genome.fa.s7.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  166  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53762887--53762929	22	2.0	22	90	9	70	20	13	27	37	1.91
53764894--53764945	22	2.4	23	78	18	58	25	0	11	63	1.28
53765071--53765117	22	2.1	22	96	0	85	34	14	14	36	1.88
53767091--53767173	41	2.0	40	93	2	139	32	22	18	26	1.97
53773411--53773628	40	5.5	40	90	2	307	25	28	22	23	1.99
53781744--53781951	40	5.2	40	90	3	296	25	28	22	22	1.99
53789906--53789950	21	2.1	21	84	8	56	42	4	11	42	1.60
53791649--53791803	44	3.7	42	72	15	140	31	23	20	24	1.98
53795168--53795399	50	4.6	50	73	8	193	31	25	17	25	1.97
53795212--53795445	50	4.6	51	76	4	195	32	26	17	24	1.97
53805759--53805802	21	2.1	21	87	8	63	40	11	11	36	1.77
53811432--53811500	29	2.3	29	87	9	95	34	26	7	31	1.84
53811618--53811692	27	2.7	27	81	6	87	22	26	18	32	1.97
53812769--53812802	10	3.3	10	84	8	50	29	8	8	52	1.62
53819292--53819357	28	2.3	29	92	2	107	34	27	7	30	1.85
53819463--53819552	27	3.2	28	81	7	112	18	24	24	32	1.97
53822731--53822906	46	3.8	46	74	10	169	22	21	27	29	1.99
53822728--53822899	93	1.8	93	89	0	272	22	21	27	28	1.99
53828667--53828726	30	2.0	30	86	0	84	28	23	8	40	1.83
53832606--53832647	12	3.8	11	84	9	59	11	9	26	52	1.68
53833234--53833286	19	2.7	20	83	11	65	47	15	7	30	1.73
53833210--53833292	20	4.2	20	71	11	64	43	14	7	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53833430--53833468	20	2.0	20	89	0	60	46	12	10	30	1.75
53836252--53836529	120	2.3	119	80	7	289	36	8	19	35	1.82
53836446--53836484	20	2.0	20	85	10	53	30	12	17	38	1.88
53841249--53841282	12	2.8	12	81	0	50	61	0	23	14	1.33
53851847--53851943	50	1.9	50	93	0	167	50	16	10	22	1.75
53861549--53861583	14	2.5	14	100	0	70	31	0	14	54	1.40
53861868--53862494	343	1.8	339	85	2	889	29	18	17	34	1.94
53869367--53869406	15	2.9	14	88	7	55	2	20	2	75	1.04
53869450--53869499	25	2.2	23	86	13	68	8	20	0	72	1.10
53870886--53870915	15	2.0	15	93	0	51	40	10	0	50	1.36
53872161--53872219	29	2.0	29	96	0	109	45	13	8	32	1.74
53873590--53873709	56	2.2	56	95	1	215	24	7	25	42	1.80
53873593--53873682	28	3.2	28	63	17	69	23	8	25	42	1.83
53876940--53877190	80	3.2	80	94	0	423	24	21	27	26	1.99
53876939--53877190	40	6.3	40	81	0	299	24	21	27	26	1.99
53882789--53882829	21	1.9	22	85	5	57	26	4	21	46	1.72
53885910--53886074	42	3.9	42	82	1	204	27	23	15	33	1.95
53885910--53886074	85	2.0	84	83	1	213	27	23	15	33	1.95
53891279--53891445	46	3.6	46	77	16	191	29	31	19	20	1.97
53891287--53891457	93	1.8	93	91	0	279	28	30	20	20	1.98
53891284--53891473	46	4.1	45	72	16	147	28	30	20	21	1.98
53897239--53897272	17	2.0	17	88	11	52	64	0	14	20	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53900107--53900291	101	1.8	102	86	2	273	25	16	25	32	1.96
53900103--53900297	50	3.8	50	76	2	201	26	16	24	32	1.96
53900110--53900331	101	2.2	102	80	1	239	26	16	26	31	1.96
53900496--53900525	16	1.9	15	93	6	51	43	0	23	33	1.54
53906336--53906369	15	2.3	15	89	0	50	58	32	0	8	1.29
53919021--53919196	46	3.8	46	80	10	205	22	21	27	28	1.99
53919018--53919188	93	1.8	93	92	0	288	22	22	27	27	1.99
53922138--53922193	15	3.7	15	88	7	87	12	16	10	60	1.58
53924102--53924277	46	3.8	46	78	10	187	22	21	27	28	1.99
53924099--53924270	93	1.8	93	91	0	281	22	22	27	27	1.99
53927166--53927241	29	2.6	29	93	0	125	17	18	31	32	1.94
53933256--53933305	19	2.7	19	82	14	61	54	0	4	42	1.19
53933314--53933359	23	2.0	23	100	0	92	47	4	8	39	1.54
53935849--53936034	41	4.6	41	89	4	254	26	24	26	23	2.00
53935849--53936070	81	2.8	79	84	5	252	26	23	26	23	2.00
53938932--53938983	14	3.8	13	77	12	52	59	3	1	34	1.27
53939143--53939189	24	2.0	24	86	0	67	27	34	4	34	1.77
53943174--53943333	43	3.7	43	85	3	216	25	19	27	28	1.99
53943150--53943333	43	4.3	42	84	2	215	25	17	27	28	1.98
53943150--53943333	85	2.2	86	85	3	228	25	17	27	28	1.98
53946418--53946461	20	2.2	20	84	8	54	36	9	4	50	1.55
53958609--53958762	28	5.5	28	91	1	229	27	12	27	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53965806--53965959	28	5.5	28	91	1	229	27	12	27	33	1.92
53976482--53976554	35	2.1	35	97	0	137	17	24	27	30	1.97
53980144--53980182	19	2.1	19	85	0	51	43	20	17	17	1.88
53981783--53981815	16	2.1	15	94	5	57	66	0	3	30	1.06
53983210--53983279	23	3.0	23	100	0	140	25	12	8	52	1.67
53986376--53986551	50	3.5	49	80	7	176	28	27	18	26	1.98
53986376--53986562	101	1.9	99	84	4	250	27	28	18	25	1.98
53988692--53988747	15	3.7	15	77	17	71	62	12	14	10	1.55
53991798--53991875	23	3.2	23	64	22	59	28	29	16	25	1.97
53991756--53991932	51	3.5	51	83	4	191	29	27	16	25	1.97
54001390--54001421	13	2.4	14	94	5	57	53	9	0	37	1.34
54006422--54006645	79	2.8	77	80	9	245	24	27	22	25	2.00
54006422--54006645	40	5.7	39	83	9	242	24	27	22	25	2.00
54008525--54008708	40	4.6	40	82	6	196	23	20	27	28	1.99
54008525--54008705	80	2.3	81	83	9	221	23	20	27	27	1.99
54008606--54008755	40	3.8	38	80	8	122	24	22	28	24	1.99
54016412--54016594	40	4.6	40	81	8	187	24	20	27	27	1.99
54016412--54016591	79	2.3	81	83	10	221	23	21	27	27	1.99
54016465--54016641	40	4.5	38	80	7	122	24	20	28	26	1.99
54019998--54020175	78	2.3	80	83	4	220	26	20	26	25	1.99
54019995--54020175	39	4.6	38	80	6	184	26	21	27	24	1.99
54020032--54020208	78	2.3	78	82	6	198	28	20	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54023254--54023573	48	6.8	46	72	14	203	23	29	19	28	1.98
54023275--54023573	140	2.1	140	82	8	367	23	29	18	28	1.98
54025128--54025171	19	2.4	19	85	7	56	50	0	9	40	1.34
54025266--54025294	15	1.9	15	100	0	58	41	0	0	58	0.98
54025842--54026059	109	2.0	109	99	0	427	27	20	28	22	1.98
54027708--54027786	26	2.9	26	74	7	68	37	15	15	31	1.88
54031677--54031736	27	2.3	27	91	2	95	33	6	16	43	1.74
54033707--54033735	14	2.0	15	93	6	51	31	27	0	41	1.56
54035069--54035116	24	2.0	24	87	0	69	33	6	20	39	1.78
54038240--54038336	48	2.0	48	100	0	194	28	12	14	44	1.81
54057003--54057127	46	2.7	45	81	6	142	24	31	17	26	1.97
54056910--54057177	94	2.9	94	75	12	257	25	29	17	27	1.98
54072093--54072316	40	5.7	40	83	9	255	26	27	21	24	1.99
54072093--54072316	79	2.8	79	83	6	256	26	27	21	24	1.99
54082209--54082296	44	2.0	44	95	0	158	34	15	7	42	1.77
54084772--54084916	40	3.6	40	85	5	186	24	24	26	24	2.00
54104315--54104382	27	2.5	27	87	0	100	29	23	23	23	1.99
54119637--54119804	24	7.0	24	93	2	248	25	21	24	28	1.99
54119855--54119920	20	3.3	20	93	0	114	31	21	12	34	1.90
54119855--54119909	11	5.4	11	70	16	55	30	20	12	36	1.90
54127715--54127906	24	8.0	24	92	1	296	28	21	22	27	1.99
54127957--54128020	20	3.3	20	84	8	87	37	20	9	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54127962--54128014	18	2.8	20	88	8	83	39	18	9	32	1.83
54128057--54128104	25	1.9	25	86	0	69	25	16	25	33	1.96
54160223--54160275	25	2.1	26	86	10	74	32	5	1	60	1.31
54161161--54161186	3	8.7	3	100	0	52	65	0	34	0	0.93
54170662--54170705	22	2.0	23	90	4	72	40	0	4	54	1.21
54170662--54170712	20	2.5	20	83	6	57	37	0	5	56	1.23
54175799--54175879	40	2.0	40	97	0	153	24	8	17	49	1.74
54180578--54180618	21	1.9	22	85	5	57	12	21	26	39	1.89
54182227--54182360	63	2.1	65	83	2	164	28	17	6	47	1.73
54184769--54184978	28	7.5	28	93	1	341	27	11	26	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290