Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  276  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88459009--88459071
30
2.1
29
85
2
81
38
0
0
61
0.96
88458977--88459071
49
1.9
49
85
10
131
38
0
1
60
1.04
88459012--88459071
10
6.0
10
69
7
50
40
0
0
60
0.97
88461689--88461726
11
3.6
11
79
13
53
60
0
7
31
1.25
88461689--88461732
20
2.2
20
100
0
88
61
0
9
29
1.27
88467036--88467093
29
2.0
29
100
0
116
13
31
20
34
1.92
88468017--88468041
9
2.8
9
100
0
50
56
0
0
44
0.99
88468620--88468649
12
2.5
12
100
0
60
66
23
10
0
1.21
88469097--88469138
19
2.2
19
100
0
84
59
0
4
35
1.19
88482787--88482829
22
2.0
22
100
0
86
25
4
18
51
1.66
88486444--88486494
20
2.6
20
70
14
52
43
0
3
52
1.19
88486575--88486664
39
2.2
40
88
3
128
40
3
4
52
1.38
88493504--88493537
17
2.0
17
94
0
59
44
50
0
5
1.26
88498143--88498176
17
2.0
17
94
0
59
44
50
0
5
1.26
88503442--88503483
14
3.1
14
79
6
59
30
52
2
14
1.54
88503847--88503968
3
41.0
3
71
16
60
28
4
1
65
1.20
88507978--88508021
20
2.1
21
87
4
63
38
22
22
15
1.92
88516126--88516251
45
2.8
45
78
4
130
29
19
26
24
1.99
88515712--88516182
135
3.5
135
89
1
694
28
19
23
28
1.99
88528302--88528348
25
1.9
24
87
12
69
21
8
4
65
1.37
88528551--88528576
12
2.2
12
100
0
52
30
0
0
69
0.89
88533090--88533132
23
1.9
23
85
4
61
48
0
4
46
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88533099--88533143
23
1.9
23
86
4
63
46
0
4
48
1.22
88536892--88536972
34
2.4
33
77
2
81
43
9
23
23
1.83
88536979--88537062
29
2.7
32
75
14
86
55
5
11
26
1.58
88537834--88537883
23
2.2
22
82
3
55
64
4
4
28
1.30
88542157--88542200
19
2.2
20
88
4
63
40
0
6
52
1.28
88545043--88545092
10
5.0
10
81
13
59
22
8
2
68
1.26
88553004--88553063
10
6.0
10
84
11
79
21
8
1
68
1.25
88566135--88566280
68
2.2
68
92
1
240
51
3
10
34
1.53
88573059--88573089
13
2.4
13
94
0
53
45
3
9
41
1.53
88573396--88573439
22
1.9
22
86
9
61
50
13
11
25
1.75
88573683--88573732
15
3.4
15
83
5
57
20
30
24
26
1.98
88577173--88577231
21
2.7
21
75
17
57
64
1
25
8
1.31
88577178--88577229
27
1.9
27
84
0
68
65
1
25
7
1.30
88580443--88580644
104
1.9
104
97
0
386
33
19
15
31
1.93
88585268--88585303
18
2.0
18
100
0
72
38
22
16
22
1.93
88592301--88592352
26
2.0
26
96
0
95
38
13
19
28
1.89
88593497--88593590
47
2.0
47
100
0
188
36
14
21
27
1.93
88602824--88603278
227
2.0
227
98
0
883
34
9
17
39
1.82
88608045--88608114
7
9.9
7
81
3
86
15
2
38
42
1.62
88608456--88608585
61
2.1
60
85
4
179
24
26
23
25
2.00
88609568--88609627
26
2.4
24
83
8
75
68
3
0
28
1.05
88609598--88609656
21
2.8
22
85
7
70
69
6
0
23
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88609703--88609735
15
2.1
16
88
11
50
69
0
0
30
0.88
88613909--88614037
44
3.0
44
84
6
185
31
35
17
15
1.91
88616076--88616156
29
2.8
29
83
9
94
22
7
0
70
1.12
88616076--88616128
16
3.4
16
77
20
58
20
7
0
71
1.10
88622996--88623052
29
2.0
29
92
0
96
28
26
17
28
1.98
88622998--88623066
29
2.4
29
85
0
84
27
30
17
24
1.97
88625672--88625700
13
2.1
14
93
6
51
82
10
0
6
0.83
88626923--88626961
3
13.0
3
100
0
78
33
0
0
66
0.92
88627611--88627658
13
3.5
13
78
10
60
37
4
0
58
1.18
88627613--88627668
28
2.0
28
100
0
112
35
3
0
60
1.14
88630208--88630260
25
2.1
26
82
10
65
58
1
5
33
1.32
88633270--88633318
15
3.3
15
70
0
53
48
12
8
30
1.69
88637181--88637238
24
2.6
23
81
10
75
63
1
3
31
1.21
88637180--88637231
12
4.3
12
78
9
52
65
1
3
28
1.21
88637819--88637868
23
2.1
23
82
10
57
24
2
4
70
1.15
88639426--88639450
12
2.1
12
100
0
50
84
0
0
16
0.63
88640125--88640189
21
3.2
21
69
8
71
36
6
3
53
1.41
88640133--88640203
23
3.3
23
66
22
73
32
4
5
57
1.41
88640138--88640201
19
3.3
19
67
16
58
31
4
6
57
1.44
88640119--88640203
40
2.1
40
100
0
170
35
4
4
55
1.42
88640136--88640209
21
3.6
21
72
7
80
32
4
5
58
1.40
88652537--88652714
43
4.1
43
76
10
164
33
23
22
21
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88652854--88652978
43
2.9
43
78
4
144
33
20
23
22
1.97
88653571--88653624
23
2.3
23
96
0
99
40
42
0
16
1.48
88654822--88654884
21
3.2
21
65
17
62
36
6
3
53
1.42
88654816--88654898
38
2.2
38
100
0
166
34
4
4
55
1.42
88654833--88654904
21
3.6
21
69
14
71
31
4
5
58
1.40
88655240--88655286
2
24.0
2
86
4
69
44
0
4
51
1.21
88656581--88656619
10
3.7
10
80
12
51
46
20
2
30
1.64
88656579--88656623
22
2.0
22
95
0
81
46
20
4
28
1.69
88657977--88658112
70
1.9
70
92
0
227
35
16
19
29
1.93
88659432--88659465
16
2.0
16
88
11
50
76
0
0
23
0.79
88663624--88663672
15
3.5
15
72
16
50
12
57
0
30
1.36
88664118--88664180
23
2.7
23
77
18
85
55
6
0
38
1.25
88664118--88664207
46
2.0
46
84
8
121
55
4
2
37
1.32
88665348--88665455
7
15.1
7
70
11
67
37
39
0
22
1.54
88665482--88665569
46
1.9
46
97
0
167
40
26
3
29
1.72
88665498--88665582
21
3.9
21
73
11
80
43
25
2
28
1.67
88665748--88666149
81
4.9
80
82
5
432
19
25
23
32
1.97
88665764--88666150
41
9.5
41
85
5
439
19
25
23
31
1.98
88671482--88671537
21
2.7
21
78
8
60
14
8
5
71
1.29
88673424--88673465
18
2.3
18
88
8
59
47
0
0
52
1.00
88676490--88676533
15
2.8
16
79
10
54
29
4
0
65
1.12
88676486--88676536
16
3.2
16
78
18
61
33
3
0
62
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88677668--88677720
23
2.3
23
90
0
79
11
15
24
49
1.77
88678432--88678704
137
2.0
137
95
1
494
38
12
16
31
1.87
88679176--88679223
18
2.5
19
90
10
71
47
16
4
31
1.65
88682042--88682118
40
1.9
40
89
0
118
15
12
35
36
1.86
88686819--88686849
5
6.2
5
96
0
53
0
0
58
41
0.98
88689930--88689969
16
2.4
16
83
4
53
77
5
2
15
1.04
88692969--88693025
17
3.5
15
84
15
53
38
10
15
35
1.82
88692969--88693047
36
2.1
38
90
9
126
37
10
16
35
1.82
88692969--88693047
19
4.2
19
90
9
126
37
10
16
35
1.82
88700592--88700650
31
1.9
31
85
0
82
35
10
11
42
1.76
88701899--88701950
24
2.2
24
92
0
86
51
7
3
36
1.49
88704403--88704515
6
18.3
6
67
18
54
47
13
20
18
1.81
88704435--88704487
19
2.8
19
85
0
79
45
13
22
18
1.84
88704430--88704515
25
3.7
25
74
13
85
46
13
20
18
1.83
88704639--88704739
27
3.8
26
86
5
121
36
19
23
19
1.95
88704898--88704962
22
3.0
22
77
8
69
30
21
26
21
1.98
88705396--88705529
27
5.0
27
88
0
187
24
22
18
34
1.96
88705384--88705496
54
2.1
55
80
8
133
26
20
23
30
1.98
88705521--88705624
27
3.9
27
65
12
70
31
7
24
36
1.84
88705413--88705565
81
1.9
81
81
5
184
26
18
20
34
1.95
88709324--88709832
255
2.0
253
93
2
869
37
13
13
34
1.84
88711531--88711637
45
2.4
45
82
3
135
41
17
19
21
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88711533--88711652
45
2.5
51
73
18
128
40
18
20
20
1.92
88712273--88712298
13
2.0
13
100
0
52
61
0
0
38
0.96
88712288--88712337
26
1.9
26
84
8
66
54
4
0
42
1.19
88718351--88718445
45
2.1
45
84
0
118
42
15
16
25
1.88
88718426--88718450
12
2.1
12
100
0
50
40
20
24
16
1.91
88718805--88718843
14
2.8
14
96
0
69
43
23
2
30
1.67
88719097--88719129
5
7.0
5
86
13
52
60
0
0
39
0.97
88719104--88719129
13
2.0
13
100
0
52
61
0
0
38
0.96
88725131--88725168
18
2.1
18
100
0
76
55
13
10
21
1.67
88735076--88735126
3
17.0
3
76
15
52
33
0
1
64
1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290