genome.fa.s7.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  194  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62342964--62343086	46	2.6	47	84	5	149	26	22	14	36	1.93
62372262--62372482	112	2.0	112	95	0	397	16	26	25	31	1.96
62375206--62375446	47	5.1	47	89	2	347	32	9	30	26	1.89
62375206--62375446	96	2.6	96	88	2	346	32	9	30	26	1.89
62375565--62375642	37	2.1	37	90	2	122	23	19	32	25	1.98
62377255--62377288	17	1.9	18	88	5	52	5	14	26	52	1.64
62393561--62393685	55	2.3	55	74	0	124	27	28	28	16	1.97
62395716--62395747	12	2.8	12	95	4	57	18	6	0	75	1.01
62402357--62402445	44	2.0	43	95	2	160	42	25	4	26	1.74
62404004--62404056	21	2.5	21	96	0	97	24	20	11	43	1.85
62406282--62406384	39	2.6	40	80	4	111	24	29	23	23	1.99
62406313--62406398	39	2.2	39	87	0	118	20	24	24	30	1.99
62413884--62413946	33	1.9	33	100	0	126	47	17	9	25	1.77
62414335--62414396	27	2.3	27	86	5	81	32	12	16	38	1.86
62417467--62417651	40	4.7	40	79	7	207	25	27	21	24	1.99
62425505--62425728	40	5.7	40	84	5	260	25	27	22	25	2.00
62425505--62425728	79	2.8	80	82	8	251	25	27	22	25	2.00
62425505--62425728	118	1.9	120	82	7	287	25	27	22	25	2.00
62428490--62428657	40	4.2	40	83	4	115	25	27	23	23	2.00
62428513--62428657	40	3.6	40	85	4	184	24	26	24	25	2.00
62435395--62435497	37	2.8	37	95	0	179	25	32	19	23	1.98
62435670--62436035	48	7.6	48	91	0	597	29	27	7	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62441960--62442087	42	3.0	42	71	17	111	21	14	28	35	1.93
62445027--62445204	48	3.7	48	89	3	277	26	26	19	28	1.99
62448077--62448192	44	2.5	46	84	6	148	25	30	18	25	1.98
62449892--62450049	86	1.8	86	90	0	253	26	13	21	38	1.90
62455053--62455200	67	2.2	67	83	8	176	33	17	27	21	1.96
62459405--62459565	46	3.5	46	75	14	177	28	27	21	22	1.99
62462107--62462278	79	2.2	80	91	3	276	25	21	27	25	1.99
62462054--62462278	119	1.9	120	84	6	305	25	22	27	25	2.00
62462054--62462278	40	5.7	40	84	5	287	25	22	27	25	2.00
62466894--62466948	25	2.2	25	100	0	110	32	18	14	34	1.91
62468802--62468875	29	2.6	29	86	4	96	25	16	31	27	1.96
62477156--62477229	29	2.6	29	86	4	96	25	16	31	27	1.96
62483374--62483509	68	2.0	68	97	0	254	35	13	19	31	1.90
62484749--62484816	28	2.4	29	83	9	79	25	16	30	27	1.96
62486325--62486441	58	2.0	58	96	3	218	27	7	20	44	1.78
62488185--62488245	30	2.1	29	90	3	95	36	19	16	27	1.93
62495290--62495442	37	4.1	37	93	3	245	26	33	18	21	1.96
62495561--62495767	47	4.4	47	92	0	333	28	30	8	32	1.87
62499025--62499064	21	1.9	21	84	0	53	27	10	25	37	1.88
62499569--62499687	28	4.2	28	86	0	157	27	14	32	25	1.94
62501892--62501924	16	2.1	16	100	0	66	24	0	24	51	1.48
62503122--62504020	453	2.0	453	91	0	1458	28	14	21	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62508279--62508574	50	5.9	50	75	3	227	26	17	24	31	1.97
62508330--62508511	101	1.8	101	84	2	249	28	18	22	30	1.97
62508283--62508568	151	1.9	153	85	2	398	26	17	24	32	1.97
62508772--62508801	16	1.9	15	93	6	51	43	0	23	33	1.54
62515862--62515914	23	2.4	22	76	20	56	9	18	1	69	1.25
62519307--62519488	28	6.5	28	92	1	276	33	26	12	28	1.92
62533510--62533539	14	2.1	14	100	0	60	43	6	20	30	1.77
62533971--62534598	27	23.7	27	81	8	623	38	19	9	32	1.84
62533970--62534625	53	12.4	53	87	3	775	38	19	9	32	1.84
62533970--62534545	158	3.6	158	90	1	877	38	19	10	31	1.85
62534103--62534665	27	21.1	27	78	9	150	39	19	9	30	1.85
62535126--62535151	11	2.4	11	100	0	52	26	0	19	53	1.45
62538334--62538363	14	2.1	14	100	0	60	43	6	20	30	1.77
62542524--62544328	901	2.0	901	98	0	3511	24	18	22	34	1.97
62544758--62545659	455	2.0	455	92	0	1493	28	16	20	34	1.95
62554837--62554961	43	2.9	43	86	2	144	31	26	16	25	1.97
62556475--62556868	134	2.9	135	88	0	601	24	23	21	30	1.99
62558300--62558353	22	2.5	21	72	3	54	18	35	29	16	1.93
62561124--62561240	27	4.3	27	83	0	135	23	21	17	36	1.94
62568163--62568426	119	2.2	121	84	6	335	25	21	28	24	1.99
62568163--62568426	40	6.7	40	84	5	322	25	21	28	24	1.99
62568216--62568424	79	2.6	79	93	2	348	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62573693--62573873	28	6.5	28	96	1	303	32	28	12	25	1.93
62573693--62573898	84	2.5	84	89	4	301	33	28	12	25	1.93
62581856--62582035	28	6.5	28	90	3	267	33	27	12	27	1.92
62583912--62584031	46	2.6	46	83	2	150	26	23	14	35	1.93
62585493--62585649	43	3.7	43	82	7	169	30	24	19	25	1.98
62594728--62594899	43	4.0	44	75	10	149	34	24	15	25	1.95
62596253--62596957	357	2.0	357	97	0	1329	27	12	24	34	1.92
62614736--62614781	12	3.8	12	78	18	51	41	0	4	54	1.20
62621801--62621948	26	5.8	26	89	1	212	27	22	23	27	1.99
62621998--62622092	20	4.8	20	92	5	151	36	18	8	35	1.82
62621998--62622085	9	8.7	11	75	17	84	36	19	9	35	1.83
62630132--62630253	26	4.8	26	91	2	187	27	23	22	26	2.00
62630132--62630253	51	2.4	51	93	4	203	27	23	22	26	2.00
62630365--62630437	25	2.9	25	91	0	110	28	16	21	32	1.95
62634718--62634827	56	1.9	57	87	5	161	25	13	28	32	1.94
62640994--62641182	50	3.8	51	80	4	188	25	16	25	32	1.96
62644130--62644332	40	5.1	40	88	3	277	25	28	23	22	1.99
62649840--62649876	20	1.9	18	89	10	56	54	5	2	37	1.38
62661603--62661644	22	1.9	22	90	0	66	30	9	21	38	1.85
62661728--62661757	15	2.0	15	93	0	51	3	13	0	83	0.77
62663830--62663962	69	1.9	70	89	1	205	33	14	15	36	1.88
62666670--62666792	28	4.4	28	90	2	176	34	27	11	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62673531--62673648	37	3.2	39	78	12	99	50	0	0	50	1.00
62673623--62673740	25	5.0	23	70	18	75	46	0	0	53	1.00
62673619--62673784	37	4.5	37	64	25	84	47	0	0	51	1.05
62673632--62673684	17	3.1	17	84	10	56	43	0	0	56	0.99
62673690--62673785	25	3.8	25	75	9	70	51	1	0	47	1.07
62673789--62673841	24	2.2	23	81	15	63	60	1	0	37	1.08
62673954--62674007	17	3.0	17	78	19	56	57	0	1	40	1.09
62673996--62674055	20	3.0	20	75	20	63	53	0	0	46	1.00
62674034--62674080	24	2.0	24	86	0	67	59	0	0	40	0.97
62674070--62674120	22	2.3	20	78	18	57	50	0	0	49	1.00
62673991--62674114	11	11.4	11	72	20	59	53	0	0	46	1.00
62674129--62674169	18	2.2	19	91	4	66	39	0	0	60	0.96
62674188--62674226	11	3.7	11	83	10	55	53	0	0	46	1.00
62674166--62674238	26	2.7	27	81	12	80	54	1	0	43	1.08
62674211--62674274	16	4.0	16	78	8	67	59	3	0	37	1.13
62674787--62675113	18	18.8	18	67	23	93	51	0	0	47	1.09
62674888--62675035	41	3.5	40	70	22	104	52	0	0	46	1.05
62674919--62675033	2	66.0	2	65	28	50	53	0	0	46	1.06
62674887--62675145	50	5.2	51	67	23	128	50	0	0	48	1.09
62674951--62675451	18	26.2	19	65	23	80	52	0	0	45	1.09
62674920--62678672	26	150.0	25	63	24	210	52	0	0	46	1.08
62674871--62675954	68	16.1	68	65	25	197	53	0	0	45	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62674967--62675102	17	8.2	17	71	23	80	47	0	0	50	1.11
62675074--62675135	23	2.7	24	75	12	67	48	0	0	51	1.00
62674779--62674946	37	4.7	38	65	27	61	52	0	0	46	1.04
62675105--62675452	21	14.7	23	65	25	72	54	0	0	44	1.08
62675243--62675365	5	25.2	5	70	17	53	52	0	0	47	1.00
62675280--62675415	21	7.0	21	76	13	105	58	0	0	41	0.98
62675317--62675456	2	78.5	2	65	21	71	55	0	0	45	0.99
62675074--62675383	164	1.9	169	81	11	390	53	0	0	45	1.09
62675307--62676025	57	12.2	59	65	25	130	54	0	0	44	1.07
62675489--62675543	27	2.0	27	82	6	67	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290