genome.fa.s7.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  111  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34478650--34478721	37	1.9	37	91	0	117	23	19	29	27	1.98
34479924--34480155	40	5.8	40	87	0	311	25	22	26	25	2.00
34480331--34480381	25	2.0	25	85	7	68	29	7	33	29	1.85
34484037--34484183	47	3.1	47	86	0	195	32	10	29	27	1.90
34484066--34484139	23	3.1	25	62	25	59	29	13	33	22	1.93
34484154--34484337	98	1.9	96	91	4	298	36	6	26	30	1.82
34484153--34484337	48	3.8	48	88	5	291	36	6	25	31	1.82
34484483--34484664	37	4.9	37	95	1	321	22	19	30	27	1.98
34484483--34484664	73	2.5	74	93	1	321	22	19	30	27	1.98
34492048--34492088	20	2.0	20	85	4	55	46	12	7	34	1.69
34492869--34493030	43	3.8	42	74	8	132	32	25	15	27	1.95
34494845--34495015	43	4.0	43	76	7	150	32	23	16	26	1.96
34495503--34495557	28	1.9	29	82	10	69	29	23	1	45	1.63
34500269--34500429	46	3.5	44	77	13	137	28	18	29	23	1.98
34500552--34500609	28	2.1	28	96	0	107	39	12	6	41	1.69
34501600--34501640	22	1.9	22	90	5	66	9	41	29	19	1.83
34502792--34502830	21	1.9	20	89	5	60	48	5	2	43	1.38
34502786--34502845	19	3.0	20	79	9	61	53	5	1	40	1.33
34502856--34502896	18	2.2	18	86	4	55	39	2	2	56	1.26
34511350--34511379	14	2.1	15	93	6	53	56	13	10	20	1.65
34518411--34518474	31	2.1	31	93	0	110	23	23	15	37	1.93
34518668--34518762	24	4.0	24	84	6	122	29	22	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34518668--34518761	23	4.0	23	84	8	118	29	22	21	26	1.99
34518812--34518878	20	3.3	20	93	0	116	32	20	11	34	1.90
34518812--34518867	11	5.5	11	71	16	57	32	19	12	35	1.89
34518915--34518962	25	1.9	25	86	0	69	25	16	25	33	1.96
34537776--34537832	29	2.0	28	83	12	73	33	5	26	35	1.79
34538238--34538398	42	3.7	43	78	12	170	28	19	24	27	1.98
34538238--34538398	44	3.8	41	79	9	162	28	19	24	27	1.98
34546547--34546598	27	2.0	26	88	3	77	38	19	25	17	1.93
34549326--34549386	30	2.0	30	96	0	113	27	27	13	31	1.94
34550770--34550870	47	2.1	48	81	5	116	34	18	23	22	1.96
34557418--34557694	48	5.8	48	84	4	301	31	18	24	25	1.97
34557418--34557694	144	1.9	144	85	2	387	31	18	24	25	1.97
34562652--34562752	43	2.3	43	84	3	114	34	25	14	24	1.94
34572847--34572912	27	2.4	27	87	0	87	42	16	16	24	1.88
34573294--34573359	33	2.0	33	84	0	87	27	21	25	25	1.99
34576099--34576264	43	3.9	43	74	11	126	28	13	25	32	1.94
34585436--34585489	23	2.3	23	100	0	108	53	18	0	27	1.45
34589306--34589445	25	5.6	26	73	7	87	34	25	17	22	1.96
34593401--34593512	27	4.1	27	75	12	86	38	22	23	16	1.93
34593401--34593512	54	2.1	54	81	3	127	38	22	23	16	1.93
34594943--34595015	24	3.0	24	93	0	119	21	39	5	32	1.77
34597227--34597263	18	2.1	18	94	0	65	48	10	5	35	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34598618--34598661	20	2.2	20	87	0	61	31	22	31	13	1.93
34598693--34598767	22	3.5	22	80	3	82	33	21	24	21	1.97
34601657--34601901	49	4.9	49	83	2	274	26	17	27	28	1.97
34601656--34601896	99	2.4	101	82	3	292	25	17	27	29	1.97
34603765--34603834	25	2.8	25	95	0	122	25	22	25	25	2.00
34604087--34604371	27	10.6	27	88	2	358	30	7	20	41	1.80
34604081--34604398	81	3.9	81	86	2	379	30	7	20	40	1.81
34604087--34604750	27	24.6	27	85	2	332	35	8	21	34	1.83
34604362--34604736	54	6.9	54	86	1	432	39	8	22	29	1.84
34604362--34604736	81	4.6	81	89	0	482	39	8	22	29	1.84
34605032--34605137	26	4.1	26	91	0	176	33	7	23	35	1.83
34610364--34610428	15	4.4	15	76	16	64	9	10	13	66	1.45
34610359--34610428	30	2.4	30	79	15	83	8	10	17	64	1.48
34612549--34612786	49	4.8	49	86	2	314	26	17	26	29	1.97
34615763--34615869	49	2.2	49	88	3	153	25	27	25	22	2.00
34628846--34628994	20	7.3	20	69	4	75	34	21	30	13	1.92
34628902--34629260	40	9.0	40	81	1	416	33	18	30	17	1.94
34628939--34629260	120	2.7	120	94	1	542	33	17	30	18	1.94
34631582--34631671	45	2.0	44	97	2	171	41	13	11	34	1.80
34638994--34639098	27	3.9	26	80	7	111	18	22	20	38	1.94
34638994--34639105	54	2.1	54	83	3	136	17	22	21	38	1.93
34645332--34645405	24	3.1	24	96	0	130	31	4	41	22	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34645338--34645401	12	5.3	12	67	14	51	29	4	39	26	1.76
34646836--34646941	27	3.9	26	80	7	113	17	22	21	37	1.94
34646836--34646945	54	2.0	54	84	3	141	17	22	20	39	1.93
34649640--34649709	22	3.3	21	78	9	81	37	18	25	18	1.94
34650346--34650379	13	2.6	14	90	9	54	5	47	23	23	1.73
34650413--34650492	40	2.0	41	82	9	101	17	37	22	22	1.94
34651498--34651623	47	2.7	46	83	11	159	23	30	18	27	1.98
34663084--34663191	26	4.2	26	89	4	155	37	23	6	32	1.80
34663084--34663191	52	2.1	52	92	0	180	37	23	6	32	1.80
34663630--34663800	43	4.0	43	91	0	261	29	31	18	21	1.96
34664426--34665084	23	28.8	23	75	9	411	39	22	5	33	1.76
34664426--34664863	160	2.7	160	83	8	477	38	23	5	32	1.77
34664438--34664887	183	2.5	183	95	0	783	38	22	5	33	1.77
34664598--34665084	229	2.1	228	89	3	746	39	22	4	33	1.75
34666280--34666313	10	3.4	10	100	0	68	44	11	0	44	1.40
34668810--34668940	40	3.2	40	84	5	156	23	21	22	32	1.98
34676351--34676414	23	2.7	23	82	2	74	34	12	12	40	1.81
34678402--34678463	26	2.5	26	81	5	74	22	12	1	62	1.38
34690969--34691307	43	7.7	43	66	17	160	30	20	22	26	1.98
34690946--34691418	133	3.6	133	95	1	815	29	21	22	26	1.99
34691578--34691749	45	3.8	45	86	3	240	32	20	22	25	1.98
34691578--34691746	90	1.9	89	91	3	277	31	20	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34691713--34691883	88	2.0	88	88	3	256	31	22	16	29	1.96
34691578--34691855	45	6.3	44	76	9	214	32	21	19	26	1.97
34693198--34693259	26	2.5	26	76	10	67	22	11	1	64	1.34
34700292--34700321	4	7.2	4	92	7	51	50	3	0	46	1.18
34710063--34710161	30	3.3	30	88	0	153	18	5	48	28	1.69
34710811--34711405	87	6.7	88	79	9	464	36	18	16	27	1.93
34711044--34711405	180	2.0	178	83	6	455	37	18	17	27	1.93
34711209--34711241	14	2.4	14	94	0	57	63	6	12	18	1.48
34711318--34711753	148	3.0	146	95	1	791	32	20	16	30	1.95
34711867--34712605	73	9.3	73	70	17	363	33	20	17	28	1.95
34711779--34712842	237	4.3	235	77	15	915	34	20	16	28	1.95
34712252--34712286	14	2.5	14	95	0	61	57	2	20	20	1.54
34711940--34712848	164	5.5	162	78	9	925	34	19	16	29	1.94
34712178--34712842	75	7.9	83	73	14	437	34	19	16	29	1.94
34711228--34712838	498	3.3	481	78	12	1445	34	20	16	28	1.95
34711352--34712842	409	3.7	398	74	17	930	33	20	16	29	1.94
34712752--34712782	14	2.2	14	94	0	53	58	6	12	22	1.58
34715769--34715807	18	2.2	17	86	13	53	33	0	20	46	1.51
34715913--34715941	8	3.6	8	100	0	58	24	13	27	34	1.93
34716028--34716104	23	3.3	23	92	3	136	20	20	25	32	1.97
34723096--34723134	18	2.2	17	86	13	53	33	0	20	46	1.51
34723239--34723267	8	3.6	8	100	0	58	24	13	27	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34723353--34723428	23	3.3	23	96	0	143	21	21	26	31	1.98
34729535--34729594	23	2.9	20	70	15	59	56	5	6	31	1.47
34729550--34729696	48	3.0	48	77	12	129	55	4	7	31	1.48
34729650--34729708	25	2.4	25	77	11	68	54	1	6	37	1.37
34729738--34729783	25	1.9	25	86	8	69	60	0	4	34	1.16
34729828--34729862	18	1.9	18	88	11	54	11	51	28	8	1.67
34730259--34730357	30	3.3	30	88	0	153	18	7	47	27	1.74
34731048--34731557	91	5.7	88	79	11	422	35	19	16	28	1.93
34731382--34731414	14	2.4	14	94	0	57	63	6	12	18	1.48
34731038--34732726	146	10.0	177	73	18	639	36	19	16	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290