genome.fa.s7.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  155  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49807518--49807617	44	2.3	42	81	3	119	23	19	26	32	1.97
49814292--49814370	37	2.1	37	88	4	115	25	30	18	25	1.98
49814489--49815105	47	13.1	47	93	1	1011	28	29	9	32	1.88
49818912--49818953	19	2.2	19	87	8	59	35	2	21	40	1.66
49819526--49819629	42	2.4	44	81	9	126	25	17	24	33	1.96
49819526--49819647	43	2.9	43	78	9	124	22	17	26	33	1.96
49825317--49825351	18	1.9	18	88	11	54	57	28	5	8	1.52
49825316--49825357	18	2.4	18	80	11	52	57	30	4	7	1.47
49828497--49828530	17	2.0	17	94	0	59	26	5	11	55	1.58
49832011--49832082	26	3.0	24	84	10	76	34	13	23	27	1.93
49837601--49838142	47	10.8	51	83	11	669	29	28	9	32	1.88
49837601--49838142	98	5.4	97	85	11	722	29	28	9	32	1.88
49837981--49838009	14	2.1	14	100	0	58	41	13	0	44	1.44
49837930--49838059	65	2.0	65	98	0	251	33	24	6	35	1.82
49837832--49838142	163	1.9	159	96	2	568	30	27	8	33	1.87
49852521--49852889	48	7.6	48	72	9	196	25	27	18	28	1.98
49852521--49852789	96	2.8	96	80	2	272	27	27	17	27	1.98
49852663--49852898	49	4.9	48	80	7	160	24	28	19	27	1.98
49855670--49855845	46	3.8	44	75	10	156	21	18	29	30	1.97
49860537--49860569	17	1.9	17	93	0	57	21	24	27	27	1.99
49871037--49871213	46	3.8	46	78	13	164	29	20	28	20	1.98
49876440--49876472	11	2.9	11	95	4	57	6	12	0	81	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49882495--49882562	29	2.3	29	82	5	84	27	29	13	29	1.94
49882385--49882883	173	2.9	173	95	0	872	31	23	15	30	1.95
49882668--49882735	29	2.3	29	82	5	84	27	29	13	29	1.94
49882837--49882915	29	2.7	30	78	13	101	27	30	16	25	1.97
49890807--49890873	28	2.3	29	82	7	84	28	29	13	28	1.94
49890979--49891047	30	2.3	29	87	7	95	27	31	13	27	1.93
49934988--49935142	27	5.7	26	80	8	159	27	16	28	27	1.97
49934987--49935137	54	2.8	55	81	9	184	27	17	27	27	1.97
49934988--49935142	81	1.9	81	85	5	215	27	16	28	27	1.97
49934980--49935163	27	6.8	26	75	11	97	26	16	28	28	1.97
49934980--49935163	81	2.3	81	78	3	210	26	16	28	28	1.97
49939036--49939191	82	1.9	81	85	3	215	26	16	28	28	1.97
49939035--49939188	55	2.9	52	82	7	175	27	16	27	27	1.97
49939036--49939191	27	5.7	27	81	6	163	26	16	28	28	1.97
49939028--49939212	27	6.8	27	75	9	101	26	16	28	29	1.97
49939028--49939212	82	2.3	81	78	2	210	26	16	28	29	1.97
49941141--49941219	37	2.1	37	88	0	113	26	31	17	24	1.97
49941338--49942028	47	14.4	47	90	3	968	29	29	9	32	1.88
49941391--49942028	145	4.4	141	91	5	1015	30	28	8	32	1.87
49944079--49944179	50	2.0	50	92	0	166	35	15	20	27	1.94
49956710--49957062	47	7.6	47	84	10	447	29	28	8	32	1.87
49956777--49957057	49	6.2	41	82	15	219	30	28	8	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49956786--49957063	89	3.1	87	83	14	373	30	28	8	32	1.87
49956765--49957015	138	1.8	137	94	2	450	31	27	7	33	1.86
49956871--49957062	49	3.9	49	95	2	327	31	27	8	32	1.86
49956871--49957062	97	2.0	97	92	5	325	31	27	8	32	1.86
49960690--49960882	40	4.8	40	95	0	332	23	26	22	26	2.00
49960690--49960912	120	1.9	120	85	1	313	24	26	22	26	2.00
49960704--49960965	120	2.2	120	82	5	298	24	26	22	26	2.00
49961273--49961351	29	2.7	29	86	5	106	27	32	15	24	1.95
49961334--49961435	43	2.4	43	98	0	195	27	36	13	22	1.92
49967714--49967762	20	2.5	20	100	0	98	22	14	36	26	1.92
49968425--49968461	18	2.1	18	95	5	67	35	16	5	43	1.71
49977445--49977546	49	2.1	49	98	0	195	22	22	10	44	1.84
49977598--49977691	48	2.0	48	91	0	152	30	29	18	21	1.97
49980275--49980309	18	1.9	18	88	0	52	37	14	11	37	1.82
49994003--49994037	17	1.9	19	88	11	56	40	14	0	45	1.45
49997413--49997596	40	4.6	40	82	2	217	25	23	25	25	2.00
50005640--50005874	123	1.9	123	98	1	454	37	22	5	35	1.76
50006402--50006498	49	2.0	49	95	0	176	22	19	11	46	1.82
50006554--50006647	48	2.0	48	93	0	161	30	30	17	21	1.96
50020011--50020042	13	2.5	13	94	0	55	37	9	21	31	1.85
50026048--50026225	42	4.4	40	80	10	195	25	26	21	25	2.00
50028531--50028753	40	5.7	40	86	7	271	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50036498--50036721	40	5.7	40	87	4	287	24	21	28	25	1.99
50036498--50036721	79	2.8	80	84	7	287	24	21	28	25	1.99
50036536--50036754	79	2.8	80	84	6	234	26	21	27	24	1.99
50039873--50039899	13	2.1	13	100	0	54	48	14	0	37	1.45
50044457--50044528	26	2.8	26	85	4	83	29	18	25	27	1.98
50047598--50047822	119	1.9	120	83	8	298	25	22	27	24	2.00
50047598--50047822	40	5.7	40	87	5	280	25	22	27	24	2.00
50047605--50047855	79	3.2	79	81	10	271	27	21	26	25	1.99
50050449--50050480	17	1.9	16	93	6	55	75	3	3	18	1.08
50057625--50057829	40	5.2	39	75	6	173	25	25	22	25	2.00
50057625--50057844	80	2.8	79	78	8	214	25	25	22	25	2.00
50066278--50066478	42	4.8	42	83	0	240	30	23	16	28	1.96
50068610--50068644	14	2.5	13	86	13	52	22	2	0	74	0.95
50068611--50068657	24	2.0	24	86	0	67	27	2	0	70	0.99
50073064--50073095	16	1.9	17	93	6	57	56	0	0	43	0.99
50073191--50073224	12	2.9	12	91	4	52	73	0	26	0	0.83
50074979--50075029	20	2.5	20	90	0	75	19	35	31	13	1.91
50077795--50078044	40	6.2	40	93	0	378	27	26	22	24	2.00
50083796--50083827	16	1.9	17	93	6	57	56	0	0	43	0.99
50083850--50083884	14	2.4	15	90	4	54	77	5	11	5	1.12
50097082--50097145	33	2.0	32	84	3	83	20	23	20	35	1.96
50102881--50102919	15	2.6	15	87	0	51	58	5	0	35	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50103005--50103030	10	2.6	10	100	0	52	57	0	34	7	1.27
50113732--50113853	55	2.2	55	79	2	129	25	25	30	18	1.98
50121360--50122144	48	16.4	48	93	1	1281	35	7	27	29	1.84
50124527--50124592	30	2.2	30	94	0	114	22	34	21	21	1.96
50125452--50125574	46	2.6	45	82	8	140	23	29	20	26	1.99
50136541--50136565	7	3.6	7	100	0	50	52	0	16	32	1.44
50142273--50142302	15	2.0	15	93	0	51	43	6	3	46	1.46
50144297--50144336	22	1.9	20	90	10	62	37	0	17	45	1.49
50147007--50147179	46	3.7	46	77	13	192	21	20	27	30	1.98
50147004--50147174	93	1.8	93	92	0	288	21	20	28	29	1.98
50147404--50147441	19	2.0	20	85	15	53	36	0	23	39	1.55
50151631--50151683	22	2.4	21	80	17	63	22	3	7	66	1.34
50152820--50152970	43	3.5	43	80	3	162	29	28	17	25	1.97
50156683--50156734	20	2.5	20	84	3	68	25	11	11	51	1.71
50157488--50157538	25	2.0	25	100	0	102	43	3	33	19	1.70
50160463--50160502	22	1.9	22	85	10	57	72	5	7	15	1.24
50164689--50164742	27	2.0	27	88	0	81	29	33	20	16	1.95
50168808--50168865	23	2.5	22	91	5	89	50	5	31	13	1.64
50169834--50169878	14	3.2	14	87	0	72	48	28	0	22	1.50
50170353--50170515	40	4.1	40	78	7	170	26	23	17	31	1.97
50173923--50174194	46	5.7	48	71	12	174	28	19	30	22	1.98
50175337--50175375	21	1.9	21	94	5	71	10	38	30	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50178547--50178700	28	5.5	28	96	0	256	32	28	12	25	1.93
50186542--50186706	28	5.9	28	97	0	305	34	27	11	26	1.91
50197305--50197555	68	3.8	65	76	9	224	23	29	15	31	1.95
50200308--50200487	46	3.9	45	77	15	179	28	18	28	23	1.98
50202060--50202177	49	2.4	49	91	2	184	32	16	26	24	1.96
50203678--50203774	49	2.0	49	87	0	140	29	10	12	47	1.74
50205629--50205768	20	6.7	20	70	20	67	58	2	0	37	1.18
50205637--50205700	20	3.2	20	89	8	96	54	4	0	40	1.21
50205649--50205705	19	3.0	18	76	19	53	54	5	0	40	1.23
50205714--50205760	11	4.6	10	79	12	51	70	2	0	27	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290