Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  230  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66959346--66959387
22
2.0
21
86
13
59
52
4
0
42
1.22
66966124--66966214
31
3.1
27
73
14
92
27
3
1
68
1.12
66966141--66966194
20
2.7
20
79
2
63
35
1
1
61
1.18
66967408--66967460
2
26.5
2
100
0
106
50
0
0
49
1.00
66968786--66968858
34
2.1
34
92
5
121
39
23
9
27
1.85
66971996--66972042
21
2.3
20
85
7
67
61
10
2
25
1.39
66971996--66972037
21
2.0
21
90
4
68
64
11
2
21
1.38
66975242--66975275
14
2.4
14
90
5
50
17
0
0
82
0.67
66975267--66975443
96
1.8
96
90
2
284
31
24
15
28
1.95
66982319--66982361
22
2.0
22
100
0
86
34
18
4
41
1.71
66983852--66983925
6
10.6
7
80
15
66
72
0
2
24
0.97
66983862--66983902
4
10.2
4
85
15
50
70
0
0
29
0.87
66983856--66983922
17
4.1
17
78
16
70
73
0
2
23
0.97
66983856--66983925
7
10.5
6
79
11
50
72
0
2
24
0.98
66988392--66988567
46
3.8
46
77
12
189
30
29
19
19
1.97
66988400--66988570
93
1.8
93
91
0
279
29
29
20
19
1.97
66991353--66991393
20
2.0
20
90
0
64
39
19
9
31
1.84
66992500--66992665
46
3.7
46
75
17
175
30
28
19
21
1.97
66992508--66992684
91
2.0
89
85
5
239
30
29
19
20
1.97
66995062--66995139
15
5.3
15
76
11
72
56
14
17
11
1.67
66995063--66995139
30
2.6
29
80
10
84
57
14
16
11
1.66
66995063--66995130
15
4.6
15
81
5
77
58
11
17
11
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66998043--66998212
93
1.8
91
88
2
259
27
28
21
22
1.99
66998036--66998207
46
3.8
45
77
10
179
28
27
20
23
1.99
66998084--66998227
46
3.1
46
70
14
125
29
27
20
23
1.99
66999981--67000013
17
2.0
17
94
5
59
36
15
0
48
1.45
67000281--67000554
46
6.0
46
90
0
361
21
24
14
39
1.91
67006208--67006284
40
2.0
40
94
2
138
61
3
11
23
1.47
67007019--67007067
10
4.9
10
85
5
64
65
0
10
24
1.23
67010459--67010491
6
5.5
6
100
0
66
18
15
48
18
1.81
67018479--67018550
34
2.2
34
85
5
94
36
2
0
61
1.11
67018666--67018690
11
2.3
11
100
0
50
52
8
12
28
1.66
67022699--67022724
1
26.0
1
100
0
52
100
0
0
0
0.00
67028172--67028279
24
4.4
23
74
15
76
54
4
9
31
1.52
67028335--67028365
16
1.9
16
93
0
53
54
19
0
25
1.44
67028369--67028470
22
4.8
22
79
12
97
57
3
3
34
1.35
67028369--67028459
21
4.2
21
80
14
80
58
4
4
32
1.38
67028365--67028482
45
2.6
46
80
11
129
59
3
3
33
1.31
67028388--67028486
22
4.6
21
77
20
80
60
4
2
33
1.27
67028369--67028486
43
2.8
41
79
13
121
59
3
3
33
1.31
67028397--67028485
20
4.4
20
78
14
76
60
3
2
33
1.25
67028684--67028716
17
2.0
16
94
5
57
51
12
0
36
1.39
67028717--67028880
3
54.7
3
66
18
65
59
3
6
31
1.39
67029426--67029460
2
17.5
2
87
0
52
45
0
5
48
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67030717--67030751
18
1.9
18
94
0
61
60
8
2
28
1.41
67030792--67030883
29
3.1
29
84
1
121
29
25
3
42
1.70
67047616--67047648
2
16.5
2
100
0
66
48
0
0
51
1.00
67050063--67050184
45
2.7
46
89
3
194
40
12
22
23
1.88
67054490--67054535
23
2.0
23
100
0
92
21
8
13
56
1.63
67056191--67056250
21
3.1
19
78
11
59
35
3
3
58
1.31
67056179--67056253
10
7.5
10
76
11
73
37
2
2
57
1.27
67058981--67059019
18
2.2
17
90
4
60
43
2
0
53
1.14
67059091--67059120
7
4.3
7
100
0
60
40
0
13
46
1.43
67064832--67064966
67
2.0
67
100
0
270
36
13
31
19
1.90
67071335--67071396
31
2.0
31
87
6
90
43
12
8
35
1.73
67072807--67072846
20
2.0
20
85
14
55
57
5
5
32
1.42
67097928--67097960
2
16.5
2
93
0
57
48
3
0
48
1.17
67098561--67098629
29
2.4
29
77
15
72
42
13
7
37
1.71
67103522--67103551
2
15.0
2
100
0
60
50
0
0
50
1.00
67104469--67104499
16
2.0
16
93
6
55
48
0
12
38
1.42
67104704--67104729
6
4.3
6
100
0
52
19
15
15
50
1.79
67108838--67109113
46
6.0
46
95
0
480
37
14
25
22
1.92
67108852--67109150
92
3.2
93
89
1
442
40
15
23
21
1.90
67108852--67109150
138
2.2
138
90
1
456
40
15
23
21
1.90
67110783--67110829
24
2.0
24
83
8
60
27
34
17
21
1.95
67115626--67115653
8
3.5
8
100
0
56
21
0
10
67
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67118416--67118504
18
4.9
18
83
0
106
32
23
13
30
1.93
67118415--67118504
36
2.5
36
87
0
126
32
23
13
31
1.93
67125538--67125581
12
3.6
12
87
3
61
52
0
0
47
1.00
67127798--67127839
21
2.0
21
100
0
84
57
4
14
23
1.56
67131885--67131924
3
13.3
3
100
0
80
65
0
0
35
0.93
67133822--67133853
12
2.7
12
100
0
64
53
0
15
31
1.43
67135781--67135921
54
2.6
54
94
0
246
24
17
24
32
1.97
67136500--67136544
23
2.0
23
82
8
56
37
8
13
40
1.76
67140237--67140320
30
3.0
29
72
20
79
35
0
19
45
1.50
67140467--67140500
16
2.1
16
89
10
52
55
0
8
35
1.31
67140851--67140921
18
3.9
18
74
9
63
30
9
15
43
1.79
67140856--67140926
36
1.9
37
85
2
99
30
9
14
45
1.77
67140902--67140952
26
2.0
26
88
0
75
35
11
17
35
1.87
67140931--67140987
18
3.2
17
76
14
53
36
7
15
40
1.75
67140871--67140987
62
1.9
62
83
3
155
33
9
15
41
1.79
67140928--67141014
36
2.4
36
79
9
97
39
8
12
40
1.73
67141646--67141684
3
13.0
3
100
0
78
66
0
0
33
0.92
67152928--67152957
13
2.3
13
94
0
51
70
0
23
6
1.11
67154036--67154073
19
2.0
19
100
0
76
36
0
26
36
1.57
67159491--67159554
29
2.2
30
83
5
78
28
9
18
43
1.81
67164118--67164143
2
13.0
2
100
0
52
50
0
0
50
1.00
67165420--67165456
5
7.4
5
96
0
65
24
0
75
0
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67165618--67165652
3
11.7
3
100
0
70
31
0
0
68
0.90
67171743--67171797
27
2.0
27
100
0
110
36
10
14
38
1.81
67177292--67177442
53
2.8
53
89
4
214
29
27
16
25
1.97
67184806--67184956
53
2.8
53
89
4
214
29
27
16
25
1.97
67186856--67186889
14
2.4
14
90
0
50
17
5
11
64
1.45
67186914--67186976
30
2.1
30
90
0
99
25
4
14
55
1.58
67192996--67193093
24
4.1
24
89
2
135
11
35
15
37
1.83
67193008--67193071
12
5.3
12
71
0
56
9
35
17
37
1.82
67196864--67196907
17
2.4
18
85
11
54
34
0
2
63
1.07
67196856--67196912
28
2.1
27
87
9
80
33
0
3
63
1.12
67198370--67198459
31
2.9
32
86
5
130
27
0
15
56
1.40
67198466--67198510
11
4.3
10
78
10
54
62
0
2
35
1.08
67200570--67200595
2
13.0
2
100
0
52
50
0
0
50
1.00
67201943--67202017
9
8.2
9
75
14
57
28
4
1
66
1.17
67202033--67202080
20
2.4
20
86
13
64
31
6
0
62
1.20
67202103--67202140
17
2.2
17
86
9
51
31
2
0
65
1.06
67202106--67202140
19
1.9
19
88
11
56
31
2
0
65
1.07
67204366--67204400
3
11.7
3
100
0
70
31
0
0
68
0.90
67207681--67207732
26
2.0
26
100
0
104
42
11
7
38
1.70
67213842--67213886
23
2.0
23
86
8
65
53
2
2
42
1.25
67214592--67214637
22
2.1
22
100
0
92
32
4
21
41
1.73
67215147--67215200
27
2.0
28
82
13
69
33
9
5
51
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67215859--67215893
12
2.9
12
95
0
61
65
0
2
31
1.07
67216431--67216468
18
2.1
18
90
9
60
39
13
0
47
1.42
67217670--67217849
89
2.0
89
89
0
270
41
18
13
26
1.87
67224702--67224913
47
4.6
45
75
10
169
22
27
19
30
1.98
67224788--67224957
94
1.8
92
80
9
202
21
28
21
28
1.98
67229103--67229153
22
2.3
22
100
0
102
21
21
29
27
1.99
67231011--67231205
51
3.9
50
82
2
185
25
17
26
30
1.97
67236725--67236853
44
2.8
45
82
4
152
34
13
24
27
1.93
67240424--67240595
93
1.8
93
96
0
317
27
30
22
20
1.98
67240416--67240591
46
3.8
46
81
10
232
28
29
21
20
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292