Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  125  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39350681--39350724
19
2.3
19
92
4
70
27
11
11
50
1.72
39350798--39350871
36
2.1
36
82
10
89
41
4
1
52
1.28
39351857--39351907
24
2.1
24
96
0
93
37
7
0
54
1.29
39353211--39353237
14
1.9
14
100
0
54
37
14
18
29
1.91
39355453--39355495
20
2.2
19
83
4
50
51
6
0
41
1.29
39358603--39358670
34
2.0
34
91
0
109
35
14
19
30
1.92
39358969--39359011
22
1.9
23
90
4
70
69
0
2
27
1.00
39362313--39362386
13
5.6
14
73
10
59
37
1
2
58
1.21
39362313--39362386
7
11.3
7
71
11
59
37
1
2
58
1.21
39362425--39362535
56
2.0
56
82
7
136
34
13
16
36
1.88
39365198--39365337
51
2.8
50
84
3
201
27
27
20
24
1.99
39366137--39366196
30
2.0
30
93
0
102
26
25
6
41
1.80
39366462--39366568
52
2.1
52
96
0
196
46
14
12
27
1.79
39368923--39368960
13
2.8
13
85
14
51
39
0
0
60
0.97
39370912--39370951
18
2.2
18
100
0
80
72
0
5
22
1.04
39372464--39372506
13
3.1
14
84
12
54
60
0
0
39
0.97
39383293--39383335
21
2.0
21
100
0
86
4
13
18
62
1.48
39386808--39386850
5
8.6
5
80
19
54
16
0
0
83
0.64
39386808--39386850
6
7.3
6
80
15
54
16
0
0
83
0.64
39386815--39386850
11
3.3
11
100
0
72
16
0
0
83
0.65
39397931--39398051
27
4.5
27
83
4
154
28
17
14
38
1.89
39397931--39398051
54
2.2
54
88
2
181
28
17
14
38
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39400847--39400890
22
2.0
22
86
0
61
52
0
0
47
1.00
39400910--39400951
13
2.9
14
80
13
50
54
0
0
45
0.99
39400914--39400950
16
2.3
16
86
13
58
59
0
0
40
0.97
39403320--39403359
20
2.1
19
85
4
53
30
17
5
47
1.69
39404638--39404757
63
1.9
63
87
3
179
21
17
29
31
1.96
39405863--39405913
22
2.4
21
80
3
57
43
9
9
37
1.71
39406768--39406795
14
2.0
14
100
0
56
57
7
7
28
1.52
39413280--39413427
25
6.0
24
75
12
104
27
21
18
32
1.97
39414124--39414152
10
2.9
10
100
0
58
41
0
10
48
1.37
39417381--39417581
52
4.0
52
74
12
159
25
17
27
29
1.97
39417500--39417590
46
2.0
46
86
0
128
23
16
29
30
1.96
39417591--39417653
28
2.2
28
97
0
117
34
14
19
31
1.91
39421070--39421117
1
48.0
1
78
0
51
0
10
0
89
0.48
39421070--39421117
10
4.7
10
87
12
71
0
10
0
89
0.48
39421070--39421117
21
2.3
21
92
3
80
0
10
0
89
0.48
39421243--39421473
118
2.0
118
92
0
390
28
31
17
22
1.97
39422220--39422310
42
2.2
42
91
0
146
20
10
34
34
1.88
39422236--39422321
42
2.0
42
90
0
136
25
11
31
31
1.91
39422417--39422500
10
8.4
10
73
22
70
79
0
0
20
0.73
39422439--39422499
7
8.9
7
87
5
72
80
0
0
19
0.72
39422424--39422496
29
2.5
28
84
6
92
80
0
0
19
0.71
39422429--39422500
26
2.7
26
85
8
92
80
0
0
19
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39425126--39425177
22
2.4
22
100
0
104
13
21
17
48
1.81
39425656--39425744
29
3.1
29
100
0
178
43
16
17
21
1.88
39427058--39427182
25
5.0
24
69
21
96
38
20
13
27
1.90
39426948--39427182
50
4.7
50
77
9
196
40
20
12
27
1.88
39429519--39429586
29
2.3
29
76
14
77
29
7
0
63
1.21
39429510--39429578
23
3.1
23
74
18
65
28
8
0
62
1.25
39429805--39429830
13
2.0
13
100
0
52
15
15
0
69
1.20
39429716--39429812
3
31.7
3
76
8
79
31
5
2
60
1.30
39431974--39432018
19
2.4
19
88
7
65
22
22
13
42
1.88
39435443--39435488
20
2.2
21
92
3
76
78
4
0
17
0.91
39437131--39437259
44
2.8
45
82
4
152
34
13
24
27
1.93
39439388--39439719
44
7.5
45
69
10
157
29
16
26
27
1.97
39439338--39439639
88
3.4
89
68
9
238
28
18
26
26
1.98
39439744--39440216
88
5.3
87
71
11
289
30
20
21
26
1.98
39439455--39439869
222
1.9
222
79
6
482
30
18
25
25
1.98
39439787--39440268
44
10.8
45
70
13
230
30
19
21
27
1.98
39440057--39440215
87
1.8
87
86
5
232
30
20
20
28
1.98
39440686--39440727
5
8.4
5
79
10
50
21
2
0
76
0.90
39441272--39441358
15
6.0
14
78
12
70
26
8
1
64
1.28
39441244--39441358
29
3.9
28
75
19
92
26
7
2
63
1.35
39441305--39441350
15
2.9
15
93
6
74
26
8
0
65
1.21
39441244--39441373
44
2.8
44
78
17
133
27
7
2
62
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39441492--39441617
3
41.3
3
74
9
87
30
5
1
61
1.28
39441589--39441614
13
2.0
13
100
0
52
23
7
0
69
1.14
39443013--39443052
5
8.4
5
89
10
50
0
12
2
85
0.71
39443018--39443052
18
1.9
18
88
0
52
0
11
2
85
0.69
39444346--39444382
18
2.1
17
90
5
56
67
10
0
21
1.21
39444515--39444544
7
4.3
7
91
0
51
43
0
3
53
1.17
39444506--39444549
14
2.8
17
74
22
51
50
0
2
47
1.13
39446830--39446874
22
2.1
22
83
4
56
55
6
11
26
1.59
39454208--39454251
9
4.9
9
86
8
63
77
4
0
18
0.94
39454208--39454261
16
3.1
17
86
7
65
77
5
0
16
0.94
39454367--39454424
12
5.1
12
78
16
61
0
31
0
68
0.89
39454369--39454425
17
3.1
17
81
18
62
0
29
0
70
0.88
39454370--39454458
21
4.3
21
88
1
135
2
30
0
67
1.03
39454587--39454636
19
2.5
20
87
6
75
14
16
8
62
1.54
39458942--39459129
61
3.1
61
66
17
156
43
3
5
47
1.45
39458877--39459151
120
2.3
120
90
1
426
42
2
4
49
1.38
39458943--39459126
64
3.1
59
64
21
130
42
3
5
47
1.46
39459110--39459144
18
2.0
17
88
5
52
45
0
0
54
0.99
39459315--39459409
45
2.1
45
88
1
138
32
27
5
34
1.79
39459390--39459441
16
3.2
16
94
0
86
34
36
0
28
1.58
39459843--39459910
20
3.5
20
69
15
54
36
10
1
51
1.45
39460933--39460984
27
1.9
27
84
0
68
38
11
23
26
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39461733--39461798
30
2.2
29
84
7
89
46
27
3
22
1.66
39461804--39461846
18
2.4
18
88
11
63
51
0
0
48
1.00
39461843--39461876
16
2.1
16
88
0
50
67
2
0
29
1.05
39464024--39464132
54
2.0
54
98
0
209
36
2
20
40
1.67
39464040--39464130
27
3.4
26
69
13
76
39
3
17
39
1.66
39464672--39464728
30
2.0
30
80
12
68
36
8
19
35
1.83
39464792--39464864
38
1.9
38
97
0
137
27
2
15
54
1.54
39464797--39464879
38
2.2
38
84
0
103
28
3
18
49
1.64
39465969--39466134
48
3.5
48
81
4
169
29
21
24
24
1.99
39466154--39466279
49
2.6
49
86
6
166
28
23
26
21
1.99
39468903--39468931
12
2.4
12
100
0
58
31
0
51
17
1.45
39475730--39475788
15
4.0
15
80
4
66
42
0
23
33
1.55
39482070--39482244
46
3.8
45
77
13
194
28
29
21
21
1.98
39482077--39482245
93
1.8
93
93
2
295
28
28
21
21
1.98
39492545--39492602
19
3.1
19
83
11
59
31
0
6
62
1.22
39492560--39492603
20
2.3
19
80
11
54
27
0
4
68
1.09
39492559--39492609
20
2.6
19
76
11
50
29
0
5
64
1.17
39496686--39496731
18
2.5
18
86
10
58
41
13
8
36
1.75
39503694--39503743
18
2.7
18
81
6
55
60
6
0
34
1.21
39504170--39504200
16
1.9
16
93
0
53
70
0
0
29
0.87
39504332--39504401
30
2.3
32
80
14
85
48
15
11
24
1.78
39504413--39504453
21
2.0
21
90
0
64
26
9
26
36
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39506052--39506085
11
3.1
11
86
0
50
0
35
0
64
0.94
39514152--39514206
23
2.5
22
78
16
60
38
5
0
56
1.23
39520141--39520188
3
16.0
3
91
0
78
2
33
2
62
1.18
39524614--39524639
12
2.2
12
100
0
52
42
23
15
19
1.89
39532012--39532045
16
2.1
17
88
5
52
52
0
5
41
1.25
39533002--39533139
40
3.5
40
72
10
124
28
16
23
31
1.96
39536673--39536759
43
2.0
43
93
0
147
24
22
2
50
1.61
39547040--39547078
20
2.0
20
90
5
62
64
5
2
28
1.28
39551524--39551560
19
1.9
19
88
0
56
51
0
0
48
1.00
39554944--39555016
7
10.4
7
80
5
67
43
1
24
30
1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290