genome.fa.s7.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  215  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69869383--69869420	19	2.1	18	90	5	58	5	21	34	39	1.76
69869758--69869839	27	3.1	27	83	1	94	20	21	20	36	1.95
69869774--69869875	26	3.9	26	78	1	96	21	19	19	39	1.93
69869827--69869881	26	2.1	26	89	0	83	23	18	21	36	1.95
69869980--69870043	33	1.9	33	87	6	94	17	25	23	34	1.96
69879860--69880029	46	3.7	46	74	4	162	32	28	17	21	1.96
69884330--69884381	27	2.0	26	84	3	68	17	26	21	34	1.95
69884397--69884458	31	2.0	32	87	3	90	20	24	19	35	1.96
69884420--69884479	27	2.3	26	82	2	66	25	23	16	35	1.95
69886083--69886172	46	2.0	46	100	0	180	31	21	12	35	1.90
69896839--69896984	54	2.7	54	87	2	195	35	19	19	25	1.95
69896839--69896983	27	5.4	27	82	4	177	35	19	20	25	1.96
69897614--69897789	67	2.6	67	90	3	266	19	29	20	30	1.97
69897700--69897751	27	2.0	26	84	3	68	17	26	21	34	1.95
69901069--69901152	29	2.9	29	89	1	116	26	15	30	27	1.96
69903999--69904027	14	2.0	15	93	6	51	27	0	20	51	1.47
69912284--69912316	15	2.2	16	89	10	52	24	6	18	51	1.68
69916092--69916168	33	2.3	33	93	0	127	24	22	23	29	1.99
69916432--69916480	17	2.8	18	75	6	55	38	20	14	26	1.91
69923885--69923956	32	2.2	33	92	2	119	23	19	25	31	1.98
69924220--69924268	17	2.8	18	75	6	55	38	20	14	26	1.91
69928224--69928408	40	4.7	40	78	6	189	24	26	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69943769--69943852	31	2.7	31	94	1	143	27	26	17	28	1.98
69943876--69943967	42	2.2	42	92	0	148	32	20	14	32	1.92
69944102--69944159	25	2.4	24	80	11	73	27	22	18	31	1.97
69944088--69944159	25	3.0	23	78	10	72	29	22	19	29	1.98
69944995--69945059	27	2.4	27	82	5	78	21	24	18	35	1.96
69945093--69945290	110	1.8	108	82	4	254	30	9	19	40	1.83
69945091--69945299	27	7.7	27	73	4	125	31	8	20	40	1.82
69945177--69945332	81	1.9	81	81	5	190	29	10	19	41	1.84
69945093--69945290	54	3.6	54	75	5	155	30	9	19	40	1.83
69945331--69945528	81	2.4	81	88	3	274	39	6	24	29	1.80
69945331--69945528	27	7.3	27	86	2	245	39	6	24	29	1.80
69947483--69947633	41	3.5	41	81	8	151	29	27	18	24	1.98
69947511--69947644	45	3.1	43	81	9	148	32	27	17	23	1.96
69955731--69955777	20	2.3	20	85	0	67	29	36	12	21	1.91
69957276--69957303	13	2.2	13	100	0	56	78	7	0	14	0.95
69964404--69964594	27	7.1	27	77	10	144	35	18	13	32	1.90
69964409--69964591	81	2.3	81	79	3	190	36	18	13	32	1.89
69964405--69964591	54	3.5	54	79	7	193	35	18	13	32	1.89
69967416--69967491	40	1.9	40	86	0	107	32	28	17	21	1.95
69971012--69971350	42	7.7	41	75	15	245	29	26	16	27	1.97
69971031--69971350	84	3.6	89	81	8	292	29	26	16	27	1.97
69971141--69971327	48	3.9	48	91	2	297	27	24	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69971322--69971424	37	2.8	37	92	5	165	25	30	18	26	1.98
69972783--69972976	27	7.2	27	88	0	253	29	24	6	39	1.81
69972783--69972976	81	2.4	81	89	0	280	29	24	6	39	1.81
69973012--69973189	27	6.6	27	74	8	139	38	21	9	30	1.85
69973012--69973189	54	3.3	54	77	4	155	38	21	9	30	1.85
69973991--69974071	20	4.1	20	91	3	128	40	9	18	30	1.83
69974106--69974241	25	5.3	26	82	6	165	28	21	22	27	1.99
69974106--69974235	51	2.5	53	87	7	189	29	21	21	27	1.99
69977312--69977609	48	6.2	48	96	0	506	35	6	26	31	1.81
69978684--69978798	31	3.7	31	92	1	187	29	17	25	27	1.97
69983257--69983327	28	2.5	28	79	0	79	32	25	11	30	1.91
69986782--69986900	43	2.8	44	82	3	154	24	17	26	31	1.97
69987741--69987766	13	2.0	13	100	0	52	7	0	30	61	1.24
69989442--69989495	27	2.0	27	96	0	99	31	16	18	33	1.93
70009204--70009262	29	2.1	28	84	6	75	44	1	25	28	1.64
70009745--70009846	43	2.4	43	80	6	109	32	15	20	31	1.94
70009909--70010160	123	2.0	123	95	0	450	35	14	21	28	1.93
70013328--70013376	24	2.0	24	100	0	98	26	12	32	28	1.92
70018774--70018964	50	3.8	49	78	4	177	28	25	17	27	1.98
70024976--70025195	46	4.7	45	78	9	203	27	20	29	22	1.99
70024976--70025195	94	2.3	94	80	7	243	27	20	29	22	1.99
70029138--70029349	40	5.3	40	80	2	248	24	20	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70029142--70029358	80	2.7	79	88	3	310	24	21	27	26	1.99
70031391--70031540	75	2.0	74	94	1	264	29	12	19	38	1.89
70036041--70036201	46	3.4	47	77	12	161	27	19	28	24	1.98
70041522--70041642	42	2.8	42	79	10	122	33	25	18	23	1.97
70047718--70047847	47	2.8	47	87	0	170	22	16	28	32	1.96
70051254--70051415	40	4.1	39	80	6	155	32	16	27	24	1.96
70051254--70051415	80	2.0	80	83	2	200	32	16	27	24	1.96
70059699--70059816	58	2.0	58	96	0	218	35	9	10	44	1.70
70060893--70060941	22	2.2	23	85	3	64	44	20	0	34	1.52
70063254--70063302	20	2.5	20	86	6	64	63	6	4	26	1.36
70064186--70064220	3	11.7	3	100	0	70	68	0	31	0	0.90
70066209--70066422	40	5.4	40	89	3	308	23	21	26	27	1.99
70067898--70067940	19	2.2	20	84	12	54	39	0	2	58	1.11
70068021--70068066	24	2.0	23	86	4	65	23	0	6	69	1.11
70068338--70068581	121	2.0	122	91	4	393	45	9	16	29	1.79
70078744--70078768	11	2.3	11	100	0	50	52	0	40	8	1.31
70092348--70092417	29	2.4	29	77	17	74	38	10	7	44	1.65
70094172--70094204	17	1.9	18	88	11	52	45	0	12	42	1.41
70102632--70102675	19	2.4	18	85	7	54	40	9	0	50	1.34
70104592--70104632	20	2.0	20	100	0	82	26	9	24	39	1.86
70106178--70106253	29	2.6	29	89	0	116	39	15	21	23	1.92
70106174--70106291	29	4.2	28	80	3	103	33	17	22	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70106323--70106553	27	8.5	26	68	16	121	36	15	22	25	1.94
70106323--70106466	54	2.6	54	90	1	225	38	18	20	23	1.93
70106323--70106519	54	3.6	55	83	8	190	38	16	21	24	1.93
70106376--70106547	54	3.2	55	80	4	136	36	14	23	25	1.93
70118118--70118239	43	2.9	42	79	7	129	29	22	13	34	1.92
70120574--70120831	137	1.9	138	85	2	358	20	20	26	31	1.98
70124330--70124378	23	2.1	23	100	0	98	48	8	8	34	1.62
70125369--70125406	20	1.9	20	88	0	58	52	0	13	34	1.40
70125368--70125413	20	2.3	20	80	0	56	54	2	13	30	1.50
70126861--70126981	43	2.9	42	82	2	152	30	15	25	28	1.96
70134665--70134835	40	4.3	40	86	0	225	30	19	21	27	1.98
70135139--70135306	7	23.4	7	75	13	110	46	29	1	22	1.60
70135121--70135275	73	2.1	73	83	7	199	45	29	1	24	1.61
70135405--70135460	21	2.6	22	83	11	71	46	30	0	23	1.53
70135399--70135459	7	8.6	7	80	3	59	47	31	0	21	1.51
70137657--70137833	49	3.6	48	77	11	184	24	28	19	26	1.99
70137758--70137972	46	4.6	47	81	10	203	23	30	19	26	1.98
70139111--70139153	22	2.0	22	100	0	86	41	4	9	44	1.57
70139118--70139164	22	2.2	21	81	11	51	48	4	6	40	1.48
70139398--70139727	113	2.9	114	80	4	317	33	16	19	30	1.94
70149502--70149671	46	3.7	46	73	16	170	30	28	20	21	1.98
70149510--70149681	93	1.8	93	91	0	281	29	28	20	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70151233--70151271	14	2.8	14	100	0	78	58	7	7	25	1.52
70161997--70162329	47	7.1	47	92	1	533	32	8	30	28	1.87
70161999--70162329	93	3.5	93	93	2	520	32	8	30	28	1.87
70162447--70162525	37	2.1	37	90	0	122	24	18	31	25	1.98
70164401--70164565	40	4.2	39	83	8	183	28	20	25	25	1.99
70164349--70164532	79	2.3	81	80	10	218	26	21	26	25	2.00
70164348--70164539	40	4.8	40	85	7	205	26	21	26	25	1.99
70164401--70164565	79	2.1	79	83	6	201	28	20	25	25	1.99
70172274--70172498	40	5.7	40	87	5	280	25	21	26	26	2.00
70172274--70172531	119	2.2	119	81	6	283	26	21	26	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290