28	20	27	23	1.99
47314375--47314494	46	2.6	44	78	12	127	29	20	26	23	1.99
47316374--47316599	43	5.3	43	94	0	373	24	29	19	26	1.99
47321226--47321262	3	12.3	3	100	0	74	32	0	0	67	0.91
47321775--47321828	8	7.1	8	81	8	51	29	0	1	68	1.00
47321804--47321828	7	3.6	7	100	0	50	36	0	0	64	0.94
47322419--47322482	7	9.0	7	75	3	56	46	26	3	23	1.67
47322416--47322466	15	3.5	15	78	5	59	47	29	1	21	1.62
47322596--47322666	37	1.9	37	85	0	97	22	0	30	46	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292