genome.fa.s7.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  132  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41556347--41556511	23	7.1	23	93	0	258	30	21	20	26	1.98
41556571--41556628	20	2.9	20	89	0	89	36	18	10	34	1.85
41562144--41562363	94	2.4	94	90	3	347	36	7	23	32	1.82
41564031--41564077	19	2.3	20	82	10	60	36	0	14	48	1.44
41564428--41564717	101	2.9	100	78	6	273	27	17	25	30	1.97
41564428--41564716	151	1.9	151	89	0	443	27	17	25	30	1.97
41564428--41564719	50	5.8	50	78	4	300	27	17	25	29	1.97
41564919--41564950	16	2.0	16	93	0	55	46	0	18	34	1.49
41565278--41565602	180	1.8	180	88	2	501	38	8	20	32	1.82
41568799--41569535	164	4.5	164	82	5	844	28	14	16	40	1.87
41570429--41571151	164	4.4	164	78	5	638	29	12	17	40	1.86
41570546--41571138	329	1.8	327	85	1	837	29	12	17	40	1.86
41571125--41571188	28	2.3	28	94	0	110	20	17	7	54	1.67
41572736--41572811	31	2.5	31	97	0	143	15	32	35	15	1.90
41575596--41575779	40	4.6	40	82	6	196	23	21	27	27	1.99
41575596--41575776	80	2.3	81	83	9	221	23	21	28	27	1.99
41575676--41575826	40	3.8	39	80	6	117	24	22	28	24	1.99
41578028--41578075	21	2.3	22	75	13	57	47	37	0	14	1.44
41578838--41578925	44	2.0	44	88	2	133	42	6	1	50	1.36
41581768--41582005	121	2.0	121	95	1	435	45	4	8	41	1.55
41583951--41583999	19	2.8	18	87	9	66	38	0	2	59	1.09
41583951--41583999	20	2.7	19	82	14	59	38	0	2	59	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41585341--41585404	28	2.2	29	80	5	85	14	10	1	73	1.17
41586589--41586640	24	2.2	24	85	0	68	48	5	34	11	1.63
41586595--41586668	24	3.1	24	88	0	94	45	5	35	13	1.66
41589710--41590501	141	5.7	140	80	7	798	27	17	23	31	1.97
41590157--41590393	126	1.9	126	85	1	332	26	17	23	32	1.96
41590522--41590603	7	11.9	7	74	7	51	21	1	28	48	1.58
41590522--41590601	14	5.8	14	72	8	65	21	1	27	50	1.57
41590514--41590601	21	4.2	20	79	4	68	20	1	28	50	1.56
41590514--41590580	27	2.4	28	85	9	84	19	1	29	49	1.57
41590528--41590592	34	1.9	34	84	6	87	18	1	29	50	1.56
41592062--41592118	16	3.6	16	95	0	87	29	0	36	33	1.58
41592364--41592398	18	2.0	17	88	5	52	54	0	0	45	0.99
41592498--41592539	15	2.7	16	82	14	52	52	2	0	45	1.13
41592251--41592548	154	1.9	156	95	2	546	44	3	5	47	1.41
41592507--41592641	15	8.9	15	67	24	70	51	3	2	42	1.32
41592290--41592605	154	2.0	155	83	7	401	46	4	3	45	1.39
41592567--41592657	44	2.1	43	81	6	103	53	3	2	40	1.29
41592547--41592765	120	1.8	119	88	6	336	50	6	3	39	1.46
41592731--41592764	17	2.0	17	94	0	59	50	0	5	44	1.26
41592797--41592989	92	2.1	91	88	4	282	46	4	4	45	1.41
41593356--41593393	14	2.6	14	95	4	67	31	7	28	31	1.86
41593968--41594035	34	2.0	34	100	0	136	29	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41594179--41594335	78	2.0	78	86	0	215	26	17	24	31	1.97
41596945--41596978	10	3.4	10	88	12	52	2	0	8	88	0.62
41607931--41607971	18	2.2	19	86	4	57	12	17	12	58	1.63
41612034--41612573	38	14.6	38	79	7	517	27	20	13	37	1.91
41611853--41612573	38	19.7	37	75	11	485	27	20	14	38	1.91
41611862--41612570	73	9.7	74	74	10	506	26	20	13	38	1.91
41611862--41612573	148	4.9	148	76	10	478	26	20	13	38	1.90
41612027--41612573	110	4.9	111	77	10	514	27	21	13	37	1.91
41613373--41613421	24	2.1	23	84	3	62	36	4	8	51	1.51
41615073--41615151	29	2.7	29	86	5	106	27	32	15	24	1.95
41623192--41623264	35	2.1	35	100	0	146	30	20	13	35	1.91
41626135--41626167	16	2.1	16	94	0	57	33	27	6	33	1.81
41628935--41628986	26	2.0	26	96	0	95	13	23	34	28	1.92
41628752--41629018	105	2.6	104	91	2	421	19	20	30	29	1.97
41631373--41631405	16	2.1	16	94	0	57	33	21	6	39	1.78
41633007--41633039	13	2.6	13	90	4	50	39	0	12	48	1.40
41638717--41639313	47	12.6	47	93	2	955	31	8	29	29	1.87
41638717--41639313	96	6.3	96	92	3	971	31	8	29	29	1.87
41645863--41645895	13	2.6	13	90	4	50	39	0	12	48	1.40
41646341--41646386	14	3.3	14	78	0	56	34	2	4	58	1.30
41647869--41647917	14	3.6	14	76	15	50	40	26	6	26	1.79
41651530--41651556	6	4.5	6	100	0	54	29	18	0	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41654412--41654440	5	5.8	5	100	0	58	82	17	0	0	0.66
41655058--41655103	22	2.1	22	95	0	83	26	23	6	43	1.78
41655091--41655166	37	2.1	37	94	0	134	42	14	17	26	1.87
41655328--41655356	14	2.0	15	93	6	51	41	0	0	58	0.98
41655648--41655707	25	2.4	25	88	5	86	30	0	15	55	1.41
41655713--41655983	103	2.9	90	85	11	295	23	0	14	60	1.39
41655794--41656117	111	3.0	109	90	4	466	25	0	14	59	1.41
41655788--41656212	214	2.1	198	84	9	559	25	0	14	59	1.40
41656015--41656195	92	2.0	93	90	4	289	28	1	16	54	1.49
41656451--41656503	21	2.5	22	78	3	54	32	3	7	56	1.45
41659839--41659873	14	2.6	13	86	8	52	2	22	0	74	0.95
41661197--41661418	49	4.6	49	87	4	299	44	10	10	34	1.74
41666513--41666626	28	4.0	28	79	2	113	28	14	29	28	1.95
41666906--41666961	27	2.1	27	83	6	69	48	19	14	17	1.81
41671023--41671126	28	3.7	28	81	2	120	26	14	30	27	1.95
41672641--41672680	20	2.0	20	90	0	62	37	5	2	55	1.35
41677294--41677340	22	2.1	22	100	0	94	36	4	23	36	1.75
41680748--41680972	47	4.8	47	76	10	189	24	27	18	30	1.98
41680745--41681005	140	1.9	141	83	5	350	24	27	19	29	1.98
41682798--41682846	25	2.0	25	84	8	64	53	2	2	42	1.24
41723375--41723517	43	3.3	43	75	7	137	41	19	16	21	1.90
41725502--41725645	56	2.6	56	92	2	227	25	15	23	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41733371--41733446	33	2.4	32	83	14	95	15	38	26	19	1.92
41734541--41734604	31	2.1	31	90	0	101	25	23	14	37	1.92
41734797--41734990	25	8.0	23	84	10	237	26	23	21	28	1.99
41735048--41735104	9	5.9	9	73	15	51	35	21	8	35	1.84
41735036--41735106	20	3.5	20	94	0	124	32	21	11	35	1.89
41735041--41735095	11	5.4	11	70	16	55	30	20	12	36	1.90
41736348--41736429	27	3.0	27	89	3	121	21	25	21	30	1.99
41736581--41736775	81	2.4	81	86	2	250	31	9	21	37	1.85
41736470--41736761	27	10.8	27	74	6	160	32	10	18	38	1.85
41736754--41736934	27	6.7	27	83	3	195	37	7	24	30	1.83
41736943--41737032	27	3.3	27	85	3	119	32	11	16	40	1.84
41736943--41737047	27	3.9	27	78	9	90	34	10	16	39	1.83
41743255--41743294	18	2.2	19	86	8	57	15	42	27	15	1.86
41749272--41749697	213	2.0	213	97	0	807	42	22	8	26	1.83
41749701--41749740	20	2.0	20	95	0	71	20	37	10	32	1.85
41752315--41752349	18	1.9	18	88	11	54	48	5	0	45	1.26
41756108--41756142	6	5.8	6	93	0	61	17	28	0	54	1.43
41761899--41761964	33	2.0	33	96	0	123	24	19	12	43	1.85
41767213--41767607	197	2.0	197	97	0	754	34	8	17	38	1.81
41767610--41767648	16	2.4	17	91	4	62	43	0	0	56	0.99
41769413--41769486	20	3.8	20	76	7	62	20	28	13	37	1.90
41772532--41772621	27	3.2	27	81	7	101	33	22	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41781138--41781353	40	5.5	40	86	7	275	25	28	23	22	1.99
41789245--41789462	40	5.5	40	83	4	239	27	27	22	23	1.99
41791251--41791548	47	6.4	47	89	0	402	34	8	29	27	1.87
41796476--41796566	27	3.3	27	81	4	101	30	18	26	24	1.98
41796487--41796576	27	3.2	27	77	13	94	31	22	24	22	1.99
41796683--41796750	29	2.4	28	87	2	100	32	7	26	33	1.84
41799166--41799219	29	1.9	29	85	7	76	38	3	27	29	1.74
41808185--41808261	29	2.7	29	93	0	127	27	29	18	24	1.98
41808480--41808529	16	3.1	16	79	0	55	22	20	14	44	1.86
41813307--41813342	18	1.9	19	88	5	56	13	36	27	22	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290