genome.fa.s9.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  173  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51502140--51502191	27	1.9	27	92	0	86	42	9	23	25	1.84
51508221--51508291	22	3.2	22	74	18	67	25	21	18	35	1.95
51511428--51511483	28	2.0	28	89	6	87	25	17	28	28	1.98
51511428--51511504	28	2.7	29	82	7	79	27	15	29	27	1.96
51514828--51514941	57	2.0	57	84	0	147	29	15	28	26	1.96
51517996--51518497	27	18.6	27	86	3	607	27	21	9	41	1.84
51519798--51519874	9	7.9	9	72	16	64	35	9	20	35	1.85
51519796--51519886	20	4.6	20	95	0	164	35	10	20	32	1.88
51519807--51519881	11	7.4	11	71	17	72	36	12	20	32	1.89
51519933--51520099	23	7.1	23	93	2	262	28	21	20	28	1.98
51519932--51520121	24	8.0	23	89	4	256	28	21	21	27	1.99
51519931--51520099	47	3.6	47	90	3	268	28	21	20	28	1.98
51523579--51523714	43	3.2	43	71	13	118	25	17	25	32	1.97
51526482--51526609	38	3.1	38	77	16	139	28	26	16	28	1.97
51526521--51526707	48	3.9	48	85	0	232	28	22	17	31	1.96
51526521--51526707	96	2.0	95	85	1	257	28	22	17	31	1.96
51531604--51531808	40	5.1	39	85	1	230	25	25	21	26	2.00
51531604--51531808	80	2.6	80	84	1	259	25	25	21	26	2.00
51539726--51539933	40	5.2	39	85	1	236	25	26	22	25	2.00
51539726--51539933	80	2.6	80	85	1	265	25	26	22	25	2.00
51548278--51548470	96	2.0	96	98	0	377	23	17	27	31	1.97
51550929--51551065	40	3.5	39	82	6	161	25	21	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51550917--51551092	79	2.2	79	84	6	223	25	23	26	24	2.00
51558952--51559124	40	4.3	40	82	2	177	26	21	24	26	2.00
51558950--51559124	80	2.2	81	82	3	210	26	22	25	26	2.00
51571624--51571661	14	2.9	13	81	11	51	57	10	13	18	1.63
51577366--51577455	27	3.3	27	85	3	119	40	17	10	32	1.83
51577366--51577472	54	2.0	54	81	7	128	38	20	10	30	1.86
51577461--51577725	27	9.8	27	86	0	233	29	21	7	41	1.81
51577461--51577725	54	4.9	54	84	1	334	29	21	7	41	1.81
51577407--51577752	81	4.3	81	82	1	334	31	20	8	39	1.83
51577704--51577850	54	2.7	53	78	10	163	40	22	7	29	1.81
51577515--51577853	81	4.2	81	79	5	229	34	20	7	37	1.81
51577719--51577869	81	1.9	81	90	2	241	43	21	7	27	1.80
51577717--51577934	27	8.0	27	77	6	143	41	19	8	30	1.82
51577986--51578078	27	3.4	27	88	2	125	35	20	24	19	1.96
51579327--51579383	9	5.9	9	73	15	51	35	8	21	35	1.84
51579325--51579387	20	3.2	20	95	0	117	36	12	19	31	1.89
51579442--51579776	24	14.0	23	88	6	449	28	21	21	28	1.98
51579968--51580069	38	3.1	31	78	17	114	34	14	22	28	1.94
51579983--51580092	38	2.9	38	91	4	168	33	12	24	29	1.92
51599274--51599403	54	2.4	54	84	5	147	31	20	10	37	1.87
51599301--51599431	27	4.9	27	81	1	147	29	19	9	41	1.82
51599390--51599469	27	3.0	27	84	0	88	40	22	3	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51599418--51599566	27	5.6	27	78	4	122	40	22	8	29	1.82
51599423--51599566	53	2.7	54	78	2	137	40	22	8	28	1.82
51599486--51599620	73	1.9	71	87	6	200	38	20	11	30	1.87
51599557--51599619	27	2.3	27	88	2	90	41	19	11	28	1.85
51599570--51599720	27	5.5	27	75	7	101	37	16	12	33	1.87
51599765--51599851	27	3.2	27	83	6	88	35	18	24	21	1.95
51600654--51600789	52	2.7	51	94	5	233	27	22	23	26	1.99
51600654--51600789	26	5.3	26	89	3	199	27	22	23	26	1.99
51600995--51601073	31	2.5	31	89	0	131	31	17	22	27	1.97
51609621--51609804	40	4.6	39	75	6	138	26	23	27	22	2.00
51609661--51609849	80	2.4	81	77	4	186	23	24	29	22	1.99
51614943--51615087	40	3.6	40	85	4	193	23	26	24	25	2.00
51617908--51617973	6	11.0	6	79	6	62	74	1	6	18	1.10
51617917--51617973	23	2.5	23	82	5	71	73	0	7	19	1.05
51625902--51626109	53	3.9	54	84	4	240	23	25	16	35	1.95
51625913--51626101	55	3.5	53	84	5	227	22	24	17	34	1.96
51625902--51626115	54	4.0	54	84	4	234	23	24	16	35	1.95
51626088--51626209	47	2.6	47	90	0	190	27	23	12	36	1.91
51628436--51628473	15	2.5	15	86	0	58	15	47	21	15	1.82
51630078--51630121	22	2.0	23	86	13	65	68	2	9	20	1.28
51632958--51633000	16	2.7	16	85	0	59	48	20	20	9	1.77
51633211--51633321	29	3.9	29	85	4	147	27	12	29	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51633211--51633321	57	1.9	57	87	3	161	27	12	29	30	1.93
51635891--51635949	22	2.6	22	81	7	66	37	18	20	23	1.94
51642558--51642604	20	2.3	20	78	7	51	42	0	4	53	1.20
51642572--51642612	14	3.1	14	73	20	52	41	0	0	58	0.98
51644111--51644168	27	2.1	27	100	0	116	51	6	3	37	1.46
51647940--51647996	20	2.9	19	76	5	60	52	17	24	5	1.65
51645771--51651088	733	7.2	733	82	4	6010	40	17	16	25	1.90
51649375--51649428	25	2.2	25	86	6	74	46	16	27	9	1.78
51658890--51659110	40	5.6	40	90	1	320	23	20	30	26	1.98
51664232--51664369	40	3.5	40	88	4	183	22	28	24	24	2.00
51672172--51672392	40	5.6	40	84	4	270	24	27	21	26	1.99
51676650--51676861	47	4.7	47	75	14	212	32	13	22	31	1.93
51676745--51676906	38	4.0	38	73	16	146	31	12	23	32	1.92
51676693--51676899	85	2.4	85	89	0	333	31	13	23	31	1.93
51679357--51679520	61	2.7	61	89	3	249	27	25	22	25	2.00
51681900--51681940	2	20.5	2	100	0	82	51	0	0	48	1.00
51682200--51682259	24	2.5	24	82	12	63	43	0	3	53	1.17
51683823--51683998	46	3.8	46	81	10	232	20	21	29	28	1.98
51683819--51683990	93	1.8	93	96	0	317	20	22	30	27	1.98
51686950--51687018	15	4.6	15	83	0	84	11	17	13	57	1.64
51686941--51687028	30	3.0	30	81	8	99	10	17	15	56	1.66
51689413--51689588	46	3.8	46	81	10	232	20	21	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51689409--51689580	93	1.8	93	96	0	317	20	22	30	27	1.98
51691088--51691117	15	2.0	15	93	0	51	36	0	0	63	0.95
51691366--51691416	26	2.0	26	88	7	77	35	3	5	54	1.43
51697420--51697493	33	2.3	33	86	6	98	22	24	14	37	1.92
51701612--51701666	27	2.0	27	100	0	110	52	7	18	21	1.69
51702630--51702777	51	2.9	51	91	2	244	29	25	14	31	1.95
51702813--51702912	24	4.0	24	74	14	94	26	24	13	37	1.91
51711719--51711894	46	3.8	46	77	4	192	30	28	19	22	1.98
51711727--51711898	93	1.8	93	91	2	283	29	29	19	22	1.98
51714294--51714334	15	2.7	15	88	0	64	58	9	19	12	1.61
51714296--51714343	15	3.2	15	79	5	53	56	14	16	12	1.68
51717266--51717439	45	3.8	45	80	9	199	28	28	21	21	1.99
51717274--51717444	93	1.8	92	92	1	288	27	29	21	21	1.99
51721782--51721898	44	2.7	43	79	8	132	23	17	25	32	1.97
51722672--51722747	34	2.2	34	83	4	100	25	19	26	28	1.99
51750821--51750876	28	2.0	28	96	0	103	30	30	3	35	1.75
51752268--51752297	15	1.9	16	93	6	53	53	6	20	20	1.67
51753194--51753351	66	2.4	66	77	5	162	31	15	28	24	1.96
51758019--51758148	40	3.3	39	76	8	136	23	27	23	24	2.00
51758035--51758186	40	3.8	40	78	6	148	22	26	23	27	1.99
51758035--51758184	80	1.9	80	83	8	198	22	26	24	27	1.99
51765783--51765989	40	5.2	39	85	2	227	25	26	21	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51765783--51765989	79	2.6	79	84	2	254	25	26	21	26	2.00
51774321--51774513	96	2.0	96	98	0	377	23	17	27	31	1.97
51783065--51783141	38	2.0	38	87	0	109	31	23	15	29	1.95
51783105--51783291	48	3.9	48	87	0	241	31	21	16	31	1.95
51787506--51787638	67	2.0	67	86	2	187	22	17	30	29	1.96
51788619--51788644	4	6.5	4	100	0	52	76	0	23	0	0.78
51790359--51790508	67	2.2	67	81	8	171	32	17	28	21	1.96
51790383--51790566	67	2.8	64	77	8	194	29	17	29	22	1.97
51794807--51794956	67	2.2	67	81	8	171	32	17	28	21	1.96
51794831--51795014	67	2.8	64	77	8	194	29	17	29	22	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292