genome.fa.s7.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  127  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39805759--39805792	17	2.0	17	94	0	59	44	5	0	50	1.26
39805764--39805811	17	3.0	16	79	17	55	45	6	2	45	1.40
39805852--39805886	18	2.0	17	88	5	52	40	0	0	60	0.97
39805775--39806031	128	2.0	127	89	6	394	42	2	5	49	1.39
39805980--39806014	18	2.0	17	88	5	52	45	0	0	54	0.99
39805968--39806242	147	1.9	149	96	1	509	47	2	3	46	1.33
39806127--39806161	18	2.0	17	88	5	52	45	0	0	54	0.99
39806323--39806417	45	2.1	45	86	1	129	33	26	5	34	1.79
39806398--39806465	16	4.2	16	94	0	109	36	35	0	27	1.58
39809125--39809275	62	2.4	62	87	2	205	17	31	29	22	1.96
39812476--39812615	21	6.7	21	82	0	154	47	17	18	17	1.83
39812477--39812629	42	3.6	42	89	0	198	47	16	18	16	1.83
39812479--39812634	21	7.4	21	81	0	141	48	16	19	16	1.81
39814148--39814223	28	2.7	28	87	4	109	31	0	23	44	1.54
39814289--39814719	126	3.4	126	83	4	539	39	14	17	28	1.89
39814786--39814858	25	2.9	25	77	4	85	53	1	23	21	1.54
39817891--39818018	58	2.2	59	85	7	170	52	7	3	35	1.49
39821811--39821853	11	4.2	11	77	17	56	32	0	0	67	0.91
39821811--39821848	19	2.0	19	89	0	58	31	0	0	68	0.90
39828414--39828476	32	2.0	32	87	0	90	34	20	9	34	1.85
39828695--39828762	33	2.1	33	94	0	118	22	10	22	45	1.82
39830589--39830913	41	7.9	40	88	3	407	32	20	24	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39830910--39830957	18	2.8	17	81	12	53	56	25	2	16	1.51
39830954--39831001	22	2.1	22	84	3	60	50	25	0	25	1.50
39831324--39831371	14	3.4	14	80	5	60	25	2	25	47	1.62
39831329--39831371	15	2.9	15	82	3	61	23	2	27	46	1.64
39831396--39831459	21	3.1	21	75	18	62	18	0	45	35	1.50
39831448--39831511	14	4.5	14	80	9	60	21	0	31	46	1.52
39831393--39831512	7	17.0	7	68	14	50	20	0	39	40	1.53
39831659--39831703	22	2.0	22	83	8	56	20	0	33	46	1.51
39832077--39832141	8	8.6	7	93	3	85	67	3	3	26	1.20
39832175--39832220	23	2.0	24	86	4	67	65	8	0	26	1.21
39834818--39834854	17	2.2	17	100	0	74	43	0	13	43	1.44
39834820--39834866	10	4.9	10	82	17	64	46	0	10	42	1.38
39834855--39834884	16	1.9	15	93	6	51	46	3	6	43	1.46
39834820--39834866	17	2.5	20	86	13	64	46	0	10	42	1.38
39837705--39837801	43	2.3	43	87	7	135	22	20	28	27	1.99
39850057--39850083	12	2.2	12	100	0	54	51	0	7	40	1.30
39856372--39856429	30	1.9	30	89	0	89	15	32	32	18	1.93
39859474--39859525	20	2.8	18	78	21	63	51	5	1	40	1.37
39874608--39874729	45	2.7	45	88	2	174	31	26	15	26	1.96
39884329--39884623	148	2.0	148	95	0	536	27	21	18	32	1.97
39885914--39885949	18	2.0	18	100	0	72	16	11	22	50	1.77
39889670--39889694	12	2.1	12	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39892299--39892337	17	2.2	18	86	13	55	53	12	25	7	1.65
39893375--39893402	5	5.6	5	100	0	56	82	0	0	17	0.68
39893727--39893766	20	2.0	21	85	5	55	42	0	20	37	1.52
39896661--39896748	18	4.8	18	68	15	54	10	23	1	64	1.31
39899223--39899531	48	6.5	46	70	10	151	25	21	29	23	1.99
39899252--39899529	48	5.8	49	73	9	180	26	20	29	23	1.99
39899353--39899531	97	1.8	99	89	2	281	26	21	29	22	1.99
39902537--39902657	51	2.4	50	82	10	149	53	2	0	42	1.19
39930195--39930229	17	2.1	17	100	0	70	28	42	0	28	1.56
39930833--39930869	16	2.4	15	86	8	56	0	8	2	89	0.58
39931657--39931690	18	1.9	18	88	5	52	61	20	0	17	1.34
39932050--39932082	16	2.1	16	94	0	57	51	0	0	48	1.00
39932973--39933002	15	2.0	15	100	0	60	33	0	0	66	0.92
39934129--39934177	22	2.2	21	82	10	62	22	0	22	55	1.44
39934160--39934217	8	7.4	8	74	18	50	15	1	29	53	1.52
39934142--39934238	30	3.2	31	77	12	96	18	1	27	52	1.52
39937862--39937890	7	4.3	7	95	4	51	34	27	13	24	1.93
39947965--39948002	14	2.4	17	87	12	55	47	0	0	52	1.00
39951097--39951123	12	2.2	12	100	0	54	74	0	7	18	1.05
39951422--39951481	29	2.1	28	81	9	68	36	13	5	45	1.65
39970506--39970542	18	2.1	18	89	0	56	51	13	5	29	1.63
39970595--39970661	31	2.2	31	83	5	82	19	53	0	26	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39973779--39974122	50	6.9	50	75	4	307	29	25	18	26	1.98
39973889--39974066	51	3.5	51	76	4	207	30	23	19	26	1.98
39973790--39974121	101	3.3	101	85	4	397	29	24	18	26	1.98
39976649--39976733	41	2.0	42	97	2	163	34	24	14	27	1.94
39990034--39990186	38	4.0	38	86	1	198	31	26	20	21	1.98
39990043--39990186	76	1.9	78	89	2	229	30	24	22	22	1.99
39999312--39999490	93	1.9	93	84	7	238	25	27	18	27	1.98
39999317--39999539	49	4.7	48	73	10	206	23	27	19	30	1.98
40006249--40006356	54	2.0	54	94	0	189	35	21	24	19	1.96
40020805--40021021	40	5.5	40	88	3	289	25	22	27	24	2.00
40028477--40028505	12	2.4	12	100	0	58	27	24	0	48	1.51
40031717--40031755	21	1.9	20	89	5	60	33	0	20	46	1.51
40032319--40032545	48	4.7	48	87	1	312	20	18	26	34	1.95
40038132--40038164	17	2.0	17	88	5	50	15	6	12	66	1.42
40041386--40041539	42	3.6	41	75	11	141	29	15	24	30	1.96
40049214--40049361	44	3.5	42	83	13	162	25	20	25	29	1.99
40049201--40049364	43	3.8	43	80	10	183	24	20	25	30	1.98
40052884--40052954	24	3.0	24	95	0	124	36	0	38	25	1.56
40052884--40052977	48	1.9	48	81	10	111	36	3	37	23	1.71
40054371--40054481	27	4.1	26	82	7	132	16	22	23	37	1.93
40054371--40054481	54	2.1	54	87	3	161	16	22	23	37	1.93
40055473--40055560	28	3.1	29	79	10	94	35	21	22	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40055666--40055758	28	3.3	28	95	0	159	31	8	26	33	1.87
40064474--40064538	28	2.3	28	94	0	112	33	27	7	30	1.85
40064645--40064734	28	3.2	27	82	7	110	20	24	22	33	1.97
40065717--40065750	10	3.3	10	84	8	50	26	8	11	52	1.67
40072250--40072311	28	2.2	28	94	0	106	33	27	8	30	1.86
40072431--40072510	27	2.9	27	88	5	115	20	25	21	33	1.97
40072424--40072535	55	2.0	56	84	5	147	18	24	21	35	1.95
40078445--40078489	3	15.0	3	86	9	65	68	0	31	0	0.89
40078526--40078588	14	4.4	14	75	13	58	68	0	31	0	0.90
40078531--40078588	19	3.4	17	76	17	50	65	0	34	0	0.93
40079164--40079775	147	4.1	146	79	9	652	55	6	7	30	1.54
40079453--40079517	15	4.4	14	70	16	51	69	1	4	24	1.16
40079164--40079724	302	1.9	300	88	5	864	55	6	8	29	1.54
40079548--40079588	22	2.0	22	90	9	68	58	7	0	34	1.26
40086155--40086194	21	2.0	20	90	5	62	0	37	0	62	0.95
40086153--40086195	10	4.3	10	81	18	54	0	34	0	65	0.93
40086289--40086358	27	2.6	27	93	0	113	18	35	27	18	1.94
40086396--40086429	15	2.3	15	90	5	52	14	8	2	73	1.19
40091905--40091948	20	2.3	19	92	4	70	25	2	0	72	0.96
40092146--40092205	23	2.8	20	71	24	59	58	1	1	38	1.18
40092145--40092214	21	3.2	22	72	22	67	58	1	1	38	1.16
40097397--40097432	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40097550--40097628	31	2.6	29	82	6	86	39	3	6	50	1.46
40099402--40099455	27	2.0	27	82	7	65	35	20	25	18	1.95
40100777--40100822	19	2.5	18	82	3	56	63	0	8	28	1.24
40100767--40100820	28	1.9	28	84	0	72	62	1	9	25	1.35
40100786--40100821	18	1.9	19	88	5	56	63	0	11	25	1.27
40103370--40103662	90	3.3	87	84	7	351	37	17	16	27	1.92
40120630--40120751	49	2.5	49	94	2	210	61	15	0	22	1.34
40121137--40121161	9	2.8	9	100	0	50	0	44	0	56	0.99
40123689--40123727	20	2.0	20	94	0	69	61	0	0	38	0.96
40124304--40124352	19	2.5	20	84	12	59	34	0	8	57	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290