genome.fa.s7.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  100  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30824054--30824170	56	2.1	56	100	0	234	50	21	6	21	1.71
30826309--30826340	17	2.0	17	88	11	50	50	3	9	37	1.51
30831460--30831493	14	2.3	15	90	5	52	17	5	5	70	1.28
30833037--30833093	5	10.6	5	80	14	53	24	0	1	73	0.92
30833037--30833093	12	5.3	10	75	20	53	24	0	1	73	0.92
30835380--30835609	115	2.0	115	98	0	442	30	11	13	44	1.79
30836242--30836280	13	2.9	13	88	11	53	38	0	0	61	0.96
30836827--30836906	30	2.7	29	73	21	83	38	2	5	53	1.36
30837954--30838048	49	1.9	49	89	0	145	52	12	12	22	1.72
30847979--30848028	15	3.3	15	80	0	64	54	14	32	0	1.40
30847979--30848112	30	4.4	30	79	10	146	55	13	29	0	1.43
30847994--30848109	15	7.5	15	73	9	90	57	13	27	0	1.42
30847994--30848131	63	2.2	63	84	2	179	57	11	30	0	1.39
30850089--30850144	27	2.2	25	78	12	62	55	0	1	42	1.10
30851866--30851917	27	2.0	25	82	14	61	28	9	3	57	1.48
30856964--30856990	10	2.7	10	100	0	54	59	11	0	29	1.32
30861902--30861957	21	2.7	21	89	8	80	71	1	0	26	0.96
30863530--30863584	15	3.8	15	73	7	51	56	3	5	34	1.40
30865239--30865310	31	2.3	31	80	0	81	25	11	18	45	1.81
30865886--30865925	20	2.0	20	95	0	71	40	2	10	47	1.50
30876392--30876446	27	2.0	27	100	0	110	14	29	10	45	1.79
30876394--30876453	27	2.2	27	93	0	102	13	30	8	48	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30886006--30886064	28	2.1	28	84	6	75	50	8	10	30	1.66
30888146--30888225	40	2.0	40	100	0	160	35	15	10	40	1.80
30894669--30894723	28	2.0	28	82	7	67	60	16	1	21	1.45
30895304--30895476	90	1.9	90	91	2	285	38	17	20	24	1.93
30895304--30895506	45	4.5	45	83	2	255	39	17	19	23	1.92
30895308--30895506	90	2.2	90	87	1	283	40	17	19	23	1.91
30895488--30895607	45	2.7	45	81	0	132	45	18	17	19	1.86
30902623--30902673	21	2.7	18	88	11	68	27	0	0	72	0.85
30902750--30902805	19	2.8	20	91	5	87	67	1	1	28	1.10
30902868--30903294	141	3.1	138	83	7	515	49	11	14	24	1.75
30902889--30903293	143	2.9	140	84	6	500	50	10	13	24	1.74
30908220--30908254	3	11.7	3	100	0	70	31	0	0	68	0.90
30912996--30913347	47	7.5	48	72	16	231	26	20	29	23	1.99
30912995--30913157	46	3.5	46	83	11	215	25	22	30	21	1.98
30921870--30921949	40	2.0	40	92	0	133	43	25	18	12	1.85
30922036--30922077	5	8.4	5	79	10	50	76	0	4	19	0.96
30934750--30934782	14	2.4	14	100	0	66	12	36	30	21	1.90
30935354--30935405	5	10.4	5	79	8	61	73	1	1	23	1.04
30942119--30942155	19	1.9	19	88	0	56	29	16	21	32	1.95
30942365--30942464	39	2.6	38	80	10	114	48	9	6	37	1.60
30943036--30943081	23	2.0	23	95	0	83	50	4	17	28	1.65
30945734--30945844	42	2.6	42	84	8	136	35	27	14	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30945709--30945851	43	3.3	43	78	7	157	33	25	13	26	1.94
30947671--30947738	33	2.1	33	97	0	127	25	26	20	27	1.99
30953872--30954041	43	4.0	44	76	3	159	28	12	23	34	1.92
30966436--30966602	43	3.9	43	74	9	162	34	23	14	27	1.93
30972213--30972703	131	3.8	132	83	5	498	34	18	18	28	1.95
30974834--30974867	18	1.9	17	88	5	50	67	5	8	17	1.37
30978044--30978131	44	2.0	44	95	0	158	35	11	18	35	1.86
30981133--30981289	33	4.8	33	73	8	113	20	19	14	45	1.85
30981151--30981289	66	2.1	66	80	7	158	20	17	13	47	1.82
30983871--30983909	10	3.9	10	93	0	69	17	12	0	69	1.19
30987490--30987541	14	3.6	14	75	25	54	55	0	3	40	1.18
30993855--30993934	33	2.4	33	81	8	92	30	13	40	16	1.87
30995991--30996022	16	2.1	16	94	5	57	56	6	0	37	1.25
30996134--30996496	114	3.2	114	92	3	588	50	15	0	32	1.50
30996108--30996545	114	3.9	111	86	9	436	51	15	1	31	1.51
30996695--30996732	3	12.3	3	88	5	58	0	36	0	63	0.95
30996697--30996736	19	2.2	18	90	4	62	0	40	0	60	0.97
31003993--31004021	6	4.8	6	100	0	58	13	0	0	86	0.58
31004152--31004243	20	4.6	20	71	20	68	64	3	1	31	1.17
31004152--31004200	19	2.4	21	86	6	66	63	4	0	32	1.13
31007782--31007816	16	2.2	16	100	0	70	60	0	5	34	1.21
31009153--31009199	24	2.0	24	86	0	67	38	4	0	57	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31011168--31011252	35	2.4	35	98	0	161	48	15	12	23	1.79
31014725--31014772	23	2.0	25	84	8	64	25	16	0	58	1.38
31015970--31016000	15	2.1	15	94	5	55	41	0	0	58	0.98
31015968--31016061	49	1.9	49	82	4	118	32	3	2	61	1.23
31016824--31016858	17	2.1	17	100	0	70	28	54	0	17	1.43
31016876--31016901	13	2.0	13	100	0	52	38	46	0	15	1.46
31017433--31017475	22	2.0	22	86	9	61	34	0	0	65	0.93
31023133--31023187	25	2.2	25	100	0	110	61	10	27	0	1.29
31024258--31024384	64	2.0	64	90	0	200	29	18	15	37	1.92
31024587--31025072	178	2.7	177	89	0	722	30	18	21	29	1.97
31024987--31025189	45	4.5	45	70	13	157	28	19	21	31	1.97
31024941--31025340	134	3.0	134	89	0	613	29	18	20	31	1.96
31025205--31025585	177	2.1	178	85	3	500	30	18	20	30	1.97
31026389--31026420	15	2.2	14	94	5	55	37	0	0	62	0.95
31026376--31026423	19	2.5	20	77	16	57	39	0	0	60	0.97
31027140--31027560	129	3.3	127	80	9	473	28	16	17	36	1.92
31027144--31027560	125	3.3	125	81	7	457	29	16	17	36	1.92
31028827--31028851	12	2.1	12	100	0	50	52	8	0	40	1.31
31028920--31028959	21	2.0	20	85	5	53	42	2	5	50	1.37
31035151--31035197	20	2.3	20	85	3	58	65	10	0	23	1.23
31044160--31044193	16	2.1	16	88	0	50	50	14	17	17	1.79
31046993--31047033	21	2.0	21	90	0	64	29	21	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31048938--31048971	16	2.1	16	88	0	50	50	14	17	17	1.79
31051852--31051884	14	2.4	14	90	5	50	39	0	0	60	0.97
31052880--31052919	20	2.0	20	100	0	80	35	5	30	30	1.79
31069557--31069596	21	2.0	21	90	5	64	10	35	27	27	1.89
31074356--31074544	50	3.8	49	85	1	234	25	18	26	29	1.98
31076818--31076852	18	1.9	18	88	0	52	42	20	8	28	1.81
31079789--31079849	29	2.1	29	90	3	97	26	14	31	27	1.95
31079801--31079935	28	4.7	29	77	9	100	26	11	34	27	1.91
31080991--31081025	18	2.0	18	88	5	54	37	20	14	28	1.91
31084507--31084674	47	3.6	46	80	9	155	27	17	29	25	1.98
31085558--31085588	13	2.4	13	100	0	62	6	22	25	45	1.76
31091680--31091942	93	2.8	93	92	2	438	29	28	19	22	1.98
31091726--31091893	47	3.6	47	74	18	170	29	28	18	23	1.98
31091671--31091939	46	5.8	46	75	16	259	30	28	18	22	1.98
31103223--31103273	22	2.3	22	87	12	70	54	0	5	39	1.24
31103423--31103480	30	2.0	30	82	3	73	44	12	8	34	1.72
31115149--31115183	16	2.1	17	89	5	54	45	0	11	42	1.40
31122018--31122042	9	2.8	9	100	0	50	24	16	48	12	1.79
31129700--31129964	40	6.6	39	80	6	228	23	27	16	32	1.96
31129824--31129888	20	3.2	20	63	8	51	23	29	13	33	1.93
31129707--31129936	120	1.9	120	83	3	302	22	28	16	32	1.96
31132282--31132315	16	2.2	16	89	5	52	50	14	8	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31134769--31134808	17	2.4	17	86	0	53	32	30	17	20	1.95
31141596--31141670	36	2.1	36	100	0	150	40	5	8	46	1.56
31147686--31147719	18	1.9	18	88	5	52	73	2	5	17	1.16
31149229--31149498	133	2.0	133	86	1	380	27	21	21	30	1.98
31149429--31149660	44	5.3	43	68	11	139	25	22	20	31	1.98
31149347--31150170	177	4.7	177	86	1	1010	27	22	19	30	1.98
31150250--31150298	23	2.1	23	81	11	55	44	14	14	26	1.83
31157377--31157410	18	1.9	18	88	5	52	73	2	5	17	1.16
31160226--31160288	31	2.0	31	90	0	99	28	12	11	47	1.76
31160605--31160652	23	2.1	22	88	3	69	18	2	6	72	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290