genome.fa.s9.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  154  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45800604--45800801	51	3.9	51	84	4	256	34	13	23	29	1.92
45800604--45800798	102	1.9	102	88	4	295	34	12	23	29	1.91
45803293--45803439	42	3.3	43	79	12	145	33	23	17	26	1.96
45803939--45803978	21	2.0	20	85	5	53	47	25	2	25	1.64
45806033--45806060	6	4.7	6	100	0	56	17	14	17	50	1.79
45816018--45816132	29	4.1	27	78	9	104	28	26	14	29	1.95
45824960--45825011	18	2.7	20	85	8	72	17	26	36	19	1.94
45827047--45827111	29	2.2	29	86	5	87	46	16	3	33	1.63
45827008--45827112	31	3.4	30	73	15	90	44	17	5	32	1.72
45829799--45829837	2	19.5	2	100	0	78	51	0	0	48	1.00
45831082--45831112	2	15.5	2	100	0	62	51	0	0	48	1.00
45832424--45832456	16	1.9	18	88	11	52	51	18	12	18	1.76
45833018--45833145	43	3.0	43	86	7	170	25	28	21	23	1.99
45835531--45835558	14	2.0	14	100	0	56	50	21	0	28	1.49
45840748--45840790	2	21.5	2	95	0	77	53	0	0	46	1.00
45840923--45840950	2	14.0	2	100	0	56	50	0	0	50	1.00
45841335--45841374	2	20.0	2	94	0	71	47	0	0	52	1.00
45842351--45842507	41	3.7	42	72	14	142	28	27	19	25	1.98
45842351--45842520	45	3.9	45	75	9	138	30	27	18	24	1.98
45843654--45843682	14	2.0	15	93	6	51	51	20	0	27	1.47
45844300--45844328	13	2.2	13	100	0	58	41	20	0	37	1.53
45848605--45848655	25	2.0	25	84	0	66	25	19	23	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45848769--45848800	2	16.0	2	100	0	64	50	0	0	50	1.00
45850580--45850798	47	4.7	48	78	14	203	29	28	21	21	1.98
45850630--45850749	47	2.6	47	95	0	222	29	29	19	22	1.98
45876257--45876294	17	2.2	17	100	0	76	26	18	21	34	1.96
45879676--45879843	40	4.2	40	82	1	185	24	26	22	26	2.00
45887678--45887844	40	4.2	40	82	2	185	24	26	22	26	2.00
45893911--45893970	3	20.3	3	93	3	104	66	0	0	33	0.92
45895621--45895708	45	2.0	45	90	0	140	22	11	26	39	1.88
45901201--45901232	2	16.0	2	100	0	64	50	50	0	0	1.00
45906401--45906487	24	3.6	24	96	0	165	21	17	25	35	1.95
45906401--45906509	48	2.3	48	91	3	175	24	17	23	33	1.96
45906401--45906514	24	4.8	24	89	3	122	26	17	22	33	1.96
45920791--45920831	21	1.9	22	95	5	75	31	21	14	31	1.94
45921405--45921450	22	2.1	22	100	0	92	34	13	23	28	1.92
45924201--45924240	20	2.0	20	100	0	80	20	30	20	30	1.97
45925125--45925223	25	4.0	25	77	7	85	36	17	22	24	1.95
45925112--45925209	50	1.9	51	83	2	126	31	17	24	26	1.97
45925126--45925234	50	2.2	50	78	3	112	37	17	22	22	1.94
45925353--45925420	26	2.6	26	76	4	66	38	20	19	22	1.94
45925865--45925906	21	2.0	21	90	0	66	40	16	0	42	1.48
45925865--45925903	5	7.6	5	82	5	51	41	17	0	41	1.50
45927392--45927429	17	2.2	18	90	4	60	55	0	2	42	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45928476--45928515	20	2.0	20	100	0	80	50	10	25	15	1.74
45930529--45930859	47	7.3	47	86	7	441	27	27	8	36	1.85
45930664--45930736	36	2.0	36	100	0	146	27	26	5	41	1.77
45930576--45930830	130	2.0	130	94	0	447	27	27	7	37	1.84
45930529--45930864	177	1.9	177	89	0	528	27	27	8	36	1.85
45935770--45935936	40	4.2	40	78	2	158	24	26	22	26	2.00
45935786--45935936	80	1.9	79	85	6	207	23	26	22	27	2.00
45942798--45942964	40	4.2	40	81	2	176	24	27	22	25	2.00
45942814--45942964	80	1.9	79	83	6	198	23	27	22	25	2.00
45951879--45952278	50	8.0	50	90	3	563	26	11	22	39	1.87
45951879--45952247	153	2.4	153	90	2	559	26	10	22	40	1.86
45951895--45952261	203	1.8	203	90	2	594	26	10	22	40	1.86
45958336--45958383	10	4.6	10	85	10	51	62	4	0	33	1.14
45961738--45961896	77	2.1	77	84	2	203	20	20	37	21	1.94
45967778--45967930	40	3.8	39	79	5	128	26	28	22	22	1.99
45978517--45978636	43	2.8	42	82	12	154	29	29	17	24	1.97
45982575--45982701	67	1.9	67	96	0	236	39	11	5	43	1.65
45986066--45986136	37	1.9	37	100	0	142	38	9	4	47	1.56
45986416--45986467	18	2.8	18	85	8	61	50	0	1	48	1.12
45986495--45986550	19	2.7	21	83	8	62	48	10	0	41	1.38
45986495--45986551	21	2.8	20	82	10	62	49	10	0	40	1.37
45989774--45989803	3	10.0	3	100	0	60	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45995552--45995602	22	2.4	21	80	3	57	45	0	11	43	1.40
45995566--45995606	21	1.9	22	90	5	66	48	0	7	43	1.30
45997019--45997061	17	2.5	17	80	0	50	65	0	0	34	0.93
45997031--45997063	17	1.9	17	93	0	57	63	0	0	36	0.95
46000377--46000408	2	17.0	2	87	12	50	50	0	0	50	1.00
46000570--46000615	23	2.0	23	84	12	60	45	10	6	36	1.65
46000577--46000621	23	2.0	23	82	8	56	40	13	8	37	1.76
46003745--46003779	2	17.5	2	93	0	61	45	0	2	51	1.16
46003749--46003787	12	3.2	12	92	0	60	41	0	7	51	1.31
46005474--46005523	25	2.0	24	92	3	82	42	4	0	54	1.19
46005490--46005531	20	2.1	20	82	8	50	40	2	0	57	1.12
46012900--46012948	20	2.5	20	86	0	71	51	0	4	44	1.20
46013036--46013075	20	2.0	20	90	0	62	42	12	10	35	1.76
46025893--46025956	22	2.8	23	81	9	69	67	25	0	7	1.17
46033859--46033924	22	3.0	21	82	10	69	18	27	19	34	1.95
46041542--46041593	23	2.3	21	84	12	68	19	25	19	36	1.95
46045753--46045835	39	2.1	41	81	4	98	26	15	25	32	1.96
46047077--46047128	26	2.0	26	100	0	104	26	7	19	46	1.77
46054786--46054835	2	25.5	2	89	4	75	54	2	0	44	1.11
46054884--46054946	32	2.1	29	82	8	72	61	1	4	31	1.26
46067076--46067148	30	2.4	30	79	6	76	50	0	1	47	1.09
46067425--46067502	33	2.4	33	93	0	129	44	17	10	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46070319--46070368	25	2.0	26	84	4	66	64	12	12	12	1.51
46077327--46077384	27	2.2	25	82	14	64	56	1	0	41	1.09
46079734--46079779	23	2.0	23	83	8	58	34	6	6	52	1.53
46080596--46080847	129	2.0	129	84	3	337	26	18	20	34	1.95
46100824--46100854	6	5.0	6	92	7	53	83	0	0	16	0.64
46100824--46100853	13	2.3	13	100	0	60	86	0	0	13	0.57
46108424--46108483	28	2.1	28	81	6	68	23	20	26	30	1.98
46108522--46108575	21	2.6	20	82	5	63	40	16	18	24	1.90
46113548--46113651	27	3.8	26	86	7	118	39	24	22	14	1.91
46114895--46114921	12	2.2	12	100	0	54	85	0	14	0	0.61
46114917--46114969	27	2.0	27	100	0	106	50	3	33	11	1.56
46121405--46121516	27	4.1	27	80	7	113	37	22	24	16	1.93
46121405--46121516	54	2.1	54	86	3	154	37	22	24	16	1.93
46123747--46123817	29	2.4	29	97	0	133	21	18	25	35	1.95
46123824--46123955	65	2.0	65	85	2	176	17	14	31	36	1.90
46128115--46128141	2	13.5	2	100	0	54	48	0	0	51	1.00
46138670--46138728	30	1.9	31	86	3	84	22	38	0	38	1.54
46138706--46138942	124	1.9	127	84	8	324	23	45	0	30	1.56
46139481--46139549	30	2.3	30	94	0	120	24	26	14	34	1.94
46139681--46139714	18	1.9	18	88	5	52	52	2	0	44	1.16
46141255--46141341	38	2.3	38	100	0	174	28	16	17	37	1.91
46143261--46143336	39	2.0	38	82	7	91	38	9	1	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46144173--46144204	15	2.1	15	100	0	64	40	6	25	28	1.79
46146738--46146832	41	2.3	40	80	5	100	65	7	2	25	1.30
46146815--46146883	28	2.5	27	79	6	75	62	0	7	30	1.22
46158058--46158098	18	2.3	18	91	0	64	65	9	4	19	1.40
46159990--46160024	17	2.0	18	88	5	54	37	5	14	42	1.69
46160500--46160559	27	2.3	26	82	2	66	35	20	21	23	1.96
46168381--46168523	74	1.9	74	82	2	180	26	23	20	28	1.99
46168515--46168591	34	2.2	34	77	6	84	22	20	20	36	1.95
46172129--46172317	29	6.5	29	85	3	238	26	16	30	25	1.97
46176349--46176377	13	2.1	14	93	6	51	75	0	24	0	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292