genome.fa.s7.2.7.7.80.10.50.1000.169.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  169  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55220184--55220624	50	8.7	50	77	7	401	26	17	24	31	1.97
55231158--55231189	16	2.0	16	93	0	55	46	0	18	34	1.49
55234134--55234227	28	3.3	28	83	5	109	24	13	34	27	1.93
55236514--55236621	47	2.4	47	82	4	132	28	23	14	33	1.94
55240846--55240962	48	2.5	49	80	6	134	28	21	13	36	1.91
55242265--55242300	18	2.1	18	89	5	56	47	8	13	30	1.73
55248787--55248909	29	4.3	29	81	6	135	26	14	30	28	1.95
55250034--55250067	18	1.9	18	88	5	52	41	11	17	29	1.85
55250625--55250707	27	3.1	27	87	0	103	31	13	18	37	1.89
55254744--55254779	12	3.1	12	96	4	65	25	0	22	52	1.47
55257644--55257778	40	3.3	40	80	7	148	23	14	28	34	1.93
55267723--55267894	93	1.8	93	94	0	308	27	30	21	20	1.98
55267716--55267891	46	3.8	46	79	12	207	28	30	21	19	1.98
55278998--55279728	358	2.0	358	97	0	1363	26	19	16	36	1.93
55284198--55284237	21	2.0	20	85	14	55	30	22	12	35	1.91
55286080--55286214	64	2.1	64	91	1	216	31	0	17	51	1.46
55286100--55286199	31	3.2	31	68	25	91	31	0	17	52	1.45
55291735--55291964	53	4.3	54	75	3	203	20	24	17	37	1.93
55296315--55296490	46	3.8	46	76	16	175	22	19	28	29	1.98
55296311--55296482	93	1.8	93	93	0	299	22	19	29	28	1.98
55301619--55301826	53	3.9	54	76	1	202	20	24	17	37	1.94
55308690--55308843	28	5.5	28	91	1	229	27	12	27	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55313563--55313620	21	2.7	22	84	12	84	29	12	20	37	1.89
55320851--55320951	35	2.9	35	80	5	123	28	9	18	42	1.83
55320854--55320976	35	3.5	35	81	4	106	28	8	20	43	1.80
55320920--55320986	35	1.9	35	81	6	82	28	7	16	47	1.73
55322580--55322624	18	2.5	18	88	0	72	71	4	17	6	1.25
55325142--55325229	42	2.1	42	89	0	131	27	19	14	38	1.91
55328925--55328980	29	1.9	29	92	0	94	28	14	25	32	1.94
55330225--55330305	29	2.7	30	78	14	78	27	24	17	30	1.97
55330513--55330582	25	2.8	25	93	0	113	24	22	25	27	2.00
55330785--55330898	27	4.3	27	80	4	124	26	18	19	35	1.95
55330882--55330949	26	2.6	25	72	11	64	26	4	30	38	1.76
55330917--55331143	27	8.4	26	80	7	109	30	8	21	39	1.84
55331018--55331188	82	2.1	81	88	1	252	32	8	18	40	1.82
55330991--55331196	109	1.9	109	90	0	331	31	9	19	39	1.83
55330989--55331196	27	7.7	27	85	1	272	31	9	19	39	1.83
55335613--55335700	29	3.1	29	85	1	115	29	11	29	29	1.92
55342764--55342805	14	2.9	15	79	13	52	40	2	19	38	1.64
55350152--55350209	28	2.1	28	96	0	107	48	6	15	29	1.71
55350832--55350873	14	2.9	15	79	13	52	40	2	19	38	1.64
55350998--55351156	43	3.8	41	79	9	151	23	17	27	30	1.97
55356128--55356168	14	3.0	14	82	3	57	56	12	31	0	1.36
55359623--55359766	48	3.0	48	91	0	216	19	19	27	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55363169--55363235	27	2.5	27	92	0	107	29	11	17	40	1.86
55374112--55374144	11	3.0	11	100	0	66	54	18	0	27	1.44
55381466--55381500	14	2.4	15	85	4	54	48	8	2	40	1.49
55384392--55384499	40	2.7	40	92	0	180	28	28	20	22	1.98
55391659--55391776	40	3.0	40	91	0	191	28	28	20	22	1.98
55399848--55400001	80	1.9	80	93	2	265	23	29	23	23	1.99
55399822--55399994	40	4.3	40	82	6	208	24	28	23	23	1.99
55410397--55410498	40	2.6	40	87	4	136	24	26	24	24	2.00
55411822--55411867	22	2.0	23	84	12	60	21	19	0	58	1.39
55416565--55416771	67	3.2	63	75	9	184	32	16	28	22	1.96
55418961--55418990	16	1.9	15	93	6	51	40	10	16	33	1.82
55424541--55424712	93	1.8	93	90	2	274	27	27	22	22	1.99
55424533--55424708	46	3.8	46	76	11	189	28	26	21	22	1.99
55424584--55424727	46	3.1	46	70	18	118	29	27	20	22	1.98
55427698--55427802	43	2.4	43	87	0	156	33	24	14	27	1.94
55429472--55429649	81	2.2	82	84	4	227	31	25	16	26	1.96
55429472--55429659	41	4.6	41	82	3	220	32	25	15	26	1.95
55431793--55431968	94	1.9	94	91	0	289	46	5	9	38	1.59
55434076--55434224	57	2.6	57	76	7	151	30	21	18	29	1.97
55434756--55434801	20	2.2	21	88	3	67	32	10	0	56	1.34
55436690--55436804	6	18.7	6	75	18	103	46	16	18	18	1.84
55436674--55436804	31	4.3	31	88	2	185	48	16	17	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55436710--55436804	25	3.6	25	77	22	88	46	16	18	17	1.85
55436741--55436804	19	3.7	19	67	26	61	46	17	17	18	1.84
55436944--55437017	26	2.8	27	87	2	96	37	21	22	17	1.94
55437176--55437240	22	3.0	22	80	8	78	33	23	23	20	1.97
55437685--55437834	27	5.6	27	89	0	228	23	21	21	34	1.97
55437685--55437853	81	2.1	81	85	4	225	24	20	21	34	1.97
55437685--55437887	81	2.5	81	80	4	205	25	17	21	36	1.94
55437819--55437997	81	2.2	81	82	2	216	29	6	21	43	1.78
55437817--55438003	27	6.9	27	80	2	196	30	6	20	42	1.77
55437817--55438012	54	3.6	54	83	1	223	30	6	21	41	1.79
55437819--55438039	27	8.2	27	79	4	187	31	6	21	40	1.79
55437844--55438039	81	2.4	81	83	3	234	31	6	21	40	1.78
55437991--55438054	27	2.4	28	92	5	105	39	7	20	32	1.81
55438065--55438151	27	3.2	27	80	3	86	29	5	20	43	1.75
55442051--55442141	29	3.2	29	81	6	89	28	29	14	27	1.95
55443419--55443819	47	8.4	47	94	2	660	28	31	7	33	1.85
55443598--55443680	27	3.3	27	63	27	72	32	30	4	32	1.79
55443693--55443765	16	4.6	17	69	20	50	31	31	4	32	1.77
55443419--55443819	192	2.1	190	94	1	705	28	31	7	33	1.85
55448692--55448831	31	4.5	31	79	7	124	27	25	15	31	1.96
55448684--55448831	62	2.4	62	82	2	172	27	25	16	30	1.96
55448824--55448936	33	3.5	30	77	16	93	27	23	11	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55448853--55448936	33	2.6	32	80	12	98	25	22	11	40	1.88
55454183--55454253	28	2.5	29	86	2	99	30	30	15	22	1.95
55457346--55458199	47	18.1	47	95	0	1429	31	8	29	29	1.87
55458318--55458396	37	2.1	37	88	4	115	25	18	30	25	1.98
55466411--55466462	25	2.1	25	100	0	104	21	23	26	28	1.99
55468845--55468885	20	2.0	20	90	0	64	36	9	0	53	1.34
55469182--55469223	21	2.0	21	100	0	84	47	14	9	28	1.75
55475053--55475091	19	2.1	19	85	0	51	71	7	5	15	1.26
55475555--55475617	28	2.2	29	80	11	76	33	22	20	23	1.97
55475726--55475782	27	2.1	27	90	0	87	33	8	26	31	1.87
55482855--55482893	19	2.1	19	85	0	51	69	5	7	17	1.32
55483707--55483898	40	4.8	40	77	7	178	26	21	26	26	1.99
55483760--55483914	79	2.0	79	82	7	190	26	20	25	27	1.99
55495319--55495503	79	2.3	81	84	7	236	24	22	27	25	2.00
55495320--55495503	40	4.6	40	82	9	207	25	22	27	25	2.00
55495372--55495536	79	2.1	79	83	6	201	26	20	27	26	1.99
55505843--55505892	26	2.0	24	88	7	73	64	6	0	30	1.18
55505882--55505947	33	1.9	35	84	6	91	63	12	0	24	1.28
55505968--55506000	15	2.1	16	88	11	50	69	0	0	30	0.88
55509173--55509235	27	2.3	27	81	5	74	34	19	15	30	1.93
55509544--55509609	28	2.4	28	87	2	89	19	24	22	33	1.97
55510580--55510636	23	2.5	23	85	0	69	43	0	10	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55510587--55510634	13	3.8	13	76	18	57	39	0	12	47	1.41
55511224--55511274	18	2.8	18	75	18	52	5	29	0	64	1.17
55512335--55512393	26	2.3	25	80	8	64	38	23	10	27	1.87
55512500--55512612	28	4.1	27	81	5	136	18	23	19	38	1.93
55512500--55512612	56	2.0	55	91	1	181	18	23	19	38	1.93
55515038--55515278	94	2.6	94	93	0	392	40	17	10	31	1.84
55522836--55523117	94	3.0	94	96	0	501	39	19	10	30	1.86
55534289--55534582	50	5.8	50	78	3	268	30	24	17	26	1.97
55534350--55534531	101	1.8	101	91	0	301	29	25	19	25	1.98
55535996--55536068	34	2.1	34	82	5	85	35	20	19	24	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290