genome.fa.s9.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  165  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48970658--48970717	20	3.0	20	90	0	102	33	20	11	35	1.88
48970760--48970807	25	1.9	25	86	0	69	25	16	25	33	1.96
48970953--48971072	24	5.0	24	88	7	163	25	23	22	28	1.99
48971123--48971182	20	3.0	20	90	0	102	33	20	11	35	1.88
48971225--48971271	24	1.9	25	86	4	69	25	14	25	34	1.94
48975725--48975788	31	2.1	31	96	0	119	23	21	15	39	1.92
48975980--48976121	24	6.0	24	91	5	209	26	22	22	28	1.99
48975980--48976120	47	3.0	48	90	6	207	26	22	22	28	1.99
48975979--48976121	71	2.0	71	89	5	218	25	22	22	29	1.99
48976172--48976231	20	3.0	20	90	0	102	33	20	11	35	1.88
48981095--48981214	45	2.7	44	84	6	134	19	20	16	43	1.88
48981141--48981355	90	2.4	89	81	6	220	21	20	17	40	1.92
48981183--48981357	45	3.9	45	85	1	208	22	20	18	38	1.93
48981419--48981452	15	2.3	15	90	10	52	55	8	0	35	1.31
48986126--48986184	30	2.0	30	86	0	82	37	11	22	28	1.89
48986501--48986790	48	6.0	48	79	2	321	29	17	27	25	1.98
48986501--48986782	96	2.9	96	87	2	377	29	17	26	25	1.98
48995819--48995846	14	2.0	14	100	0	56	57	7	14	21	1.61
48997474--48997520	20	2.2	21	77	11	51	23	23	23	29	1.99
48998494--48998540	18	2.6	17	78	15	51	27	12	21	38	1.90
48999923--48999952	2	15.0	2	100	0	60	50	0	0	50	1.00
48999947--48999980	12	2.8	12	83	16	52	52	5	0	41	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49005591--49005643	24	2.2	24	93	0	88	41	7	11	39	1.69
49005598--49005645	24	2.0	24	100	0	96	41	8	8	41	1.65
49006799--49006839	21	2.0	21	95	0	73	53	26	4	14	1.61
49016903--49016937	17	2.1	17	100	0	70	37	11	0	51	1.38
49019937--49020131	47	4.1	47	87	6	275	33	10	28	27	1.89
49019937--49020131	98	2.0	94	90	5	302	33	10	28	27	1.89
49020105--49020241	46	3.0	46	89	0	202	34	8	31	25	1.86
49038146--49038177	16	1.9	17	93	6	57	37	31	6	25	1.81
49043547--49043638	27	3.4	27	83	5	114	29	20	6	43	1.77
49043534--49043638	54	1.9	54	82	3	131	33	20	6	40	1.78
49043637--49043766	27	4.8	26	77	6	109	39	19	11	30	1.87
49043637--49043766	54	2.4	54	82	5	147	39	19	11	30	1.87
49043670--49043795	27	4.7	27	83	5	139	42	19	7	30	1.78
49043670--49043879	54	3.9	54	75	8	183	40	19	9	31	1.82
49043749--49043856	27	3.9	27	77	13	103	42	17	7	32	1.77
49043910--49043973	26	2.4	26	82	7	76	35	17	25	21	1.95
49044786--49044854	25	2.8	25	93	0	111	24	24	23	27	2.00
49045076--49045153	31	2.5	31	97	0	147	26	19	25	28	1.99
49055509--49055600	28	3.3	28	66	19	66	27	21	19	31	1.97
49055474--49055655	54	3.4	54	81	4	222	27	23	20	29	1.99
49057627--49057656	10	3.0	10	95	0	51	46	30	10	13	1.75
49058507--49058569	23	2.7	23	76	14	58	36	20	20	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49061828--49061864	18	2.1	18	94	0	65	27	8	10	54	1.63
49062332--49062407	24	3.2	24	64	14	57	26	53	2	17	1.56
49062313--49062384	36	2.0	36	86	0	99	26	51	2	19	1.60
49062376--49062540	66	2.5	66	91	0	258	28	45	12	13	1.80
49062514--49062571	30	1.9	30	92	0	98	25	50	1	22	1.59
49062532--49062612	24	3.4	24	84	0	117	24	49	1	24	1.58
49062651--49062782	57	2.3	57	86	0	174	29	23	25	21	1.99
49062791--49062817	3	9.0	3	100	0	54	33	66	0	0	0.92
49065078--49065109	16	2.0	16	93	0	55	59	9	0	31	1.29
49069104--49069223	43	2.8	44	79	9	115	33	25	17	24	1.96
49076738--49076910	43	4.0	43	78	10	147	33	26	16	23	1.96
49078905--49079033	50	2.5	51	82	3	145	25	18	26	29	1.98
49078963--49079078	51	2.3	51	83	0	133	30	17	21	31	1.96
49083838--49083900	33	1.9	33	96	0	117	33	12	9	44	1.75
49086848--49086910	32	2.0	32	83	0	81	22	22	36	19	1.95
49091433--49091464	13	2.5	13	100	0	64	21	15	25	37	1.93
49096334--49096391	18	3.4	18	69	26	63	29	13	0	56	1.38
49096327--49096391	32	2.0	32	100	0	130	32	15	0	52	1.43
49104456--49104538	33	2.7	30	82	10	112	38	8	12	40	1.73
49107982--49108033	25	2.0	25	85	7	68	32	1	26	38	1.68
49109794--49109980	99	1.9	97	80	10	218	33	19	11	35	1.88
49110077--49110223	19	7.2	19	66	23	59	59	2	1	36	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49110072--49110128	19	2.9	19	79	10	62	64	0	0	35	0.93
49110082--49110149	28	2.4	29	82	9	95	55	0	0	44	0.99
49110077--49110214	10	14.4	9	67	15	64	60	2	1	35	1.21
49110173--49110223	10	5.3	10	74	9	52	58	1	1	37	1.20
49110085--49110223	28	4.9	27	71	15	93	58	2	1	37	1.22
49110476--49110580	10	10.2	10	68	16	63	32	1	0	64	1.11
49110549--49110623	9	8.4	8	77	15	51	28	0	2	69	1.02
49110539--49110612	37	1.9	39	86	5	107	32	0	2	64	1.07
49110760--49111011	91	2.8	89	80	6	310	35	10	17	36	1.84
49110764--49111011	90	2.7	89	80	6	309	35	10	17	36	1.84
49111692--49111720	6	4.8	6	100	0	58	51	17	17	13	1.76
49122419--49122457	19	2.1	19	90	0	60	64	5	0	30	1.15
49123734--49123786	15	3.3	15	73	19	52	43	0	1	54	1.11
49123887--49123921	18	1.9	18	88	0	52	62	2	0	34	1.10
49125775--49125813	20	2.0	20	94	0	69	43	15	12	28	1.83
49126660--49126694	2	17.5	2	93	0	52	51	0	5	42	1.25
49135286--49135354	35	2.0	34	83	8	86	43	0	1	55	1.08
49142105--49142167	33	1.9	33	96	0	117	39	17	14	28	1.89
49148885--49148910	6	4.3	6	100	0	52	19	30	15	34	1.93
49150907--49150955	23	2.1	24	88	3	73	55	2	0	42	1.11
49152985--49153141	69	2.3	68	80	6	183	37	12	5	44	1.66
49153672--49153907	89	2.6	91	76	7	239	36	14	8	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49153861--49153987	66	1.9	66	86	0	182	35	14	6	43	1.71
49155211--49155258	9	5.4	9	83	14	64	50	25	6	18	1.70
49161967--49162133	67	2.4	69	78	5	169	33	19	3	43	1.69
49164057--49164184	45	2.9	45	84	1	186	23	23	12	40	1.88
49165575--49165601	5	5.4	5	100	0	54	0	18	18	62	1.32
49170070--49170118	21	2.2	21	78	7	53	46	2	2	48	1.25
49177651--49177699	20	2.5	20	93	0	80	24	6	20	48	1.72
49180877--49180906	5	6.0	5	100	0	60	80	0	20	0	0.72
49181748--49181812	26	2.5	27	85	7	89	18	13	29	38	1.89
49181766--49181823	26	2.2	26	84	0	71	24	10	24	41	1.86
49196832--49196891	30	2.0	30	93	0	102	58	15	1	25	1.46
49197552--49197619	33	2.1	32	94	2	118	54	14	4	26	1.59
49199035--49199111	23	3.2	23	66	10	64	38	0	20	40	1.53
49199013--49199111	49	2.0	49	96	0	180	38	1	20	40	1.59
49199011--49199094	26	3.4	26	67	11	77	38	1	20	40	1.60
49205195--49205362	40	4.2	40	79	1	158	22	27	23	26	2.00
49205211--49205360	80	1.9	80	84	5	205	21	27	24	26	1.99
49213198--49213365	40	4.2	40	79	1	158	22	27	23	26	2.00
49213214--49213363	80	1.9	80	84	5	205	21	27	24	26	1.99
49218647--49218709	24	2.7	24	80	2	74	25	12	17	44	1.84
49218647--49218716	23	3.0	23	78	2	77	27	11	17	44	1.82
49219500--49219566	25	2.9	23	72	14	57	58	0	2	38	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49224902--49225009	34	3.2	33	88	7	146	39	0	14	45	1.45
49224885--49225010	35	3.6	34	82	6	155	40	0	14	45	1.45
49230390--49230446	28	2.0	28	83	6	71	52	0	3	43	1.18
49230495--49230530	17	2.1	17	94	0	63	75	0	19	5	1.00
49231471--49231581	41	2.7	42	83	8	140	33	20	25	20	1.97
49231600--49231682	37	2.2	36	87	6	121	50	31	0	18	1.47
49231805--49231861	7	8.0	7	78	3	51	22	0	28	49	1.50
49231805--49231864	14	4.1	15	78	8	70	21	0	30	48	1.51
49249604--49249657	6	8.7	6	76	15	56	20	1	3	74	1.07
49255272--49255660	161	2.4	162	80	5	441	41	7	17	33	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292