genome.fa.s7.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  128  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40125132--40125168	11	3.5	11	82	14	51	54	0	0	45	1.00
40125331--40125367	10	3.7	10	89	10	58	45	0	0	54	1.00
40125337--40125370	11	3.1	11	91	8	52	41	0	0	58	0.98
40125549--40125599	25	2.0	25	96	0	93	49	3	9	37	1.55
40127672--40127759	20	4.2	21	81	11	92	28	23	35	12	1.91
40134580--40134762	40	4.6	40	90	4	291	23	24	28	23	2.00
40134576--40134762	78	2.4	80	89	7	317	24	24	27	23	2.00
40136386--40136433	20	2.5	20	89	3	71	50	0	0	50	1.00
40136506--40136543	19	2.1	18	85	9	51	47	5	2	44	1.39
40139630--40139690	26	2.4	25	78	10	70	44	0	4	50	1.23
40139630--40139681	25	2.1	25	85	7	70	44	0	5	50	1.26
40139653--40139706	20	2.6	22	72	13	53	46	0	3	50	1.19
40144158--40144210	26	2.0	27	85	7	74	24	15	22	37	1.92
40145695--40145778	26	3.2	26	91	0	132	34	22	5	36	1.79
40147937--40148573	177	3.6	176	83	4	771	27	23	18	30	1.98
40173084--40173165	43	2.0	42	90	4	130	39	21	7	31	1.81
40187492--40187725	48	4.9	48	73	2	182	28	20	25	26	1.99
40187492--40187667	96	1.8	96	82	2	228	30	19	23	26	1.98
40192167--40192297	47	2.8	47	76	2	138	25	14	25	34	1.94
40193264--40193321	28	2.1	28	90	0	89	20	25	32	20	1.97
40195175--40195204	15	2.1	14	93	6	51	33	10	6	50	1.62
40196349--40196401	20	2.7	20	76	5	54	69	3	1	24	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40197419--40197460	21	2.0	21	100	0	84	42	14	19	23	1.87
40208770--40208794	13	1.9	13	100	0	50	44	8	0	48	1.32
40211725--40211932	105	2.0	105	100	0	416	39	17	9	33	1.82
40213413--40213589	89	2.0	89	92	4	295	53	11	11	23	1.69
40214171--40214199	3	9.7	3	100	0	58	65	0	0	34	0.93
40215258--40215297	16	2.5	17	80	19	50	40	2	0	57	1.12
40216719--40216747	14	2.1	14	93	6	51	68	0	0	31	0.89
40221680--40221739	28	2.1	27	82	11	75	51	1	0	46	1.10
40221719--40221743	9	2.8	9	100	0	50	60	0	0	40	0.97
40221684--40221754	36	2.0	35	81	10	81	57	1	0	40	1.07
40227433--40227467	16	2.1	17	89	5	54	48	0	8	42	1.33
40228532--40228633	30	3.4	31	77	8	104	30	20	3	45	1.69
40229003--40229037	3	11.3	3	93	6	61	68	0	31	0	0.90
40229174--40229238	29	2.2	28	84	10	78	67	21	9	1	1.27
40229351--40229460	13	8.4	13	72	19	86	79	0	20	0	0.74
40229350--40229468	8	14.0	8	75	16	98	78	0	21	0	0.74
40229355--40229405	14	3.7	14	84	12	70	76	0	23	0	0.79
40229363--40229468	44	2.4	42	83	9	124	80	0	19	0	0.72
40229830--40229874	19	2.4	18	82	10	56	26	17	8	46	1.78
40230014--40230055	21	2.1	21	86	8	61	52	16	4	26	1.63
40230047--40230212	17	9.5	17	76	15	126	30	12	9	48	1.72
40230046--40230212	18	9.6	18	75	13	152	29	11	9	48	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40230071--40230212	35	4.2	33	82	5	160	31	11	9	47	1.72
40230173--40230301	36	3.4	37	70	16	95	36	10	11	41	1.75
40241977--40242202	121	1.9	119	82	7	285	31	14	20	33	1.92
40241909--40242711	190	4.2	191	95	2	1427	30	13	20	34	1.92
40242167--40242392	121	1.9	121	84	3	303	30	14	21	34	1.93
40242730--40242763	16	2.1	17	88	5	52	17	11	5	64	1.45
40242669--40242927	91	2.9	88	81	10	300	26	18	18	37	1.93
40242914--40242947	15	2.5	13	82	17	50	11	8	8	70	1.34
40242919--40242947	15	1.9	15	100	0	58	13	6	6	72	1.26
40243024--40243239	54	4.1	55	85	10	297	28	16	17	37	1.91
40243032--40243239	104	2.0	103	88	5	312	28	15	18	37	1.92
40243480--40243514	14	2.4	15	90	4	54	71	2	0	25	1.00
40243510--40243611	30	3.4	30	83	2	125	30	22	2	44	1.68
40243874--40243923	10	5.2	10	80	7	59	70	0	30	0	0.88
40243877--40243919	19	2.3	19	88	11	63	69	0	30	0	0.88
40243989--40244029	3	13.3	3	94	5	73	68	0	31	0	0.90
40244148--40244222	31	2.3	33	84	9	91	72	20	6	1	1.15
40244214--40244264	25	2.0	24	81	11	57	66	13	19	0	1.24
40244315--40244412	15	6.5	15	81	8	110	80	0	19	0	0.71
40244313--40244412	22	4.4	23	76	15	102	80	0	20	0	0.72
40244313--40244408	26	3.7	26	76	16	94	80	0	19	0	0.72
40244313--40244408	8	12.0	8	76	12	99	80	0	19	0	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40244768--40244812	19	2.4	18	82	10	56	26	17	8	46	1.78
40244990--40245151	17	9.4	17	77	10	150	29	12	10	47	1.74
40245011--40245150	35	4.1	35	81	5	164	29	12	10	47	1.74
40245001--40245151	52	2.9	50	81	14	148	28	12	11	47	1.76
40249580--40249751	9	18.2	10	67	16	55	62	1	3	31	1.22
40249580--40249751	19	9.1	19	67	16	81	62	1	3	31	1.22
40249581--40249713	38	3.6	36	76	9	124	63	1	3	31	1.21
40249488--40249713	9	24.6	9	66	18	67	62	3	3	30	1.29
40249673--40249750	28	2.8	27	76	16	70	62	2	2	32	1.22
40250241--40250315	29	2.6	28	79	8	71	34	2	5	57	1.35
40259095--40259132	5	7.6	5	100	0	76	81	0	0	18	0.69
40263552--40263583	5	6.6	5	92	7	57	81	0	0	18	0.70
40263553--40263583	9	3.3	9	95	4	53	80	0	0	19	0.71
40264681--40264779	51	1.9	51	100	0	198	31	17	13	38	1.88
40269138--40269206	36	1.9	36	84	0	93	59	4	4	31	1.37
40269283--40269328	23	2.0	24	86	4	67	58	6	6	28	1.48
40269493--40269560	25	2.7	25	81	6	75	63	4	4	27	1.33
40269449--40269559	26	4.1	26	76	11	73	61	3	8	27	1.41
40270353--40270419	24	2.7	25	75	20	68	74	4	16	4	1.14
40276426--40276459	17	2.0	17	100	0	68	17	23	11	47	1.81
40280083--40280172	38	2.4	36	81	13	103	45	1	1	52	1.15
40280082--40280208	49	2.6	48	84	2	146	43	1	3	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40297884--40297986	43	2.3	45	75	6	104	27	26	17	29	1.98
40304397--40304641	50	4.9	50	74	8	165	26	18	23	31	1.97
40304838--40304867	16	1.9	15	93	6	51	43	0	23	33	1.54
40308438--40308616	46	3.8	46	80	12	161	26	18	32	22	1.97
40308437--40308756	46	6.7	50	75	15	157	27	17	30	24	1.97
40311486--40311707	40	5.6	40	94	1	376	27	26	22	22	1.99
40319694--40319877	40	4.6	40	91	2	291	27	25	23	23	2.00
40324215--40324248	6	5.7	6	92	0	59	82	0	2	14	0.79
40325658--40325710	28	1.9	27	88	3	79	56	13	5	24	1.58
40334991--40335211	40	5.6	40	91	2	322	21	27	23	27	1.99
40344779--40345156	27	14.0	27	83	3	422	35	18	20	25	1.95
40345569--40345626	19	3.4	19	65	30	58	18	17	17	46	1.84
40345558--40345708	6	24.3	6	68	18	87	19	17	14	47	1.82
40345558--40345699	31	4.5	31	92	0	212	19	18	14	47	1.82
40348204--40348562	47	7.6	47	73	11	245	23	29	18	28	1.98
40348204--40348558	141	2.5	140	79	7	353	23	29	18	28	1.98
40348204--40348562	94	3.8	93	78	9	345	23	29	18	28	1.98
40350443--40350507	28	2.3	28	94	0	112	41	23	18	16	1.90
40381784--40381844	26	2.3	27	86	11	90	36	27	8	27	1.85
40381952--40382060	27	4.0	26	83	4	110	22	22	19	36	1.95
40381954--40382062	54	2.0	54	85	7	150	22	22	19	35	1.96
40390762--40390830	34	2.0	34	100	0	138	40	23	2	33	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40401191--40401260	34	2.1	34	97	0	131	38	30	15	15	1.89
40406584--40406634	17	2.9	17	80	13	59	68	3	0	27	1.07
40406582--40406634	8	6.2	8	77	12	52	66	3	0	30	1.10
40406577--40406637	18	3.4	18	71	13	54	65	3	0	31	1.09
40407647--40407680	16	2.1	17	88	5	52	55	2	2	38	1.30
40408104--40408170	33	2.0	33	100	0	134	41	8	8	40	1.68
40415234--40415273	17	2.4	16	84	12	53	57	5	5	32	1.42
40419961--40420022	26	2.3	26	83	5	70	33	27	11	27	1.91
40420130--40420237	27	4.0	26	82	5	117	17	23	20	38	1.93
40420127--40420235	54	2.0	53	83	1	137	16	23	20	39	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290