genome.fa.s7.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  189  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60735082--60735305	14	15.9	14	70	20	105	60	2	4	31	1.32
60735138--60735263	50	2.6	47	78	16	116	62	0	5	30	1.23
60735204--60735268	32	1.9	34	81	12	80	60	1	9	29	1.37
60735279--60735319	14	2.9	14	88	3	64	58	0	0	41	0.98
60735285--60735376	23	3.8	26	69	13	79	52	4	1	42	1.28
60736574--60736613	19	2.1	19	90	0	62	30	15	2	52	1.55
60739307--60739345	18	2.1	19	90	4	62	61	0	33	5	1.18
60750725--60750900	46	3.8	47	79	5	189	22	21	27	28	1.99
60750721--60750892	93	1.8	93	87	4	258	22	21	27	27	1.99
60758845--60758967	42	2.9	43	82	9	137	30	26	20	22	1.98
60758850--60759007	43	3.7	43	78	10	146	29	26	20	22	1.99
60762244--60762319	38	2.0	38	89	0	116	34	18	13	34	1.89
60765303--60765417	27	4.3	26	83	9	142	35	22	23	18	1.95
60773154--60773239	27	3.2	28	81	14	110	39	22	20	17	1.92
60773343--60773405	26	2.4	26	92	7	101	28	7	25	38	1.84
60786654--60786699	24	1.9	24	81	0	56	41	4	36	17	1.69
60788700--60788790	32	2.8	32	77	6	94	25	19	19	35	1.96
60793656--60793826	48	3.6	48	78	13	174	27	21	28	22	1.99
60795009--60795073	28	2.3	28	94	0	112	16	21	44	16	1.86
60801187--60801282	47	2.0	47	93	0	165	38	8	23	29	1.84
60807707--60807915	53	3.9	53	77	4	204	37	18	23	19	1.94
60811545--60811632	44	2.0	44	91	4	142	38	13	20	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60814803--60815009	53	3.8	53	74	4	191	38	17	23	20	1.93
60818046--60818277	39	6.0	39	87	3	317	18	20	30	31	1.96
60821900--60821978	40	2.0	40	87	0	113	35	24	16	24	1.95
60823637--60823735	28	3.5	28	74	15	105	28	15	28	28	1.96
60823637--60823757	56	2.2	56	92	0	197	26	14	30	28	1.95
60823666--60823757	28	3.3	27	74	17	98	25	14	32	28	1.94
60831286--60831383	28	3.5	28	69	15	94	23	15	33	27	1.95
60832733--60832764	16	1.9	17	93	6	57	43	9	9	37	1.69
60835723--60835946	40	5.5	40	78	7	211	27	15	24	32	1.95
60842876--60842909	18	1.9	18	88	5	52	29	14	17	38	1.90
60844234--60844276	8	5.4	8	80	0	50	4	23	20	51	1.66
60844234--60844276	16	2.7	16	88	0	59	4	23	20	51	1.66
60845485--60845516	16	2.0	16	93	0	55	9	6	34	50	1.60
60853595--60853643	24	2.0	25	88	4	73	24	14	20	40	1.89
60856364--60856525	47	3.4	47	86	3	216	32	9	30	27	1.88
60856644--60856722	37	2.1	37	88	0	113	24	18	29	27	1.98
60859916--60860004	42	2.1	42	97	2	171	42	0	25	31	1.55
60864515--60864556	22	1.9	22	100	0	84	28	30	9	30	1.89
60867562--60867600	20	2.0	20	100	0	78	20	30	15	33	1.94
60873723--60873810	42	2.1	42	87	4	124	36	14	13	35	1.86
60873941--60874064	26	4.8	26	86	1	171	27	22	25	25	2.00
60873941--60874060	52	2.4	51	91	2	197	28	23	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60874874--60874950	27	2.8	26	77	14	84	20	19	20	38	1.93
60874991--60875098	27	3.9	27	77	15	96	31	9	17	41	1.81
60875053--60875327	27	10.2	26	75	9	214	29	8	21	41	1.81
60875083--60875314	81	2.9	80	86	1	277	29	7	20	42	1.80
60875305--60875408	27	3.9	27	90	0	154	42	7	20	29	1.80
60875279--60875399	54	2.2	54	85	0	152	41	8	18	32	1.80
60877900--60878021	26	4.8	26	85	1	158	27	22	22	27	2.00
60877904--60878021	52	2.3	51	89	2	184	27	22	22	27	1.99
60878832--60878908	27	2.9	27	79	11	86	20	20	20	37	1.94
60878998--60879229	27	8.6	27	73	9	159	29	7	21	40	1.81
60878955--60879285	27	12.2	27	74	10	147	32	8	20	38	1.82
60878934--60879231	107	2.7	107	75	7	262	30	8	19	40	1.82
60879183--60879303	54	2.2	54	86	0	161	41	9	18	31	1.81
60879209--60879312	27	3.9	27	90	0	163	42	8	20	28	1.81
60886595--60886638	22	2.0	22	82	8	54	40	18	0	40	1.50
60888691--60888734	16	2.6	17	85	7	54	6	18	0	75	1.02
60889880--60889926	24	2.0	24	91	0	76	36	19	0	44	1.51
60890957--60891081	66	1.9	66	85	3	171	28	13	16	41	1.86
60894316--60894354	20	2.0	20	85	9	55	53	5	0	41	1.23
60894818--60894850	16	2.1	16	100	0	66	24	18	15	42	1.88
60895098--60895136	18	2.2	18	90	9	62	61	0	0	38	0.96
60900090--60900134	22	1.9	25	86	13	69	57	8	2	31	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60900085--60900138	23	2.2	26	81	18	71	57	7	3	31	1.44
60900362--60900411	16	3.3	16	67	16	52	44	12	16	28	1.83
60900362--60900420	29	2.0	30	96	3	111	42	13	13	30	1.83
60911637--60911716	7	11.4	7	89	0	115	18	0	38	42	1.51
60930835--60930908	27	2.7	27	79	4	78	27	14	32	25	1.95
60933110--60933165	27	2.1	27	96	0	103	39	7	19	33	1.79
60936698--60936742	20	2.2	21	88	4	65	37	0	20	42	1.52
60940930--60940955	13	2.0	13	100	0	52	30	38	23	7	1.83
60942688--60942719	16	2.0	16	93	0	55	34	18	0	46	1.49
60942924--60943006	26	3.3	26	64	24	68	32	27	13	26	1.93
60942919--60943212	50	5.9	50	84	2	356	30	25	17	26	1.97
60942922--60943211	151	1.9	151	93	0	499	31	25	17	26	1.97
60943560--60943606	19	2.3	20	82	10	60	48	14	0	36	1.44
60946167--60946205	15	2.6	15	92	8	62	51	15	17	15	1.77
60949379--60949772	50	7.9	50	77	5	373	30	24	18	26	1.98
60949382--60949773	151	2.6	150	91	0	622	30	24	18	26	1.98
60949380--60949772	101	3.9	99	77	5	405	30	24	18	26	1.98
60950116--60950162	20	2.3	20	88	3	67	48	10	0	40	1.38
60952201--60952372	46	3.7	46	84	6	188	22	27	19	29	1.98
60954978--60955009	15	2.1	16	88	11	50	53	21	3	21	1.60
60958042--60958154	45	2.6	45	83	8	126	24	27	23	23	2.00
60958484--60958638	43	3.6	43	95	0	274	31	34	23	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60958631--60958714	38	2.2	38	89	0	132	30	27	21	20	1.98
60961710--60961763	20	2.7	20	82	2	63	1	31	5	61	1.30
60963089--60963264	40	4.4	40	76	4	133	25	18	20	35	1.95
60963913--60964310	27	14.9	27	77	9	329	25	14	19	40	1.90
60963913--60964310	54	7.5	54	81	8	413	25	14	19	40	1.90
60963913--60964278	133	2.8	132	87	1	518	25	15	18	40	1.90
60965730--60966119	211	1.9	211	83	11	518	55	20	5	18	1.63
60972785--60973024	27	8.9	27	90	2	367	41	21	18	18	1.90
60973015--60973338	27	12.1	27	79	7	308	27	13	19	39	1.89
60973018--60973361	160	2.2	159	82	5	408	26	13	19	40	1.89
60980581--60980674	40	2.3	40	89	3	145	25	27	22	24	2.00
60980609--60980751	72	2.0	73	82	6	175	25	25	20	27	1.99
60988444--60988627	79	2.3	81	83	8	227	25	27	22	24	2.00
60988425--60988627	39	5.1	40	81	9	229	24	27	22	25	2.00
61000971--61001194	40	5.6	40	84	4	290	26	27	22	23	1.99
61000995--61001194	83	2.5	80	87	2	283	27	28	21	22	1.99
61005058--61005212	43	3.6	42	76	9	127	23	19	26	30	1.98
61005058--61005208	42	3.5	42	73	11	121	24	19	25	29	1.99
61007960--61008037	37	2.1	37	87	0	111	39	30	12	16	1.86
61013767--61013800	17	2.0	17	88	0	50	20	5	29	44	1.75
61017850--61018008	42	3.8	42	78	5	176	27	23	15	33	1.95
61017851--61018008	85	1.9	84	86	1	226	27	22	15	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61019633--61019692	23	2.5	23	83	5	75	35	6	16	41	1.75
61024409--61025022	47	13.1	47	90	6	908	32	9	29	28	1.88
61024409--61025022	96	6.6	96	88	6	915	32	9	29	28	1.88
61024833--61024904	36	2.0	36	97	0	135	29	13	30	26	1.94
61024791--61024953	83	1.9	84	95	2	292	30	11	30	27	1.91
61025141--61025219	37	2.1	37	90	0	122	24	18	31	25	1.98
61027082--61027180	43	2.3	43	100	0	198	23	15	34	27	1.94
61027166--61027239	29	2.6	29	87	8	98	27	16	31	25	1.96
61027548--61027731	40	4.6	40	80	9	155	25	23	27	23	2.00
61027628--61027862	40	5.9	40	87	1	285	24	22	28	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290