genome.fa.s7.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  142  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45145477--45145640	47	3.4	47	84	7	188	26	14	26	31	1.95
45145477--45145667	47	3.9	46	82	7	175	27	14	25	32	1.94
45153954--45154065	27	4.1	27	77	10	113	40	23	21	15	1.91
45161779--45161890	27	4.2	26	83	7	125	38	22	23	16	1.93
45163736--45163923	48	3.9	48	78	9	195	25	30	19	25	1.98
45163736--45163911	96	1.8	96	85	2	246	25	30	19	25	1.98
45167220--45167325	37	2.9	37	94	0	176	27	29	18	24	1.98
45167444--45167946	47	10.6	47	93	2	844	28	29	8	32	1.87
45167444--45167946	96	5.3	94	95	1	844	28	29	8	32	1.87
45167444--45167946	143	3.5	142	95	1	855	28	29	8	32	1.87
45180292--45180334	20	2.0	22	91	8	72	53	16	25	4	1.62
45183417--45183475	31	1.9	31	96	0	109	42	5	13	38	1.66
45192621--45192690	21	3.3	21	76	7	79	17	31	22	28	1.96
45194623--45194856	48	4.9	48	75	4	193	28	19	25	26	1.99
45194619--45194855	96	2.5	96	83	2	287	28	18	25	27	1.98
45207223--45207264	22	1.9	22	85	0	57	19	21	23	35	1.96
45207416--45207472	28	2.1	27	86	3	78	19	22	21	36	1.95
45211343--45211394	26	2.0	26	85	7	70	46	15	1	36	1.57
45219116--45219393	96	2.9	97	89	3	429	29	16	25	29	1.96
45219127--45219395	48	5.6	47	77	5	256	28	16	25	29	1.97
45229627--45229753	47	2.7	47	80	11	138	29	15	27	26	1.96
45229725--45229897	46	3.7	44	78	12	152	25	17	32	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45229813--45229944	49	2.7	49	81	9	144	26	21	29	22	1.99
45231025--45231070	21	2.2	21	96	0	83	15	30	28	26	1.96
45234978--45235147	43	4.0	43	85	1	225	22	31	20	25	1.98
45238379--45238428	26	1.9	26	84	15	68	40	18	10	32	1.83
45241655--45241823	43	3.9	43	86	4	234	23	31	20	24	1.98
45248111--45248222	46	2.5	44	79	16	122	25	17	28	27	1.98
45248067--45248334	49	5.7	46	71	16	151	26	18	29	25	1.98
45249384--45249424	21	2.0	21	85	0	55	21	34	14	29	1.93
45260836--45261118	47	5.9	47	91	1	422	33	8	29	29	1.86
45260844--45261118	96	2.9	94	90	3	415	33	8	29	29	1.86
45262499--45263001	40	12.6	40	89	0	709	25	20	27	27	1.99
45266683--45267380	49	14.6	49	95	3	1201	32	8	29	29	1.86
45266683--45267380	145	4.8	145	96	1	1271	32	8	29	29	1.86
45269554--45269724	93	1.8	93	94	0	306	27	29	21	21	1.98
45269546--45269721	46	3.8	46	81	10	214	28	29	21	21	1.98
45275643--45275690	15	3.2	15	80	11	62	58	14	14	12	1.64
45278647--45278817	46	3.7	45	78	12	195	28	29	19	22	1.98
45278652--45278821	92	1.8	93	93	1	297	28	30	20	21	1.98
45283705--45283750	23	2.0	23	82	0	56	23	0	28	47	1.52
45283865--45283892	9	3.1	9	100	0	56	42	10	10	35	1.74
45290493--45290520	14	2.0	14	100	0	56	35	0	14	50	1.43
45291562--45291755	53	3.6	54	81	6	232	22	25	17	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45291596--45291747	55	2.8	53	85	3	214	23	26	17	32	1.97
45291734--45291855	47	2.6	47	94	0	217	26	23	13	36	1.93
45291993--45292078	44	2.0	44	84	9	113	24	24	13	37	1.92
45292614--45292674	30	2.0	30	83	3	77	32	19	11	36	1.88
45297477--45297701	40	5.7	40	85	5	287	24	21	28	25	1.99
45297477--45297734	80	3.2	80	82	7	233	25	21	27	25	1.99
45297477--45297734	119	2.2	119	80	6	274	25	21	27	25	1.99
45304671--45304895	40	5.7	40	85	5	287	24	21	28	25	1.99
45304710--45304918	80	2.6	79	83	7	221	26	20	27	25	1.99
45304671--45304918	119	2.1	119	80	7	272	25	21	27	25	1.99
45312035--45312099	32	2.0	32	100	0	130	21	3	24	50	1.63
45317213--45317326	55	2.1	56	83	11	146	35	21	22	19	1.96
45317238--45317326	27	3.2	28	81	13	112	34	23	21	20	1.96
45317433--45317497	28	2.3	28	89	5	96	30	7	29	32	1.85
45325211--45325237	14	1.9	14	100	0	54	3	0	59	37	1.15
45327827--45327969	43	3.3	43	77	8	132	31	23	19	25	1.98
45329722--45329953	40	5.8	40	91	2	365	22	28	21	26	1.99
45329722--45329953	122	1.9	120	92	1	392	22	28	21	26	1.99
45329722--45329961	82	3.0	81	92	1	383	23	27	21	27	1.99
45338165--45338392	40	5.8	40	93	2	379	23	29	21	25	1.99
45338165--45338392	118	1.9	120	94	1	406	23	29	21	25	1.99
45338165--45338392	78	2.9	78	94	1	384	23	29	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45346584--45346769	35	4.8	39	78	18	139	24	27	20	26	1.99
45346585--45346769	72	2.5	73	82	16	218	24	27	20	27	1.99
45351919--45351996	40	2.0	41	92	5	133	33	26	16	23	1.96
45351917--45352002	39	2.2	39	85	8	129	32	25	19	22	1.97
45360318--45360412	40	2.4	40	90	0	154	29	28	20	22	1.98
45371669--45371706	19	2.0	19	90	10	60	28	5	10	55	1.56
45372832--45372871	14	2.8	14	88	3	53	65	12	2	20	1.38
45373252--45373294	16	2.5	18	85	11	63	16	9	34	39	1.80
45380217--45380285	28	2.5	28	90	4	104	33	26	11	28	1.91
45380571--45380612	15	2.8	16	82	7	52	47	14	2	35	1.57
45382997--45383045	24	2.0	24	100	0	98	36	30	12	20	1.89
45390359--45390579	49	4.6	49	78	12	183	25	29	17	27	1.98
45390454--45390574	44	2.6	47	84	12	162	24	30	17	27	1.97
45390359--45390574	50	4.5	46	78	13	174	25	29	18	27	1.98
45390567--45390618	25	2.1	25	92	3	88	26	19	17	36	1.94
45394488--45394560	35	2.1	35	97	0	137	35	20	8	35	1.83
45399890--45399997	39	2.8	39	79	8	112	25	18	24	32	1.97
45407957--45408109	38	3.9	39	78	10	150	21	21	25	31	1.98
45407957--45408109	39	3.9	39	81	5	157	21	21	25	31	1.98
45411227--45411294	26	2.7	26	81	4	77	14	25	19	41	1.89
45411227--45411293	25	2.7	25	84	6	75	14	23	19	41	1.89
45411330--45411377	25	2.0	25	83	4	62	18	25	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45414696--45414737	11	3.7	11	87	3	57	57	0	4	38	1.20
45414691--45414738	11	4.5	11	79	12	55	56	0	8	35	1.30
45421012--45421057	17	2.7	17	100	0	92	32	8	6	52	1.58
45443568--45443811	108	2.3	108	91	0	398	28	19	24	27	1.99
45448937--45448976	11	3.6	11	90	10	55	82	0	17	0	0.67
45448935--45448976	12	3.2	13	87	12	59	80	0	19	0	0.70
45449348--45449568	40	5.6	41	81	7	253	25	23	25	24	2.00
45452872--45453065	43	4.6	43	84	4	225	28	15	24	31	1.96
45454992--45455061	31	2.3	31	87	0	95	34	4	15	45	1.66
45461468--45461561	22	4.1	22	72	17	84	37	18	22	22	1.94
45461446--45461561	47	2.5	46	79	12	119	34	20	22	22	1.97
45463586--45463715	37	3.5	37	82	0	152	35	13	16	35	1.87
45474304--45474434	54	2.4	54	94	0	235	32	23	19	25	1.98
45482007--45482136	53	2.4	54	90	2	208	32	23	19	25	1.97
45485559--45485610	25	2.1	25	100	0	104	36	3	32	26	1.75
45487528--45487614	44	2.0	43	91	6	140	21	12	24	41	1.88
45487535--45487624	45	2.0	44	89	2	135	23	13	24	38	1.90
45492452--45492490	20	2.0	20	100	0	78	41	5	7	46	1.55
45495131--45495199	28	2.5	28	80	7	86	42	21	15	20	1.89
45496866--45497038	46	3.7	46	79	9	208	22	21	26	29	1.99
45505156--45505552	47	8.4	47	94	3	674	32	7	31	28	1.85
45505156--45505552	143	2.8	143	95	2	696	32	7	31	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45505396--45505468	16	4.6	16	67	21	55	32	4	31	31	1.77
45505463--45505536	22	3.3	22	63	17	53	35	9	28	27	1.88
45508840--45509012	46	3.7	46	78	9	199	21	19	28	30	1.98
45521366--45521480	61	1.9	60	82	5	142	26	37	20	15	1.93
45523736--45523883	56	2.7	54	84	6	163	29	33	17	19	1.95
45525446--45525487	22	2.0	22	85	4	59	52	0	9	38	1.34
45527210--45527256	20	2.4	20	89	3	69	44	2	0	53	1.12
45528662--45528705	10	4.3	10	78	16	54	22	2	2	72	1.07
45535311--45535393	35	2.4	35	95	0	148	32	21	21	24	1.98
45538474--45538539	35	2.0	34	82	11	84	57	1	4	36	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290