Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  135  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42591753--42591842
41
2.2
41
83
0
117
27
21
22
28
1.99
42592109--42592146
7
5.4
7
90
0
58
15
0
26
57
1.38
42592165--42592230
7
9.4
7
77
6
71
27
1
40
30
1.65
42592268--42592353
29
3.0
28
81
3
91
24
2
36
37
1.68
42592270--42592353
7
11.7
7
68
8
53
23
2
35
38
1.68
42592272--42592353
28
2.9
29
82
8
96
24
2
36
36
1.69
42592504--42592562
15
3.8
15
72
24
59
49
8
1
40
1.43
42592512--42592584
32
2.3
32
92
2
121
46
9
2
41
1.51
42594180--42594220
15
2.7
16
82
17
52
70
0
2
26
0.99
42594191--42594238
17
2.8
17
81
18
55
68
2
4
25
1.18
42594181--42594255
16
4.3
19
78
20
60
66
1
4
28
1.17
42594211--42594255
19
2.4
20
85
10
60
64
2
4
28
1.25
42594250--42594291
18
2.3
19
88
8
61
71
4
2
21
1.16
42594252--42594292
19
2.2
18
86
4
55
73
4
2
19
1.13
42600557--42600627
34
2.1
34
97
0
133
35
15
18
30
1.92
42600792--42600871
38
2.1
38
95
0
142
42
15
11
31
1.81
42601299--42601356
9
6.6
9
78
11
66
36
0
1
62
1.06
42601315--42601376
15
3.9
15
73
19
54
43
1
1
53
1.20
42601299--42601363
34
1.9
34
93
6
114
40
0
1
58
1.07
42601299--42601363
9
7.3
9
76
10
53
40
0
1
58
1.07
42601299--42601376
34
2.3
34
87
10
99
41
1
1
56
1.15
42601400--42601428
14
2.1
14
100
0
58
37
0
0
62
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42611606--42611654
18
2.8
17
84
6
71
40
2
0
57
1.10
42612598--42612641
18
2.4
18
85
11
54
59
0
0
40
0.98
42613133--42613177
23
2.0
23
100
0
90
22
22
17
37
1.94
42615443--42615674
40
5.8
40
89
5
328
26
28
22
22
1.99
42615417--42615674
80
3.2
80
87
7
339
26
27
22
23
2.00
42619853--42619936
44
1.9
44
87
0
123
33
25
16
25
1.96
42625965--42626146
49
3.7
48
75
11
181
29
19
28
22
1.98
42625965--42626148
98
1.9
98
86
2
262
29
19
27
23
1.98
42633614--42633780
49
3.4
48
78
11
171
26
22
28
22
1.99
42634254--42634299
18
2.3
21
75
25
62
26
4
36
32
1.76
42634262--42634298
18
2.1
18
100
0
74
27
5
40
27
1.78
42639084--42639145
30
2.1
30
93
0
106
32
16
16
35
1.91
42644066--42644254
47
3.8
53
80
8
145
24
14
28
32
1.94
42644080--42644240
47
3.3
46
82
7
169
26
14
26
32
1.95
42653067--42653114
20
2.5
20
89
3
71
0
25
4
70
1.04
42657432--42657579
73
2.0
73
96
0
269
33
19
2
43
1.65
42666244--42666277
13
2.7
12
86
13
50
88
8
0
2
0.62
42671508--42671543
17
2.1
17
90
10
56
0
8
2
88
0.59
42677575--42677609
18
1.9
18
88
0
52
34
2
14
48
1.58
42681067--42681121
27
2.0
27
96
0
101
23
32
36
7
1.82
42681808--42681836
14
2.1
14
100
0
58
55
0
0
44
0.99
42681832--42683008
144
8.1
143
88
5
1673
59
7
5
27
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42682646--42682720
30
2.8
25
76
18
78
70
4
2
22
1.16
42682941--42683010
30
2.4
28
72
11
77
67
4
2
25
1.23
42689334--42689377
4
10.5
4
83
16
54
0
27
0
72
0.85
42689469--42689528
27
2.2
27
87
0
93
16
38
25
20
1.93
42698194--42698220
12
2.2
12
100
0
54
40
0
11
48
1.39
42706176--42706496
27
11.8
27
78
3
225
41
17
10
30
1.82
42706204--42706473
108
2.5
108
83
5
314
41
15
11
32
1.82
42706956--42707020
22
3.0
22
75
8
69
21
26
21
30
1.98
42708179--42708242
32
2.0
32
96
0
119
31
18
17
32
1.94
42712522--42712587
33
2.0
33
100
0
132
21
12
18
48
1.80
42718180--42718394
46
4.6
47
79
9
185
30
20
26
22
1.98
42718177--42718397
93
2.4
93
82
8
245
30
20
27
22
1.98
42719520--42719558
21
1.9
21
89
5
62
17
41
23
17
1.91
42725403--42725462
30
2.0
31
93
3
104
35
11
23
30
1.90
42725797--42726038
46
5.2
46
75
10
199
30
17
28
23
1.97
42725839--42726059
47
4.7
47
75
15
174
28
17
29
25
1.97
42725794--42726061
94
2.9
93
77
10
226
28
17
29
25
1.97
42729207--42729237
15
2.1
15
100
0
62
32
19
6
41
1.77
42738418--42738480
26
2.4
26
94
0
108
20
30
20
28
1.98
42742302--42742353
21
2.5
21
96
0
95
48
11
21
19
1.80
42742821--42742864
21
2.1
21
95
0
79
40
9
27
22
1.84
42750085--42750119
18
1.9
18
88
11
54
14
25
42
17
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42756954--42757026
30
2.4
30
83
0
83
17
27
24
30
1.97
42757956--42757991
15
2.3
16
90
4
56
69
5
2
22
1.22
42758745--42758935
38
5.0
38
81
0
220
15
19
30
34
1.93
42760626--42760666
12
3.3
12
86
3
55
21
24
2
51
1.60
42760836--42760917
32
2.4
33
84
12
103
30
25
21
21
1.99
42760857--42760918
32
1.9
32
93
0
106
32
25
22
19
1.97
42771406--42771502
37
2.6
37
86
0
140
34
27
18
19
1.95
42772487--42772528
21
1.9
23
85
9
61
45
9
0
45
1.36
42774082--42774124
19
2.3
19
95
0
77
9
27
20
41
1.83
42789571--42789624
5
10.4
5
78
13
56
24
0
0
75
0.80
42790143--42790185
6
7.2
6
92
7
70
16
0
0
83
0.64
42790201--42790236
15
2.5
15
90
4
56
25
2
0
72
0.98
42790174--42790270
46
2.1
46
83
12
121
26
5
1
67
1.18
42790247--42790285
13
2.8
14
84
11
53
25
5
0
69
1.09
42790371--42790432
25
2.5
24
75
17
63
32
9
1
56
1.41
42790481--42790515
15
2.3
15
90
0
52
14
45
17
22
1.84
42791856--42791890
17
2.1
17
88
0
52
14
0
2
82
0.77
42792392--42792423
16
2.0
16
93
0
55
28
0
6
65
1.16
42798392--42798432
21
2.0
21
90
0
64
19
29
21
29
1.98
42808301--42808433
31
4.3
31
68
16
105
41
12
6
40
1.67
42808313--42808429
62
1.9
62
82
10
150
42
11
6
39
1.67
42811536--42811574
20
1.9
21
84
5
53
53
0
17
28
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42819382--42819466
29
2.9
29
76
13
84
40
16
3
40
1.66
42820586--42820626
17
2.4
17
84
11
57
19
0
4
75
0.98
42820585--42820637
18
3.0
18
81
10
65
20
0
5
73
1.03
42833523--42833581
19
3.1
19
85
7
75
72
1
6
18
1.15
42833569--42833695
28
4.5
28
70
9
87
62
5
2
29
1.31
42833520--42833713
85
2.3
83
81
11
209
64
3
3
27
1.26
42833527--42833713
10
19.8
9
69
16
85
64
3
3
27
1.27
42833527--42833713
19
9.9
19
67
18
70
64
3
3
27
1.27
42834101--42834217
49
2.3
52
83
12
138
32
0
5
60
1.27
42834240--42834309
8
7.9
8
75
19
59
31
1
0
67
1.00
42840876--42840984
34
3.4
32
70
17
91
29
8
2
59
1.40
42840876--42841000
63
2.0
65
90
3
200
32
7
2
57
1.39
42848357--42848404
20
2.5
20
86
3
62
64
2
6
27
1.28
42848428--42848457
15
2.0
15
93
0
51
40
10
0
50
1.36
42850009--42850065
6
9.5
6
100
0
114
82
0
0
17
0.67
42856383--42856430
20
2.5
20
86
3
62
64
2
6
27
1.28
42856454--42856483
15
2.0
15
93
0
51
40
10
0
50
1.36
42858310--42858396
26
3.5
26
68
15
83
20
2
26
50
1.60
42858300--42858400
49
2.1
49
100
0
202
21
1
28
47
1.62
42872665--42872815
43
3.5
42
81
7
162
28
12
25
33
1.92
42872719--42872831
43
2.7
43
80
4
122
27
12
26
33
1.92
42874179--42874258
41
2.0
41
94
0
142
33
8
21
36
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42876346--42876447
43
2.4
43
83
3
125
29
14
22
33
1.94
42878985--42879016
16
2.0
16
93
0
55
28
0
15
56
1.40
42879443--42879775
24
13.9
24
73
10
252
24
12
26
36
1.91
42879443--42879746
48
6.3
48
78
3
308
25
11
26
36
1.90
42879444--42879746
96
3.2
96
94
0
525
25
11
26
36
1.90
42884774--42884996
40
5.6
40
83
3
227
24
20
28
26
1.99
42884849--42885031
79
2.3
80
81
1
217
25
20
28
25
1.99
42889727--42889830
43
2.4
43
80
3
120
25
16
24
33
1.96
42892219--42892380
45
3.6
45
90
3
240
22
22
29
25
1.99
42892372--42892474
41
2.5
41
88
0
161
32
16
28
23
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290