genome.fa.s9.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  161  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48012533--48012714	40	4.6	40	82	4	181	28	22	26	23	1.99
48014259--48014446	48	3.9	48	94	0	313	26	21	25	27	1.99
48014266--48014537	96	2.9	96	82	3	304	27	20	25	26	1.99
48018391--48018496	26	4.2	26	84	3	128	25	19	23	31	1.98
48018391--48018496	52	2.1	49	89	5	158	25	19	23	31	1.98
48018546--48018602	20	2.9	21	85	10	68	31	17	8	42	1.80
48018552--48018602	18	2.7	19	80	16	61	31	17	7	43	1.78
48019971--48020002	15	2.0	17	88	11	50	75	0	25	0	0.81
48026635--48026706	26	2.8	26	95	2	128	23	23	25	27	2.00
48026756--48026812	20	2.9	21	87	10	77	31	19	8	40	1.82
48026838--48026885	25	1.9	25	86	0	69	27	14	22	35	1.93
48028195--48028226	15	2.0	17	88	11	50	75	0	25	0	0.81
48029291--48029403	54	2.1	53	80	9	122	26	23	30	20	1.98
48029653--48029696	17	2.6	17	78	3	54	54	13	11	20	1.69
48029692--48029731	16	2.5	16	83	0	53	45	2	22	30	1.66
48041968--48042019	27	1.9	27	96	0	95	32	15	19	32	1.93
48045163--48045207	22	2.0	22	91	8	74	28	0	20	51	1.48
48046537--48046574	17	2.3	17	83	16	53	5	7	2	84	0.86
48046773--48046877	50	2.1	50	98	0	201	49	15	14	20	1.79
48054993--48055077	42	2.0	42	100	0	170	38	18	11	30	1.87
48056949--48057162	40	5.4	40	86	5	247	25	23	25	25	2.00
48065396--48065526	30	4.5	30	86	8	171	32	13	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48065396--48065526	58	2.2	58	86	4	174	32	13	25	28	1.94
48073348--48073478	30	4.5	30	86	8	171	32	13	25	28	1.94
48073348--48073478	58	2.2	58	86	4	174	32	13	25	28	1.94
48075432--48075457	2	13.0	2	100	0	52	50	0	0	50	1.00
48076167--48076381	40	5.3	40	85	2	252	26	23	25	25	2.00
48087341--48087747	49	8.5	49	94	4	731	33	7	28	30	1.85
48087341--48087747	142	2.8	144	95	3	730	33	7	28	30	1.85
48087341--48087764	95	4.4	97	93	4	713	33	8	28	29	1.86
48087743--48087917	48	3.7	48	86	3	246	36	6	26	31	1.81
48088737--48088774	17	2.3	17	83	16	53	5	7	2	84	0.86
48088973--48089077	50	2.1	50	98	0	201	49	15	14	20	1.79
48089192--48089238	13	3.6	13	80	8	51	70	2	2	25	1.10
48106974--48107450	49	9.9	49	95	2	851	33	8	28	29	1.86
48106974--48107450	192	2.5	192	94	2	839	33	8	28	29	1.86
48107428--48107603	48	3.7	48	87	3	255	35	6	26	31	1.81
48107637--48107734	37	2.6	37	95	0	178	24	15	32	27	1.95
48117189--48117239	26	2.0	26	96	0	93	19	23	7	49	1.74
48118904--48118937	10	3.3	10	92	8	59	79	0	2	17	0.86
48120354--48120517	71	2.3	71	97	0	310	18	28	18	34	1.95
48120354--48120551	71	2.8	70	90	3	249	20	28	17	32	1.96
48127496--48127646	40	3.8	40	77	13	134	27	23	26	22	2.00
48127533--48127662	40	3.2	40	77	4	138	24	23	27	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48135492--48135642	40	3.8	40	77	13	134	27	23	26	22	2.00
48135529--48135658	40	3.2	40	77	4	138	24	23	27	23	2.00
48142505--48142697	47	4.1	47	87	2	255	32	9	30	27	1.89
48142534--48142605	22	3.1	22	64	24	58	33	13	29	23	1.93
48142505--48142883	96	4.0	93	83	6	261	34	8	28	29	1.86
48142579--48142654	23	3.2	25	62	24	63	28	13	34	23	1.92
48142656--48142899	48	5.0	48	89	4	391	35	6	27	31	1.81
48142574--48142899	96	3.4	96	86	6	398	34	7	28	30	1.85
48142656--48142937	146	2.0	143	83	6	365	33	7	28	30	1.85
48143045--48143224	37	4.9	37	95	0	306	24	19	30	25	1.98
48144239--48144547	79	3.9	80	90	2	471	24	21	28	25	1.99
48144239--48144547	40	7.8	40	91	2	471	24	21	28	25	1.99
48148632--48148824	47	4.1	47	87	2	246	32	9	30	27	1.88
48148632--48149010	96	4.0	93	83	6	252	33	8	28	29	1.86
48148661--48148732	22	3.1	22	64	24	58	33	13	29	23	1.93
48148706--48148781	23	3.2	25	62	24	63	28	13	34	23	1.92
48148783--48149026	48	5.0	48	89	4	382	34	6	27	31	1.81
48149174--48149314	37	3.8	37	95	0	246	24	19	31	24	1.98
48155363--48155472	40	2.8	40	87	4	143	23	28	24	23	2.00
48155347--48155513	40	4.2	39	80	6	124	23	26	23	26	2.00
48159686--48159861	68	2.6	68	77	12	166	22	27	15	34	1.94
48171215--48171309	47	2.0	47	95	0	172	50	15	26	7	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48171835--48171872	14	2.9	13	81	11	51	18	13	10	57	1.63
48177275--48177404	40	3.3	39	81	10	156	23	26	23	25	2.00
48177273--48177457	79	2.3	81	82	9	220	24	27	23	24	2.00
48177273--48177457	40	4.6	38	75	10	120	24	27	23	24	2.00
48195460--48195510	25	2.0	25	100	0	102	39	15	11	33	1.84
48195505--48195542	18	2.1	18	100	0	76	31	15	10	42	1.81
48195855--48195881	13	2.1	13	100	0	54	37	0	14	48	1.45
48196069--48196131	24	2.6	24	92	0	99	34	3	6	55	1.41
48196720--48196753	7	4.7	7	85	7	50	29	14	0	55	1.40
48198055--48198128	26	2.7	26	83	6	94	17	24	0	58	1.39
48198065--48198123	26	2.2	27	93	3	102	16	27	0	55	1.41
48199368--48199542	89	2.0	89	93	2	298	23	19	23	33	1.97
48199552--48199630	41	1.9	41	87	5	115	27	21	20	30	1.98
48201798--48201850	26	2.0	26	100	0	106	22	28	11	37	1.89
48211407--48211646	132	1.8	132	86	0	345	36	19	17	26	1.94
48211952--48211994	3	14.0	3	95	4	77	65	0	0	34	0.93
48212628--48212679	3	17.3	3	100	0	104	67	0	0	32	0.91
48213601--48213663	26	2.4	27	94	5	119	17	25	0	57	1.40
48215012--48215069	29	2.0	29	89	3	89	27	3	5	63	1.31
48215893--48215950	30	1.9	30	85	3	80	13	3	22	60	1.49
48221760--48222224	55	8.7	54	73	11	343	24	24	16	34	1.95
48221939--48222213	108	2.5	108	89	1	408	23	23	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48222210--48222372	47	3.5	47	97	0	299	27	24	12	35	1.91
48222476--48222559	44	1.9	44	85	4	116	25	23	11	39	1.89
48227132--48227299	40	4.2	40	93	2	277	23	22	27	26	2.00
48229361--48229440	41	2.0	41	92	0	133	36	23	12	27	1.91
48232235--48232290	28	2.0	28	82	3	67	41	14	14	30	1.85
48234233--48234451	40	5.5	39	84	5	226	24	26	23	25	2.00
48234233--48234453	80	2.7	79	83	2	271	24	26	23	25	2.00
48239183--48239214	15	2.1	15	100	0	64	34	31	18	15	1.93
48242292--48242505	40	5.5	40	82	11	214	24	26	22	25	2.00
48242318--48242503	74	2.4	78	83	7	227	24	27	22	25	2.00
48244155--48244195	20	2.0	20	100	0	82	21	39	19	19	1.93
48246264--48246478	40	5.4	40	84	5	240	24	26	23	25	2.00
48254357--48254575	40	5.5	39	81	8	208	25	26	22	26	2.00
48254357--48254577	80	2.8	80	83	2	255	25	25	22	26	2.00
48254357--48254574	120	1.8	121	85	5	307	25	26	22	26	2.00
48261718--48261879	43	3.8	42	77	6	146	33	27	15	23	1.95
48267495--48267524	12	2.5	12	88	0	51	30	0	50	20	1.49
48269089--48269131	22	1.9	23	95	4	79	23	0	53	23	1.46
48275098--48275127	12	2.5	12	88	0	51	30	0	50	20	1.49
48277473--48277627	40	3.8	40	83	5	179	25	20	27	27	1.99
48277476--48277627	80	1.9	81	83	4	200	25	20	27	26	1.99
48279808--48279836	12	2.4	12	100	0	58	24	17	27	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48292825--48292855	16	1.9	16	100	0	62	6	9	12	70	1.31
48298569--48298757	39	4.8	39	76	10	136	24	20	29	26	1.99
48298569--48298734	39	4.2	40	77	8	162	24	21	28	25	1.99
48304623--48304681	31	1.9	31	86	3	84	25	25	15	33	1.95
48304876--48305018	24	6.0	24	91	4	209	26	22	22	28	1.99
48304876--48305017	47	3.0	48	90	5	207	26	22	22	28	1.99
48304875--48305018	71	2.0	72	89	4	220	26	22	22	29	1.99
48305068--48305128	20	3.0	20	92	0	104	32	21	11	34	1.89
48305171--48305218	25	1.9	25	86	0	69	25	16	25	33	1.96
48307982--48308007	5	5.2	5	100	0	52	23	19	19	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292