genome.fa.s7.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  103  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31779210--31779259	26	2.0	25	81	18	59	58	0	22	20	1.40
31781392--31781479	43	2.0	43	100	0	176	28	11	27	32	1.91
31781802--31781922	65	1.9	64	87	5	181	22	5	17	54	1.64
31783662--31783703	21	2.0	21	100	0	84	38	0	28	33	1.58
31784300--31784349	18	2.8	18	100	0	100	42	12	22	24	1.87
31788384--31788867	123	3.9	123	98	0	923	36	8	25	28	1.85
31797290--31797325	18	2.0	18	88	0	54	44	11	11	33	1.75
31798005--31798058	28	2.0	27	85	3	72	16	14	31	37	1.89
31798013--31798082	27	2.5	28	81	9	81	12	17	35	34	1.88
31800847--31800884	18	2.1	18	85	9	51	39	7	18	34	1.80
31825111--31825335	49	4.6	49	78	10	187	26	17	29	26	1.98
31825111--31825288	49	3.6	50	82	6	195	26	18	29	25	1.98
31839013--31839282	46	5.7	47	74	11	205	21	28	20	28	1.98
31839013--31839280	138	1.9	145	83	6	354	22	28	20	28	1.98
31855528--31855565	14	2.9	13	81	11	51	57	10	13	18	1.63
31856339--31856502	46	3.6	46	76	12	151	23	28	21	26	1.99
31857225--31857249	12	2.1	12	100	0	50	60	16	8	16	1.58
31862529--31862571	19	2.2	19	84	12	52	32	6	16	44	1.74
31863043--31863353	167	1.9	167	95	0	568	34	16	19	29	1.94
31869761--31869790	13	2.3	13	94	0	51	13	33	33	20	1.91
31872607--31872667	30	2.0	30	83	0	77	31	22	8	37	1.84
31883548--31883587	17	2.4	17	87	8	55	17	25	30	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31884487--31884528	20	2.2	20	86	4	59	35	19	4	40	1.72
31887463--31887545	41	2.0	41	97	0	157	40	13	21	24	1.89
31891245--31891273	15	1.9	15	100	0	58	27	20	17	34	1.95
31898814--31898860	23	2.0	23	95	0	85	36	8	19	36	1.82
31901410--31901542	55	2.4	54	73	1	131	36	18	23	21	1.95
31903900--31903934	17	2.0	18	88	5	54	22	42	22	11	1.85
31910886--31910986	38	2.6	38	87	6	132	24	23	24	26	2.00
31910924--31911005	38	2.2	38	88	4	121	23	21	21	32	1.98
31912843--31912928	27	3.2	26	83	8	100	40	23	22	13	1.89
31912868--31912954	27	3.2	27	83	8	95	34	25	22	17	1.96
31920712--31920813	27	3.7	27	75	12	93	36	19	25	18	1.95
31940639--31940774	26	5.3	26	84	3	172	28	22	21	27	1.99
31940639--31940774	52	2.7	51	89	5	206	28	22	21	27	1.99
31940824--31940879	11	5.5	11	71	16	57	32	19	10	37	1.86
31940824--31940898	40	1.9	38	84	10	98	33	18	10	37	1.86
31940824--31940880	20	2.8	20	97	0	105	33	19	10	36	1.86
31943113--31943439	48	6.8	48	72	9	211	24	26	19	29	1.98
31943109--31943430	96	3.4	95	79	6	301	23	26	18	30	1.98
31943161--31943443	144	2.0	144	85	2	390	24	26	18	30	1.98
31943256--31943443	48	3.9	47	81	5	216	26	29	16	27	1.97
31948981--31949204	40	5.6	40	84	4	204	26	26	23	24	2.00
31949015--31949204	40	4.7	40	84	3	238	25	26	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31948981--31949205	81	2.8	80	83	6	285	26	26	23	24	2.00
31952025--31952060	18	1.9	18	88	5	54	52	2	2	41	1.30
31959680--31959789	31	3.5	31	93	0	184	24	25	17	32	1.96
31959994--31960076	26	3.3	25	85	9	89	28	22	21	26	1.99
31960007--31960076	26	2.7	26	91	2	106	30	22	24	22	1.99
31971931--31972031	31	3.3	31	85	2	132	24	22	15	36	1.94
31972250--31972345	24	3.9	25	84	4	115	22	22	25	29	1.99
31972392--31972425	11	3.3	11	84	16	54	29	20	14	35	1.93
31975857--31975883	14	1.9	14	100	0	54	62	7	7	22	1.46
31978353--31978392	6	6.8	6	88	5	55	65	0	5	30	1.14
31978353--31978392	17	2.3	18	86	4	55	65	0	5	30	1.14
31982748--31982801	28	1.9	28	100	0	108	18	22	27	31	1.97
31988566--31988670	27	3.9	27	81	12	117	36	20	24	18	1.95
31988559--31988670	54	2.1	54	83	6	138	36	21	24	17	1.95
31991111--31991150	20	2.1	19	85	4	53	45	10	7	37	1.66
31996110--31996142	15	2.3	15	94	5	59	87	0	0	12	0.53
32010643--32010690	22	2.2	22	80	0	60	58	12	12	16	1.63
32011519--32011546	3	9.3	3	100	0	56	35	0	0	64	0.94
32017053--32017133	25	3.2	26	85	5	103	34	16	7	41	1.76
32022552--32022610	29	2.0	29	93	0	100	20	20	22	37	1.95
32025410--32025449	4	10.5	4	80	20	50	0	20	0	80	0.72
32025409--32025449	14	3.0	14	85	3	57	0	19	0	80	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32025409--32025449	18	2.1	19	86	13	57	0	19	0	80	0.71
32028838--32028887	21	2.4	21	86	3	66	40	22	0	38	1.54
32031730--32031767	20	1.9	20	84	10	51	65	7	2	23	1.32
32031728--32031792	19	3.4	19	76	21	57	60	6	1	32	1.31
32031909--32031934	10	2.6	10	100	0	52	11	7	0	80	0.89
32032257--32032301	19	2.3	20	88	3	65	35	6	0	57	1.25
32032250--32032312	29	2.1	29	83	13	76	34	4	0	60	1.18
32032250--32032331	10	8.5	10	75	16	68	32	3	1	62	1.21
32032257--32032331	19	4.0	18	78	16	64	33	4	1	61	1.23
32032339--32032371	18	1.9	17	88	11	50	42	12	15	30	1.83
32032476--32032541	32	2.1	32	85	0	87	27	22	25	24	2.00
32032959--32033035	20	3.7	20	75	13	73	50	15	3	29	1.62
32033115--32033162	20	2.4	20	89	0	69	54	12	2	31	1.49
32034247--32034316	22	2.9	24	78	19	74	61	1	0	37	1.05
32046090--32046120	16	1.9	16	93	0	53	29	0	12	58	1.35
32055534--32055597	33	1.9	33	87	0	92	34	21	9	34	1.86
32060810--32060836	3	9.0	3	100	0	54	33	33	0	33	1.58
32061367--32061445	30	2.6	30	91	0	122	17	34	31	16	1.93
32087443--32087472	13	2.3	13	100	0	60	33	0	16	50	1.46
32093665--32093931	46	5.7	47	75	13	221	27	19	28	23	1.99
32095450--32095715	130	2.0	132	93	2	455	21	28	27	22	1.99
32101241--32101274	15	2.3	15	89	0	50	32	2	23	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32101371--32101691	46	6.7	47	72	14	205	30	20	26	23	1.98
32101508--32101688	101	1.8	96	82	8	229	30	20	25	23	1.98
32110730--32111039	38	8.1	38	91	1	485	20	22	26	30	1.98
32111032--32111113	43	1.9	43	92	0	137	12	21	34	31	1.91
32115398--32115438	20	2.1	19	86	13	57	19	12	12	56	1.67
32138714--32138766	20	2.6	21	77	17	58	52	3	20	22	1.62
32140128--32140168	20	2.0	20	100	0	82	24	39	9	26	1.86
32140355--32140453	49	2.0	49	98	0	189	44	18	1	36	1.56
32144016--32144069	27	2.0	27	100	0	108	48	7	3	40	1.49
32152479--32152599	59	2.1	59	98	0	233	39	6	22	31	1.80
32154184--32154239	28	2.0	28	89	6	87	10	23	39	26	1.87
32171539--32172834	328	4.0	328	99	0	2571	34	13	11	40	1.81
32171539--32172834	653	2.0	656	99	0	2571	34	13	11	40	1.81
32173039--32173079	20	2.0	20	90	0	64	39	12	19	29	1.88
32180618--32180717	50	2.0	50	98	0	191	34	25	12	29	1.91
32181887--32181962	27	2.9	27	86	5	93	30	15	22	31	1.95
32181899--32181968	27	2.6	27	88	2	97	31	18	18	31	1.95
32181959--32182210	54	4.7	54	81	1	227	42	21	7	29	1.80
32181976--32182210	81	2.9	82	78	4	217	42	20	7	28	1.80
32181952--32182267	27	11.7	27	77	7	160	41	19	7	30	1.80
32182318--32182374	27	2.1	28	80	9	64	29	26	24	19	1.98
32182334--32182389	27	2.1	26	83	9	69	28	21	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32182764--32182824	27	2.3	26	81	13	70	18	22	29	29	1.97
32182788--32182863	33	2.3	33	88	0	107	23	19	27	28	1.98
32183122--32183171	17	2.8	18	75	6	57	40	20	14	26	1.90
32185356--32185441	36	2.4	35	81	11	86	15	20	0	63	1.30
32189958--32189996	19	2.1	19	100	0	78	48	10	10	30	1.70
32198246--32198287	16	2.7	15	85	7	57	47	2	0	50	1.14
32209293--32209342	26	2.0	25	84	4	64	42	2	10	46	1.49
32210358--32210387	15	2.0	15	100	0	60	46	6	0	46	1.29
32212258--32213105	422	2.0	422	97	0	1615	36	17	17	28	1.92
32230088--32230177	45	2.0	45	100	0	180	35	8	20	35	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290