genome.fa.s7.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  121  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37883029--37883352	170	1.9	173	92	3	548	29	14	24	31	1.95
37888783--37888918	56	2.4	56	88	1	202	31	25	15	27	1.96
37891802--37891845	19	2.4	19	85	7	56	50	0	9	40	1.34
37898841--37898869	15	1.9	15	100	0	58	41	0	0	58	0.98
37900776--37900847	37	1.9	37	94	0	126	27	30	19	22	1.98
37900988--37901579	146	4.0	145	93	3	936	31	27	6	35	1.82
37900988--37901579	48	12.0	48	92	5	932	31	27	6	35	1.82
37901385--37901579	106	1.8	106	97	0	372	31	26	6	35	1.82
37907848--37907920	34	2.1	34	87	5	103	27	23	21	27	1.99
37913488--37913525	17	2.2	17	100	0	76	15	5	10	68	1.36
37914332--37914416	43	2.0	43	88	0	125	22	16	31	29	1.96
37916244--37916277	16	2.1	16	100	0	68	44	17	11	26	1.83
37933026--37933065	19	2.0	20	90	4	64	40	0	15	45	1.46
37934510--37934565	11	5.2	11	71	4	51	35	17	16	30	1.92
37940865--37940960	29	3.3	29	85	1	131	29	29	14	27	1.95
37941018--37941052	18	2.0	18	88	5	54	20	42	22	14	1.88
37945382--37945506	29	4.3	29	91	1	198	29	30	14	25	1.95
37945565--37945598	18	1.9	18	88	5	52	17	44	23	14	1.86
37949574--37949661	29	3.2	29	75	18	114	28	29	2	39	1.69
37949565--37949646	25	3.2	24	75	18	92	28	29	4	37	1.78
37952597--37952629	13	2.6	13	95	4	59	30	0	15	54	1.41
37958068--37958106	6	6.5	6	96	0	69	15	2	0	82	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37958073--37958129	18	3.1	18	84	5	60	21	3	3	71	1.15
37961023--37961049	13	2.1	13	100	0	54	33	0	14	51	1.43
37962755--37962978	47	4.7	48	77	10	207	24	28	19	28	1.99
37965170--37965221	20	2.6	20	96	0	95	19	34	32	13	1.90
37967366--37967541	27	6.5	27	83	3	201	27	14	27	30	1.95
37967367--37967522	82	1.9	81	88	3	233	26	15	28	29	1.96
37967363--37967541	82	2.2	81	82	3	225	27	15	27	30	1.96
37976897--37976933	14	2.8	13	88	11	58	62	8	5	24	1.44
37977292--37977344	13	4.1	13	90	0	79	18	35	28	16	1.93
37977292--37977344	26	2.0	26	92	0	88	18	35	28	16	1.93
37978397--37978464	24	2.8	24	86	0	100	39	11	22	26	1.88
37978448--37978535	46	1.9	46	86	6	126	31	19	22	26	1.98
37978374--37978534	24	6.8	22	68	16	58	34	16	21	26	1.95
37979968--37979999	2	16.0	2	100	0	64	50	50	0	0	1.00
37981137--37981208	31	2.4	30	93	4	126	47	12	5	34	1.65
37993846--37994107	77	3.3	77	81	9	273	25	22	27	24	2.00
37993846--37994105	40	6.6	39	82	8	242	25	22	27	24	2.00
37993899--37994140	79	3.1	80	82	7	205	26	22	28	23	1.99
38001791--38002009	40	5.7	37	78	14	180	24	20	29	25	1.99
38001844--38002044	39	5.3	38	82	10	218	24	20	29	25	1.99
38001791--38002044	110	2.2	116	79	12	276	24	20	28	25	1.99
38001907--38002050	75	1.9	75	82	5	173	24	20	29	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38006932--38007109	27	6.6	27	84	3	205	29	28	15	26	1.96
38006953--38007108	82	1.9	81	88	3	233	29	28	15	26	1.96
38009806--38009857	20	2.6	20	93	0	95	23	32	28	15	1.95
38017140--38017194	29	1.9	29	89	10	87	65	10	0	23	1.24
38017491--38017542	17	3.4	17	70	25	60	36	0	9	53	1.34
38017483--38017555	29	2.2	33	72	25	82	38	0	8	53	1.31
38017492--38017560	29	2.4	29	95	0	120	39	0	7	53	1.29
38017500--38017549	14	3.5	14	70	24	50	42	0	8	50	1.32
38026775--38026828	22	2.5	22	100	0	108	35	24	20	20	1.96
38037974--38038183	44	4.8	44	82	11	204	25	20	30	23	1.99
38038077--38038183	41	2.6	41	83	8	119	28	20	28	21	1.98
38038670--38038702	16	1.9	18	88	11	52	24	15	12	48	1.78
38039418--38039494	17	4.6	17	71	18	63	68	1	25	3	1.14
38039447--38039519	25	3.0	23	78	11	67	67	1	27	4	1.17
38039485--38039527	20	2.2	20	83	8	52	67	0	27	4	1.10
38039610--38039674	21	3.0	21	73	13	60	32	0	1	66	1.01
38039645--38039731	33	2.6	33	77	13	81	32	4	1	62	1.23
38062260--38062290	16	1.9	16	93	0	53	51	16	19	12	1.76
38064983--38065206	39	5.7	40	81	7	224	25	28	20	25	1.99
38064983--38065207	79	2.8	76	80	7	234	25	28	20	25	1.99
38065138--38065215	40	1.9	41	82	10	97	26	28	20	24	1.99
38072480--38072703	40	5.7	40	82	7	233	25	28	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38072480--38072704	79	2.8	78	80	6	247	25	28	20	25	1.99
38072635--38072712	40	1.9	41	82	10	97	26	28	20	24	1.99
38077428--38077499	29	2.5	29	88	0	99	27	20	26	25	1.99
38079177--38079348	67	2.6	66	81	7	179	31	17	28	22	1.96
38079132--38079384	68	3.9	64	77	11	203	29	16	29	24	1.97
38082114--38082148	17	2.0	18	88	5	54	37	22	14	25	1.92
38083946--38084033	6	14.3	6	73	17	74	48	15	17	18	1.81
38083957--38084029	37	2.0	37	91	0	119	49	16	16	17	1.80
38083930--38084033	31	3.4	29	79	13	111	50	15	15	18	1.77
38084152--38084211	27	2.3	26	82	2	66	36	20	20	23	1.95
38084179--38084320	67	2.1	67	84	5	176	30	21	28	19	1.97
38084250--38084301	27	2.0	26	84	3	68	34	21	26	17	1.95
38084547--38084823	27	10.3	27	82	1	304	28	20	16	34	1.95
38084548--38084823	54	5.1	54	88	3	360	28	20	16	34	1.94
38084617--38084869	81	3.1	81	82	5	228	28	17	18	35	1.94
38084805--38084878	27	2.7	27	97	0	139	27	6	24	41	1.79
38086785--38086848	23	2.8	23	90	0	101	28	20	15	35	1.93
38087085--38087208	57	2.2	57	89	1	185	33	9	19	37	1.84
38087114--38087207	18	5.0	18	72	8	71	32	10	19	37	1.86
38088975--38089035	30	2.0	30	100	0	122	22	13	22	40	1.89
38101215--38101257	19	2.3	18	88	4	59	23	34	27	13	1.93
38108860--38108924	34	1.9	34	83	0	85	27	23	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38128395--38128419	13	1.9	13	100	0	50	44	0	8	48	1.32
38128794--38128839	21	2.2	21	92	0	74	8	21	30	39	1.84
38131953--38132119	43	3.9	43	71	5	124	25	15	23	35	1.94
38139520--38139579	28	2.1	28	96	0	111	36	3	23	36	1.71
38145290--38145369	31	2.5	31	87	2	106	50	13	16	20	1.78
38145506--38145587	27	3.1	26	89	3	110	35	21	21	20	1.96
38145740--38145803	22	2.9	22	77	9	67	35	23	20	20	1.96
38146258--38146983	27	26.9	27	87	3	910	25	18	19	36	1.95
38146976--38147046	27	2.6	27	90	0	115	29	7	21	42	1.79
38148674--38148856	50	3.7	49	83	4	213	28	27	18	25	1.98
38148674--38148857	101	1.8	99	85	2	260	28	27	17	25	1.98
38150965--38151029	15	4.4	15	75	22	66	63	12	13	10	1.53
38154025--38154154	50	2.6	49	87	3	181	29	30	16	23	1.97
38164699--38164727	12	2.4	12	100	0	58	41	17	0	41	1.49
38168938--38169023	45	1.9	45	87	0	127	36	25	13	24	1.93
38171590--38171636	18	2.6	18	93	0	85	34	29	10	25	1.90
38174776--38174853	41	1.9	41	94	0	138	42	10	28	19	1.83
38176583--38176718	43	3.2	42	81	5	130	24	16	25	33	1.95
38182519--38182662	70	2.1	70	94	2	254	30	28	8	32	1.86
38183590--38183622	13	2.6	13	90	4	50	48	12	0	39	1.40
38191578--38191610	13	2.6	13	90	4	50	48	12	0	39	1.40
38193132--38193306	40	4.4	40	93	0	305	29	28	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38195890--38195971	40	2.0	40	92	0	137	19	10	36	32	1.87
38196762--38196951	27	7.1	27	87	0	247	35	18	21	24	1.96
38197256--38197326	33	2.2	33	94	0	124	26	22	26	23	2.00
38198527--38198687	43	3.8	42	75	12	125	32	20	19	27	1.97
38200173--38200240	34	2.0	34	100	0	136	44	8	14	32	1.76
38200331--38200372	20	2.1	20	86	8	59	40	0	16	42	1.48
38200533--38200613	23	3.6	23	88	6	121	14	27	22	35	1.93
38203303--38203347	21	2.2	20	88	7	65	24	13	33	28	1.93
38207546--38207576	16	1.9	16	93	0	53	45	12	22	19	1.84
38207792--38207830	21	1.9	21	89	5	62	25	12	30	30	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290