genome.fa.s9.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  148  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44027657--44027864	40	5.2	39	84	1	218	25	25	21	26	2.00
44027657--44027864	80	2.6	80	83	1	247	25	25	21	26	2.00
44037281--44037328	25	1.9	25	86	0	69	33	25	16	25	1.96
44037371--44037431	20	3.0	20	92	0	104	34	11	21	32	1.89
44037481--44037623	24	6.0	24	91	4	209	28	22	22	26	1.99
44037481--44037623	47	3.0	47	90	5	207	28	22	22	26	1.99
44037481--44037624	71	2.0	72	89	4	220	29	22	22	26	1.99
44037815--44037877	31	2.1	31	90	3	101	36	15	23	23	1.94
44048470--44048652	40	4.6	39	77	7	145	22	24	29	23	1.99
44048475--44048657	79	2.3	80	80	5	185	20	24	30	24	1.99
44053188--44053371	40	4.6	40	76	4	138	22	24	29	23	1.99
44056122--44056178	17	3.5	17	71	22	50	64	0	1	33	1.04
44063557--44063590	7	4.9	7	100	0	68	0	11	14	73	1.10
44066147--44066194	25	1.9	25	86	0	69	33	25	16	25	1.96
44066233--44066309	9	7.9	9	70	16	55	33	9	22	35	1.85
44066231--44066313	20	4.2	20	95	0	148	34	12	20	32	1.89
44066368--44066482	23	5.1	22	86	10	162	29	18	21	30	1.97
44066367--44066482	45	2.6	45	85	12	166	30	18	21	30	1.97
44066696--44066776	31	2.6	31	88	5	119	34	17	25	22	1.95
44074264--44074310	24	2.0	24	86	0	67	31	25	17	25	1.97
44074349--44074425	9	7.9	9	70	16	55	33	9	22	35	1.85
44074347--44074429	20	4.2	20	95	0	148	34	12	20	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44074483--44074602	47	2.6	48	87	11	187	28	20	22	29	1.98
44074483--44074623	23	6.0	24	86	9	193	27	20	23	28	1.99
44074818--44074899	31	2.6	32	86	7	114	35	17	25	21	1.95
44079093--44079350	46	5.6	45	75	12	175	25	27	18	28	1.98
44079087--44079352	94	2.8	92	79	10	292	25	27	18	28	1.98
44083047--44083221	46	3.8	46	76	7	201	28	28	20	22	1.98
44083055--44083226	93	1.8	93	93	0	299	27	29	20	22	1.98
44083052--44083241	46	4.1	46	70	15	142	28	28	20	22	1.98
44087636--44087695	31	1.9	31	89	0	93	26	21	15	36	1.93
44087884--44088025	24	6.0	24	90	5	218	29	20	21	28	1.98
44087905--44088024	23	5.1	23	93	3	204	30	20	20	28	1.97
44087905--44088025	47	2.6	47	97	0	224	30	19	20	28	1.97
44095947--44096136	47	4.1	46	93	2	299	30	21	19	28	1.97
44095947--44096136	23	8.1	23	92	2	299	30	21	19	28	1.97
44095926--44096136	70	3.0	70	92	2	325	29	21	19	28	1.98
44095926--44096137	47	4.5	48	89	5	292	29	21	19	28	1.98
44096187--44096253	20	3.3	20	89	0	107	32	20	13	32	1.92
44102723--44102763	22	1.9	21	85	5	55	60	12	9	17	1.57
44104920--44104945	13	2.0	13	100	0	52	38	0	46	15	1.46
44118659--44118739	15	5.5	15	75	8	76	56	16	17	9	1.65
44124319--44124561	99	2.4	100	85	2	319	25	18	28	27	1.98
44124326--44124550	49	4.5	49	88	2	306	25	17	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44132397--44132425	14	2.1	14	100	0	58	44	0	20	34	1.52
44142615--44142662	25	1.9	25	86	0	69	33	25	16	25	1.96
44142705--44142765	20	3.0	20	92	0	104	34	11	21	32	1.89
44142815--44142958	24	6.0	24	92	2	209	27	22	22	27	1.99
44143126--44143188	31	2.1	31	90	3	101	36	15	23	23	1.94
44144402--44144518	42	2.8	42	83	7	150	29	16	27	26	1.97
44148103--44148217	29	4.0	29	84	6	137	28	28	15	26	1.96
44148436--44148486	24	2.1	24	85	0	66	13	19	17	49	1.80
44152628--44152746	29	4.2	29	87	6	163	28	30	15	26	1.96
44159534--44159706	89	1.9	89	96	2	321	43	20	3	32	1.68
44160336--44160478	43	3.3	43	85	0	205	31	17	16	34	1.93
44166853--44166992	43	3.3	43	86	0	199	33	17	15	32	1.92
44168403--44168428	13	2.0	13	100	0	52	15	7	30	46	1.74
44175355--44175415	33	1.9	31	90	6	95	68	8	1	21	1.24
44175355--44175428	31	2.3	33	86	4	89	67	8	2	21	1.29
44176036--44176108	36	2.0	36	100	0	146	21	19	21	36	1.95
44181820--44181870	25	2.0	25	85	7	68	29	21	19	29	1.98
44181914--44181958	10	4.4	10	86	5	63	37	17	13	31	1.89
44181955--44181982	2	14.0	2	100	0	56	50	0	0	50	1.00
44182019--44182087	25	2.8	25	90	0	102	27	26	21	24	1.99
44182030--44182100	25	2.9	25	80	14	76	29	25	19	25	1.99
44182307--44182381	31	2.4	32	91	4	118	32	18	26	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44183706--44183766	30	2.0	30	87	0	86	39	8	22	29	1.83
44187730--44187831	29	3.5	28	76	7	89	27	34	17	20	1.95
44195684--44195785	29	3.5	28	76	7	89	27	34	17	20	1.95
44203738--44203782	10	4.4	10	86	13	65	33	17	15	33	1.92
44203827--44203895	25	2.8	25	88	4	95	26	23	24	26	2.00
44203827--44203908	25	3.4	25	81	11	82	29	20	24	25	1.99
44204117--44204195	31	2.5	31	95	0	140	29	16	29	25	1.97
44205952--44206040	25	3.6	25	78	0	79	28	23	21	26	1.99
44207263--44207385	43	2.9	42	84	4	131	25	14	27	32	1.95
44212021--44212086	27	2.4	27	87	0	87	40	19	15	24	1.90
44213486--44213596	40	2.8	40	86	9	147	21	28	26	23	1.99
44220937--44221047	40	2.8	40	86	9	147	21	28	26	23	1.99
44222493--44223172	27	25.3	27	83	3	791	38	18	17	25	1.93
44222493--44223172	54	12.7	54	87	0	909	38	18	17	25	1.93
44223754--44223821	27	2.7	24	76	14	73	22	25	20	32	1.98
44223768--44223859	27	3.4	26	82	5	103	20	22	20	35	1.96
44223977--44224061	6	13.8	6	69	14	57	18	20	12	48	1.81
44223995--44224044	19	2.6	19	96	0	91	18	24	16	42	1.89
44227945--44228066	43	2.8	44	83	2	131	27	18	22	31	1.97
44237572--44237599	2	14.0	2	100	0	56	50	0	0	50	1.00
44237815--44237977	39	4.2	39	83	0	218	23	24	18	33	1.97
44248161--44248237	38	2.0	38	100	0	154	32	15	15	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44249771--44249811	21	2.0	21	85	0	55	46	0	2	51	1.14
44249850--44249884	18	1.9	18	88	0	52	31	5	2	60	1.35
44249937--44250019	32	2.7	30	74	5	76	54	13	4	27	1.59
44253098--44253156	30	2.0	30	96	0	109	30	8	13	47	1.73
44253375--44253567	98	2.0	98	94	0	341	30	16	19	34	1.94
44255937--44255984	24	2.1	24	84	7	64	66	2	18	12	1.33
44256223--44256253	2	15.5	2	93	0	53	51	0	0	48	1.00
44256905--44256934	14	2.1	14	100	0	60	43	0	20	36	1.52
44260520--44260550	15	2.0	16	93	6	55	38	0	0	61	0.96
44264541--44264569	14	2.1	14	100	0	58	27	27	6	37	1.82
44267192--44267236	18	2.5	18	96	0	81	42	6	17	33	1.76
44275781--44275815	17	2.1	17	100	0	70	40	14	11	34	1.82
44283821--44283868	20	2.5	19	79	3	51	31	4	2	62	1.26
44284827--44284866	17	2.4	17	87	8	55	35	0	0	65	0.93
44290247--44290294	20	2.4	20	100	0	96	58	0	10	31	1.32
44291839--44291900	29	2.1	30	91	8	101	58	11	4	25	1.53
44292474--44292520	9	5.2	9	92	0	76	46	17	10	25	1.79
44292477--44292520	18	2.4	18	100	0	88	45	15	11	27	1.81
44292720--44292746	9	3.0	9	100	0	54	0	88	0	11	0.50
44293278--44293315	19	2.0	19	89	0	58	31	13	23	31	1.93
44294172--44294343	86	2.0	84	87	4	247	25	18	2	53	1.56
44294181--44294375	86	2.3	86	83	5	236	23	18	3	54	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44295492--44295544	16	3.6	15	78	21	67	60	7	1	30	1.35
44297333--44297603	42	6.4	43	76	9	191	30	24	18	26	1.98
44298428--44298456	13	2.1	14	93	6	51	55	10	0	34	1.34
44303552--44303662	9	12.6	9	81	5	120	32	0	21	45	1.52
44304225--44304255	2	15.5	2	100	0	62	51	0	0	48	1.00
44304732--44304784	24	2.2	24	93	0	88	50	3	3	41	1.38
44306100--44306195	47	2.0	47	93	0	165	40	14	10	34	1.80
44307265--44307427	29	5.6	29	71	11	102	45	31	0	22	1.57
44307301--44307339	15	2.7	14	84	7	51	46	28	0	25	1.53
44307294--44307347	22	2.5	22	85	5	76	48	27	0	24	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292