Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  229  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66671250--66671274
13
1.9
13
100
0
50
72
0
0
28
0.86
66673815--66673874
29
2.1
29
100
0
120
41
20
10
28
1.84
66691657--66691703
23
2.0
23
100
0
94
61
0
21
17
1.34
66693554--66693610
29
1.9
30
85
3
80
40
10
22
26
1.86
66700654--66700687
5
6.6
5
93
6
59
38
0
0
61
0.96
66700722--66700782
30
2.0
30
81
9
70
59
4
34
1
1.29
66702250--66702360
38
2.8
40
75
8
111
23
20
26
29
1.99
66702250--66702384
39
3.4
39
71
11
98
24
20
26
28
1.99
66707874--66708051
89
2.0
89
100
0
356
29
8
20
41
1.82
66711507--66711554
24
2.0
24
100
0
96
37
4
20
37
1.72
66715333--66715419
27
3.1
27
78
6
68
56
2
2
39
1.25
66721981--66722031
22
2.3
23
89
3
77
17
25
3
52
1.61
66726223--66726280
15
3.6
15
72
17
53
50
1
1
46
1.22
66726414--66726455
13
2.9
15
79
13
52
21
7
7
64
1.43
66727636--66727695
10
6.0
10
86
7
77
68
1
6
23
1.22
66728323--66728355
5
6.8
5
93
6
59
36
0
0
63
0.95
66728352--66728533
96
1.9
97
83
3
242
32
26
13
26
1.94
66729670--66729752
15
5.4
15
71
25
59
71
1
4
22
1.12
66729670--66729740
5
13.8
5
74
11
63
70
1
5
22
1.16
66735099--66735188
43
2.1
43
85
0
117
28
13
22
35
1.92
66735112--66735202
43
2.1
43
81
4
103
30
16
19
32
1.94
66737792--66737922
69
1.9
71
88
6
205
47
6
19
26
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66737849--66737978
57
2.3
57
90
2
199
49
6
19
25
1.71
66741281--66741323
20
2.1
21
83
12
54
48
0
27
23
1.51
66757700--66757739
2
20.5
2
85
14
57
47
2
0
50
1.14
66759438--66759513
37
2.1
37
97
0
143
61
2
6
28
1.34
66760499--66760541
10
4.3
10
94
5
70
9
9
0
81
0.88
66760515--66760570
26
2.2
26
84
12
73
7
17
0
75
1.03
66760515--66760573
10
5.5
11
82
11
52
6
18
0
74
1.03
66760593--66760645
22
2.5
22
84
3
72
11
13
1
73
1.18
66760594--66760654
21
3.0
20
81
11
61
13
11
1
73
1.16
66762278--66762407
65
2.0
65
98
0
251
30
19
29
20
1.97
66763242--66763295
22
2.5
23
91
8
87
57
0
7
35
1.27
66763655--66763706
3
17.3
3
100
0
104
67
0
0
32
0.91
66765399--66765913
228
2.3
226
85
2
680
29
20
18
31
1.96
66769354--66769450
48
2.0
48
100
0
194
20
20
26
31
1.97
66776836--66776860
13
1.9
13
100
0
50
52
8
16
24
1.70
66778362--66778422
3
20.3
3
100
0
122
67
0
0
32
0.91
66781103--66781156
17
3.1
17
80
20
67
64
0
1
33
1.04
66781115--66781181
17
3.9
16
75
14
55
62
1
1
34
1.13
66785126--66785173
16
3.1
14
80
14
51
20
2
2
75
1.02
66790063--66790098
15
2.4
15
90
0
54
30
11
0
58
1.33
66792117--66792160
23
2.0
22
86
4
61
47
4
0
47
1.22
66796004--66796427
95
4.4
95
83
3
469
28
17
29
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66796013--66796279
45
5.7
45
73
8
201
28
16
28
26
1.97
66796060--66796379
50
6.6
49
75
8
208
29
17
27
24
1.98
66801265--66801460
39
5.0
39
93
0
338
20
24
31
23
1.98
66806947--66807064
39
3.0
39
91
0
191
20
22
31
25
1.98
66820059--66820120
32
1.9
32
93
0
106
35
3
9
51
1.51
66820241--66820286
24
1.9
24
91
8
76
54
0
6
39
1.26
66820353--66820405
6
8.8
6
95
0
88
45
16
0
37
1.48
66823925--66823949
11
2.3
11
100
0
50
8
28
0
64
1.22
66825202--66825253
25
2.1
25
85
0
68
36
9
15
38
1.80
66828086--66828236
40
3.8
40
78
8
139
27
24
26
21
2.00
66828083--66828258
40
4.4
40
72
13
130
27
22
26
22
1.99
66830964--66831126
76
2.1
76
95
0
290
24
26
12
35
1.92
66831012--66831126
37
3.1
37
71
5
122
24
26
13
34
1.93
66833729--66833926
60
3.3
60
75
4
193
51
12
12
23
1.73
66836243--66836276
2
17.0
2
100
0
68
50
0
0
50
1.00
66839557--66839665
26
4.2
26
95
1
184
33
4
24
36
1.76
66845362--66845445
26
3.2
26
96
0
150
33
4
25
36
1.77
66846922--66846973
25
2.0
26
82
10
63
36
23
15
25
1.93
66848980--66849242
143
1.9
141
93
1
454
29
19
13
36
1.91
66852142--66852166
2
12.5
2
100
0
50
48
0
0
52
1.00
66854709--66854739
12
2.5
12
94
5
53
80
0
19
0
0.71
66855625--66855733
37
2.8
40
76
9
116
26
17
22
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66861417--66861489
29
2.6
28
81
12
80
39
4
0
56
1.19
66861648--66861814
3
54.7
3
77
11
137
28
4
2
64
1.27
66861945--66861977
15
2.3
15
89
5
50
27
9
0
63
1.24
66865598--66865649
19
2.7
19
85
5
61
25
17
5
51
1.67
66873735--66874412
44
15.3
44
65
19
179
30
18
25
26
1.98
66873758--66874163
88
4.6
87
72
13
296
29
17
26
26
1.98
66873911--66874407
45
11.2
44
66
15
163
29
18
25
26
1.98
66873732--66874161
176
2.4
176
87
5
541
30
17
26
26
1.98
66873955--66874493
133
4.1
133
78
8
517
30
18
25
25
1.98
66874658--66874975
140
2.3
141
92
1
514
37
16
18
27
1.93
66874614--66874878
45
5.8
45
73
9
187
33
16
21
29
1.95
66874660--66875019
140
2.6
140
89
1
434
36
17
19
26
1.93
66876364--66876563
3
65.7
3
69
16
83
30
8
1
60
1.34
66876520--66876619
23
4.4
22
68
14
69
29
8
4
59
1.44
66876531--66876584
20
2.5
23
79
11
60
24
11
3
61
1.46
66876700--66876842
3
46.7
3
68
14
62
27
6
2
63
1.32
66878153--66878268
57
2.0
57
100
0
232
42
17
10
30
1.82
66882677--66882709
5
6.6
5
86
13
50
81
0
0
18
0.68
66889005--66889168
43
3.9
42
81
9
181
24
17
25
32
1.97
66889005--66889172
85
2.0
85
82
6
207
24
17
25
33
1.96
66893488--66893529
12
3.4
12
75
18
50
11
33
0
54
1.37
66893488--66893538
25
2.0
25
96
0
93
17
29
0
52
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66895080--66895114
11
2.8
13
83
16
56
57
20
8
14
1.63
66895964--66896070
6
17.8
6
79
11
112
47
14
16
20
1.82
66895943--66896070
30
4.3
29
82
7
123
47
14
17
20
1.82
66896192--66896261
27
2.6
26
80
6
77
37
18
24
20
1.94
66896212--66896269
27
2.1
27
81
6
64
36
25
20
17
1.94
66896426--66896484
22
2.7
22
81
0
64
32
22
25
20
1.98
66896853--66897021
27
6.3
27
84
0
203
25
19
19
35
1.95
66896852--66897007
81
1.9
81
88
0
231
25
19
19
35
1.96
66897026--66897570
27
20.2
27
86
2
691
41
9
22
26
1.84
66899703--66899816
56
2.0
56
98
0
219
41
21
10
26
1.86
66904742--66904814
35
2.1
35
100
0
146
53
8
10
27
1.64
66905639--66905678
20
1.9
20
85
10
53
32
0
0
67
0.91
66908722--66908855
67
2.0
69
85
5
184
39
4
5
50
1.45
66908765--66908813
20
2.8
17
75
19
55
42
4
2
51
1.32
66911591--66911656
23
3.0
23
78
8
66
69
3
3
24
1.16
66913225--66913284
30
2.0
30
90
0
93
58
13
1
26
1.45
66918738--66918793
28
2.0
28
89
0
85
37
17
19
25
1.94
66920722--66920753
3
10.7
3
100
0
64
65
0
0
34
0.93
66921513--66921545
17
2.1
16
88
11
50
30
0
0
69
0.88
66921592--66921650
21
2.8
22
85
7
70
23
0
6
69
1.12
66921621--66921680
26
2.4
24
83
8
75
28
0
3
68
1.05
66922577--66922635
29
2.0
29
93
0
100
40
5
22
32
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66926056--66926103
24
2.0
24
95
0
87
41
6
31
20
1.77
66933104--66933133
15
1.9
16
93
6
53
40
16
13
30
1.87
66934710--66934752
21
2.0
21
100
0
86
58
0
0
41
0.98
66935197--66935265
31
2.2
31
84
0
84
37
14
7
40
1.74
66937959--66938022
3
21.3
3
92
6
103
31
1
0
67
1.00
66938241--66938273
2
16.5
2
93
0
57
45
0
3
51
1.16
66938751--66939225
256
1.9
256
87
0
700
30
14
18
36
1.91
66950705--66951142
227
1.9
227
85
0
597
30
18
22
27
1.97
66952774--66952841
3
23.0
3
95
3
120
30
1
0
67
0.99
66953587--66954043
253
1.8
253
89
1
720
29
14
18
37
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292