genome.fa.s7.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  110  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34115372--34115415	16	2.6	16	85	7	52	65	4	11	18	1.40
34115935--34115996	28	2.1	28	91	5	97	41	1	6	50	1.38
34117301--34117440	39	3.6	39	85	0	199	37	11	14	36	1.82
34117290--34117436	78	1.9	78	89	0	231	38	11	13	36	1.81
34123651--34123679	13	2.2	13	100	0	58	55	13	0	31	1.39
34129748--34129907	38	4.2	38	86	6	191	21	21	26	30	1.98
34129748--34129907	76	2.1	76	87	2	223	21	21	26	30	1.98
34129900--34130025	45	2.8	45	90	2	191	20	21	29	28	1.98
34129903--34130056	45	3.4	44	83	4	112	22	22	28	26	1.99
34135823--34136006	40	4.6	39	84	4	210	24	22	27	25	2.00
34135823--34136006	79	2.3	81	83	8	227	24	22	27	25	2.00
34135875--34136039	79	2.1	79	84	6	210	26	21	27	25	1.99
34139693--34139721	13	2.2	13	100	0	58	55	13	0	31	1.39
34140997--34141052	21	2.6	21	97	2	103	46	0	7	46	1.30
34140965--34141028	28	2.2	30	91	5	105	40	1	6	51	1.36
34142329--34142367	15	2.7	15	84	4	53	41	2	0	56	1.13
34160901--34160948	24	2.0	24	84	4	62	29	43	2	25	1.66
34169663--34169922	39	6.7	39	92	2	400	18	21	29	30	1.97
34169663--34169909	77	3.2	76	90	4	379	17	21	29	31	1.96
34169663--34169922	116	2.2	117	90	4	400	18	21	29	30	1.97
34176054--34176117	28	2.3	27	81	5	83	39	9	21	29	1.85
34176189--34176401	39	5.5	39	90	3	306	16	21	30	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34178426--34178609	78	2.3	81	86	6	252	25	27	22	23	2.00
34178426--34178609	40	4.7	40	86	6	250	25	27	22	23	2.00
34184254--34184436	79	2.3	81	83	7	223	25	27	22	24	2.00
34184252--34184436	40	4.7	40	81	9	209	25	28	22	23	1.99
34185563--34185682	56	2.1	56	98	0	231	22	23	9	45	1.81
34189627--34189666	5	8.4	5	86	10	57	82	0	2	15	0.77
34189627--34189666	9	4.2	10	81	12	57	82	0	2	15	0.77
34190565--34190596	16	2.0	16	100	0	64	37	18	6	37	1.76
34205024--34205105	41	2.0	41	95	0	146	47	18	8	25	1.76
34209842--34209867	12	2.2	12	100	0	52	42	0	15	42	1.47
34211042--34211134	49	1.9	48	82	2	114	27	18	24	29	1.98
34223536--34223707	93	1.8	93	84	7	233	27	18	29	25	1.98
34223487--34223755	49	5.7	47	75	11	172	30	17	27	24	1.97
34225460--34225507	25	1.9	25	100	0	96	31	4	27	37	1.76
34227875--34228000	27	4.7	27	78	0	126	17	20	22	39	1.92
34227958--34228014	27	2.1	27	80	6	62	19	12	22	45	1.83
34233372--34233491	56	2.1	56	98	0	231	45	9	23	22	1.81
34234621--34234917	80	3.7	79	84	7	345	25	21	27	25	1.99
34234673--34234917	120	2.1	118	86	6	334	26	20	27	25	1.99
34234620--34234884	40	6.7	40	88	6	351	24	21	27	25	2.00
34239085--34239126	17	2.2	20	88	12	63	66	0	33	0	0.92
34239961--34239986	6	4.3	6	100	0	52	19	19	15	46	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34246900--34246947	22	2.2	21	78	10	51	37	16	6	39	1.74
34246926--34247078	35	4.3	35	91	2	234	36	15	11	37	1.82
34253708--34253766	31	1.9	31	100	0	118	38	11	32	16	1.86
34255576--34255664	42	2.1	42	93	0	151	28	21	15	34	1.94
34262485--34262569	42	2.0	42	100	0	170	23	23	14	38	1.91
34266633--34266662	11	2.7	11	94	0	51	50	13	0	36	1.42
34271118--34271192	31	2.4	31	79	0	96	38	5	13	42	1.67
34271860--34271899	20	2.0	20	85	0	53	67	2	5	25	1.23
34277905--34277959	6	9.2	6	100	0	110	67	0	16	16	1.24
34277948--34277989	18	2.4	18	92	4	68	57	11	14	16	1.66
34281496--34281530	18	1.9	18	94	0	61	40	2	0	57	1.14
34281978--34282019	21	2.0	21	100	0	84	47	19	9	23	1.78
34285754--34285801	17	2.9	17	90	3	80	39	45	4	10	1.58
34286178--34286208	16	1.9	16	93	0	53	3	16	0	80	0.83
34287054--34287302	3	85.0	3	66	21	102	29	7	1	62	1.30
34287136--34287230	38	2.5	40	78	14	110	29	4	1	65	1.18
34287074--34287251	55	3.2	54	76	16	141	30	6	1	62	1.27
34287054--34287318	52	4.9	53	69	16	147	29	7	1	62	1.30
34287707--34287749	22	2.0	21	81	4	50	30	11	6	51	1.65
34287766--34287794	11	2.7	11	94	5	51	37	0	6	55	1.27
34287820--34287872	25	2.2	24	83	12	65	35	18	3	41	1.69
34287936--34287970	11	3.2	11	100	0	70	8	20	17	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34299410--34299444	16	2.2	16	94	0	61	60	0	40	0	0.97
34300613--34300657	22	2.0	22	95	0	81	35	8	2	53	1.45
34305653--34305692	20	2.0	20	100	0	80	20	10	35	35	1.86
34309356--34309670	152	2.1	152	87	5	456	43	10	4	41	1.59
34328311--34328486	46	3.8	46	79	12	216	20	21	29	28	1.98
34328308--34328479	93	1.8	93	96	0	317	20	21	29	27	1.98
34333347--34333394	23	2.3	19	79	13	51	58	2	12	27	1.46
34335032--34335175	39	3.7	39	88	0	225	22	21	27	29	1.99
34347686--34347855	46	3.7	46	76	13	195	22	20	27	29	1.98
34347683--34347853	93	1.8	93	94	0	306	22	20	28	29	1.98
34350520--34350703	43	4.3	43	84	0	206	34	20	13	31	1.91
34354692--34354772	23	3.3	23	70	26	76	45	11	22	20	1.82
34356911--34357188	49	5.6	48	73	16	198	25	22	15	35	1.94
34358866--34358935	35	2.0	35	100	0	140	22	11	11	54	1.68
34361260--34361320	21	2.9	21	83	11	56	50	18	14	16	1.78
34376299--34376360	31	2.0	31	90	0	97	24	30	35	9	1.87
34380932--34381106	45	3.8	46	79	13	216	29	29	20	20	1.98
34380939--34381109	93	1.8	92	96	1	315	28	29	21	21	1.98
34388500--34388671	93	1.8	93	95	2	310	28	29	20	20	1.98
34388493--34388668	46	3.8	46	79	14	209	29	29	20	20	1.98
34408615--34408761	44	3.4	44	82	2	172	26	12	25	35	1.92
34409564--34409604	20	2.0	20	85	4	55	46	12	7	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34410403--34410541	43	3.2	43	76	6	138	30	25	16	26	1.97
34412331--34412499	43	4.0	42	78	6	151	33	22	15	28	1.95
34414697--34414947	80	3.2	79	81	8	271	26	21	26	25	2.00
34414690--34414914	40	5.7	40	84	7	280	24	22	27	25	2.00
34414690--34414947	119	2.2	119	81	8	285	25	22	26	25	2.00
34419746--34419917	46	3.7	46	85	7	199	29	18	29	23	1.97
34420028--34420090	30	2.1	30	100	0	126	41	12	6	39	1.69
34421078--34421118	22	1.9	22	95	5	75	9	36	29	24	1.87
34422247--34422300	20	2.7	20	82	0	72	55	3	1	38	1.28
34422242--34422309	20	3.4	21	77	6	70	54	2	1	41	1.24
34422317--34422359	19	2.2	19	87	4	59	37	2	2	58	1.24
34426298--34426609	39	8.1	39	92	1	513	21	25	29	23	1.99
34426298--34426617	77	4.1	78	94	2	531	22	24	29	23	1.99
34467464--34467610	47	3.1	47	86	0	195	32	10	29	27	1.90
34467493--34467566	23	3.1	25	62	25	59	29	13	33	22	1.93
34467581--34467764	98	1.9	96	92	4	307	35	6	26	30	1.82
34467580--34467764	48	3.8	48	89	5	300	35	6	26	31	1.82
34467910--34467989	37	2.2	37	88	0	124	22	21	30	26	1.99
34469195--34469368	40	4.3	40	93	0	285	25	20	27	26	1.99
34470132--34470209	36	2.1	37	88	2	113	25	32	17	24	1.97
34470379--34470456	25	3.2	24	64	10	61	33	26	5	34	1.79
34470328--34471701	94	14.9	94	79	13	1434	30	28	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34470328--34471680	47	28.3	49	84	10	1251	30	28	8	33	1.86
34470986--34471037	25	2.1	25	100	0	104	36	21	7	34	1.82
34470995--34471055	25	2.4	25	83	5	68	36	22	3	37	1.71
34470749--34471701	264	3.5	264	93	4	1513	30	28	8	33	1.86
34471250--34471301	25	2.1	25	100	0	104	36	21	7	34	1.82
34471259--34471319	25	2.4	25	83	5	68	36	22	3	37	1.71
34471576--34471654	25	3.3	25	64	10	74	34	27	5	32	1.79
34474186--34474288	40	2.6	40	84	0	125	25	23	27	24	2.00
34478324--34478508	48	3.8	48	85	11	277	36	5	26	31	1.81
34478325--34478508	98	1.9	95	89	7	282	36	5	26	30	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290