genome.fa.s9.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  98  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30039689--30039838	67	2.2	67	81	8	171	32	17	28	21	1.96
30039713--30039896	67	2.8	64	77	8	194	29	17	29	22	1.97
30040282--30040345	27	2.3	27	86	5	83	50	7	14	28	1.70
30040298--30040354	27	2.1	27	96	0	105	47	8	12	31	1.72
30050388--30050416	2	14.5	2	100	0	58	48	0	0	51	1.00
30050660--30050792	40	3.4	38	81	9	144	25	26	21	26	2.00
30050684--30050793	37	2.9	37	87	4	148	24	26	20	28	1.99
30058434--30058641	40	5.2	40	84	0	218	25	22	25	25	2.00
30058435--30058641	80	2.6	80	83	4	247	25	22	26	25	2.00
30061711--30061895	79	2.3	81	83	7	227	23	27	24	24	2.00
30061704--30061895	40	4.8	39	76	8	163	23	28	23	24	2.00
30069743--30069927	79	2.3	81	83	7	227	23	27	24	24	2.00
30069736--30069927	40	4.8	39	76	8	163	23	28	23	24	2.00
30077696--30077886	40	4.8	39	80	4	170	23	28	23	24	2.00
30077703--30077886	79	2.3	81	83	6	216	23	27	23	24	2.00
30091694--30091878	79	2.3	81	83	7	227	23	27	24	24	2.00
30091687--30091878	40	4.8	39	76	8	163	23	28	23	24	2.00
30104786--30104901	43	2.7	41	75	7	108	31	10	24	33	1.89
30106085--30106156	20	3.6	20	98	0	135	19	34	31	13	1.91
30113274--30113444	93	1.8	93	93	0	297	27	29	21	21	1.99
30113266--30113441	46	3.8	46	80	10	205	28	28	21	21	1.98
30115073--30115185	43	2.7	42	79	2	118	28	16	24	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30121161--30121267	40	2.7	40	82	0	124	28	22	25	23	1.99
30121199--30121327	40	3.3	39	82	5	154	23	24	27	24	2.00
30128823--30128951	40	3.2	40	83	6	165	24	28	24	22	1.99
30128839--30128948	39	2.8	40	87	8	154	21	29	26	22	1.99
30132413--30132539	40	3.2	39	83	8	141	22	25	29	22	1.99
30136043--30136222	40	4.5	39	77	10	161	27	22	26	23	1.99
30144073--30144175	41	2.5	41	82	4	120	30	22	25	22	1.99
30144071--30144242	40	4.3	40	77	10	156	27	21	26	23	1.99
30148956--30149011	27	2.0	27	86	3	76	39	17	8	33	1.81
30148965--30149064	27	3.7	28	78	9	100	40	21	9	30	1.84
30149067--30149459	27	14.6	27	87	0	453	27	22	8	41	1.82
30149330--30149603	27	10.1	27	79	7	108	35	18	8	36	1.82
30149060--30149458	81	4.9	81	89	3	545	27	23	8	41	1.82
30149560--30149611	27	1.9	27	88	7	79	40	11	11	36	1.78
30149665--30149725	27	2.3	27	82	5	79	36	19	24	19	1.95
30150974--30151048	9	7.7	9	72	16	60	36	9	20	34	1.84
30150983--30151041	11	5.7	11	73	15	63	35	11	20	32	1.89
30150972--30151054	20	4.2	20	95	0	148	36	13	19	31	1.90
30151108--30151248	24	5.9	24	95	0	248	29	23	21	26	1.99
30151393--30151484	42	2.2	42	86	3	123	27	10	21	40	1.87
30155318--30155511	27	7.2	27	85	2	219	30	24	5	39	1.78
30155332--30155515	54	3.4	53	87	4	253	31	23	5	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30155547--30155711	54	3.0	55	77	4	165	42	20	7	29	1.80
30155547--30155673	27	4.7	27	84	3	157	40	21	9	29	1.84
30155663--30155725	29	2.2	28	83	10	76	49	19	3	28	1.63
30156688--30156757	25	2.8	25	91	0	104	25	25	22	25	2.00
30156688--30156770	25	3.4	24	85	8	96	28	22	22	25	1.99
30159881--30159920	2	20.0	2	100	0	80	50	0	0	50	1.00
30160041--30160131	32	2.8	32	76	12	87	29	6	25	38	1.81
30160140--30160170	2	15.5	2	93	0	53	48	3	0	48	1.17
30160284--30160378	27	3.6	26	72	5	84	28	14	26	30	1.95
30167810--30167874	26	2.5	26	87	7	89	40	18	18	23	1.92
30167936--30168057	65	1.9	65	89	0	190	35	22	18	23	1.96
30178323--30178488	40	4.2	40	82	4	201	25	20	29	24	1.99
30178352--30178447	39	2.4	39	87	1	129	27	22	28	21	1.99
30178353--30178504	79	1.9	80	87	4	227	26	19	29	24	1.98
30178340--30178518	40	4.5	40	79	7	166	25	22	29	22	1.99
30180168--30180219	21	2.3	23	78	15	56	59	5	11	23	1.53
30182163--30182237	37	2.0	37	100	0	150	34	16	13	36	1.87
30183034--30183201	40	4.2	40	81	4	178	26	27	20	25	1.99
30193071--30193173	40	2.6	40	92	0	161	23	14	27	34	1.94
30196227--30196356	40	3.3	39	83	4	163	23	28	25	23	1.99
30204368--30204497	40	3.3	39	83	4	163	23	28	25	23	1.99
30207057--30207180	43	2.9	43	84	4	135	33	24	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30212614--30212711	42	2.3	42	85	1	133	32	22	18	26	1.97
30212614--30212764	43	3.5	43	76	10	139	32	25	17	25	1.97
30223855--30224213	27	13.4	27	80	6	345	19	18	20	40	1.91
30223897--30224234	80	4.2	81	85	4	398	18	18	22	40	1.92
30227635--30227776	37	3.8	37	92	0	203	25	32	18	23	1.97
30228180--30228258	37	2.1	37	95	0	140	25	31	20	22	1.98
30228465--30228658	47	4.1	47	90	0	262	26	28	10	33	1.90
30228511--30228629	23	5.1	22	62	28	59	24	30	13	31	1.93
30232348--30232519	43	4.0	43	71	12	147	31	25	16	26	1.96
30233845--30233876	12	2.7	12	100	0	64	25	31	6	37	1.81
30237847--30237892	9	4.7	10	82	10	51	34	8	19	36	1.83
30237947--30238030	25	3.4	25	80	6	73	30	23	21	23	1.99
30237947--30238031	26	3.4	25	82	4	82	30	23	21	24	1.99
30239408--30239534	28	4.5	28	83	6	132	25	14	26	32	1.95
30242513--30242656	46	3.1	45	73	21	120	29	28	20	22	1.98
30251699--30251752	25	2.2	25	83	3	65	24	25	27	22	2.00
30251705--30251789	25	3.4	26	79	6	86	22	24	23	29	1.99
30252010--30252096	38	2.6	31	76	22	102	35	18	24	21	1.95
30253977--30254192	47	4.6	47	95	0	378	36	13	24	25	1.92
30254165--30254367	54	3.8	54	77	4	194	36	16	23	22	1.94
30254171--30254377	53	3.8	54	78	4	193	36	16	24	23	1.94
30257750--30257879	40	3.3	39	76	8	136	23	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30257766--30257917	40	3.8	40	78	6	148	22	26	23	27	1.99
30257766--30257915	80	1.9	80	83	8	198	22	26	24	27	1.99
30265790--30265896	40	2.7	40	98	0	205	21	28	25	24	1.99
30269943--30269967	12	2.1	12	100	0	50	44	0	8	48	1.32
30271839--30271868	2	15.0	2	100	0	60	50	0	0	50	1.00
30277132--30277159	2	14.0	2	100	0	56	50	0	0	50	1.00
30282299--30282351	26	2.0	26	96	0	97	47	20	9	22	1.79
30292503--30292710	40	5.2	40	84	0	218	25	22	25	25	2.00
30292504--30292710	80	2.6	80	83	4	247	25	22	26	25	2.00
30300530--30300737	40	5.2	40	85	0	227	26	22	25	25	2.00
30300532--30300737	80	2.6	80	85	1	252	26	22	26	25	2.00
30303558--30303681	43	2.9	44	78	4	146	29	17	23	29	1.97
30305290--30305428	40	3.4	40	84	4	172	24	16	25	33	1.96
30305576--30305604	8	3.6	8	100	0	58	37	0	24	37	1.56
30306505--30306574	25	2.8	25	97	0	131	24	22	27	25	2.00
30306779--30306949	27	6.3	27	88	0	225	27	19	16	35	1.94
30306965--30307354	27	14.4	27	80	4	356	31	9	19	40	1.84
30306932--30307354	54	7.8	54	82	5	394	30	10	19	39	1.85
30309142--30309271	40	3.2	40	81	2	163	23	27	23	24	2.00
30309142--30309308	40	4.2	40	77	6	142	22	26	23	26	2.00
30309142--30309308	80	2.1	79	82	7	196	22	26	23	26	2.00
30312446--30312528	29	2.8	30	80	14	100	25	25	19	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30312749--30312818	25	2.8	25	91	4	106	28	21	22	27	1.99
30312980--30313043	27	2.4	27	81	7	67	40	23	17	18	1.91
30313024--30313191	27	6.2	27	88	0	228	27	20	17	34	1.95
30313176--30313327	27	5.6	27	75	12	98	31	9	21	37	1.85
30313175--30313302	54	2.4	55	73	13	122	30	8	23	37	1.85
30313230--30313623	27	14.6	27	79	7	302	31	9	20	38	1.85
30313230--30313623	54	7.3	53	79	8	336	31	9	20	38	1.85
30313230--30313623	81	4.9	79	78	7	373	31	9	20	38	1.85
30315504--30315586	29	2.8	30	80	14	100	25	25	20	28	1.99
30315807--30315876	25	2.8	25	93	0	113	27	22	24	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292