genome.fa.s7.2.7.7.80.10.50.1000.201.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  201  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64810997--64811371	27	13.9	27	84	1	439	23	20	20	35	1.96
64812906--64813715	272	3.0	272	97	0	1523	36	27	12	23	1.91
64822998--64823056	30	2.0	30	83	6	75	44	8	11	35	1.72
64830724--64830874	40	3.7	39	81	7	158	26	23	26	23	2.00
64835131--64835311	40	4.6	40	84	6	242	24	23	25	25	2.00
64845210--64845270	26	2.3	26	94	2	104	14	8	32	44	1.75
64851154--64851200	10	4.6	10	85	12	60	65	0	0	34	0.93
64851161--64851198	12	3.5	11	89	10	60	65	0	0	34	0.93
64851163--64851206	22	2.0	22	90	0	70	59	2	0	38	1.10
64859100--64859156	29	1.9	30	89	3	89	42	26	7	24	1.80
64860415--64860675	48	5.7	48	77	10	276	31	15	22	30	1.95
64860463--64860624	85	1.9	86	87	1	236	30	14	22	32	1.94
64860389--64860724	133	2.5	133	91	0	555	30	15	23	30	1.95
64860650--64860726	38	2.0	38	92	0	127	28	14	27	29	1.95
64863616--64863675	15	3.9	15	75	14	52	13	13	13	60	1.60
64863616--64863675	30	2.0	31	83	9	79	13	13	13	60	1.60
64866614--64866757	40	3.6	39	85	5	180	25	24	26	23	2.00
64868853--64869190	38	7.9	38	69	22	181	30	15	23	29	1.96
64868883--64869154	48	5.9	48	78	9	289	30	15	22	30	1.95
64868883--64869154	95	3.0	95	74	12	287	30	15	22	30	1.95
64868931--64869102	85	2.0	86	88	1	256	29	15	24	30	1.96
64868853--64869192	133	2.6	133	94	0	590	30	15	23	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64872625--64872751	46	2.8	46	93	0	218	23	32	9	34	1.87
64872771--64872921	47	3.2	47	98	0	284	26	28	10	34	1.90
64872825--64872900	22	3.3	22	67	22	66	25	28	13	32	1.93
64879389--64879726	38	7.9	38	69	22	181	30	15	23	29	1.96
64879419--64879690	48	5.9	48	78	9	289	30	15	22	30	1.95
64879419--64879690	95	3.0	95	74	12	287	30	15	22	30	1.95
64879467--64879638	85	2.0	86	88	1	256	29	15	24	30	1.96
64879389--64879728	133	2.6	133	94	0	590	30	15	23	30	1.96
64883162--64883288	46	2.8	46	93	0	218	23	32	9	34	1.87
64883308--64883458	47	3.2	47	98	0	284	26	28	10	34	1.90
64883362--64883437	22	3.3	22	67	22	66	25	28	13	32	1.93
64886369--64886601	116	2.0	116	93	0	394	36	15	10	38	1.81
64891341--64891493	40	3.8	40	82	0	171	18	30	19	31	1.96
64891375--64891479	20	5.2	20	77	4	104	20	36	17	26	1.94
64905618--64905702	34	2.5	34	84	3	100	23	27	25	23	2.00
64914463--64914655	78	2.5	77	78	3	215	42	10	12	33	1.78
64919709--64919733	10	2.5	10	100	0	50	44	16	0	40	1.47
64923276--64923640	48	7.6	48	87	1	437	26	18	28	26	1.98
64924906--64924955	19	2.6	19	77	0	55	24	24	36	16	1.94
64925404--64925577	67	2.7	66	80	8	212	25	13	8	51	1.70
64933369--64933531	46	3.5	45	76	8	166	29	30	19	20	1.97
64938030--64938259	80	2.9	80	99	0	451	30	16	2	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64940056--64940140	28	3.0	28	84	6	109	28	14	29	28	1.95
64944341--64944383	8	5.4	8	85	0	50	48	18	23	9	1.76
64944606--64944682	29	2.7	29	91	0	118	24	15	25	33	1.95
64944593--64944707	29	4.0	28	79	10	108	27	13	26	32	1.94
64948683--64948999	47	6.7	47	93	0	501	31	8	30	28	1.87
64949118--64949196	37	2.1	37	90	0	122	24	18	31	25	1.98
64959728--64959821	27	3.4	28	89	2	127	26	11	28	32	1.92
64959752--64959835	27	3.0	27	87	5	96	29	11	25	33	1.91
64973026--64973247	40	5.6	40	87	1	304	23	22	26	27	2.00
64978531--64978675	40	3.6	40	85	4	193	23	26	24	25	2.00
64986525--64986692	40	4.2	40	83	4	106	25	27	23	23	2.00
64986548--64986692	40	3.6	40	85	4	193	23	26	24	25	2.00
64991403--64991452	26	2.0	26	84	7	68	32	0	6	62	1.20
64999298--64999336	19	2.1	19	90	0	60	46	12	7	33	1.71
65002210--65002279	31	2.3	31	90	5	106	27	14	15	42	1.86
65002330--65002397	31	2.2	31	94	0	118	44	16	13	26	1.84
65003120--65003584	2	241.0	2	72	8	266	0	59	0	39	1.08
65003120--65003584	8	56.5	8	74	12	311	0	59	0	39	1.08
65004775--65004827	26	2.0	26	96	0	97	37	1	26	33	1.68
65007951--65008227	46	5.9	47	75	8	183	23	28	20	27	1.99
65025679--65025794	6	18.8	6	70	15	67	49	12	18	19	1.79
65025691--65025788	31	3.2	31	71	16	94	47	13	19	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65025730--65025794	25	2.6	25	80	0	85	47	10	18	23	1.79
65025679--65025785	37	2.9	37	81	4	135	48	13	19	18	1.80
65025911--65025997	27	3.3	26	80	4	84	37	18	21	21	1.94
65025948--65026019	27	2.7	27	85	6	85	34	20	23	20	1.96
65026177--65026235	22	2.7	22	81	0	64	32	22	23	22	1.98
65026570--65026690	54	2.2	54	86	5	165	26	20	16	36	1.94
65026600--65026712	27	4.2	27	93	0	172	29	18	15	37	1.91
65026697--65026928	27	8.6	27	79	6	177	32	9	19	38	1.83
65030564--65030618	27	2.0	27	100	0	110	18	3	25	52	1.61
65042007--65042103	28	3.5	28	90	2	133	31	27	13	26	1.94
65042550--65042576	12	2.2	12	100	0	54	40	0	7	51	1.30
65047361--65047393	5	6.8	5	86	6	50	75	0	24	0	0.80
65048281--65048324	19	2.4	18	85	7	54	40	9	0	50	1.34
65050740--65050778	20	2.0	20	100	0	78	35	12	20	30	1.90
65050744--65050789	11	4.4	11	78	10	60	36	15	19	28	1.92
65050839--65051079	24	10.0	24	88	1	331	27	22	20	29	1.99
65053144--65053249	29	3.7	29	84	5	151	19	30	11	38	1.87
65057478--65057515	19	2.0	20	85	15	53	39	23	0	36	1.55
65057745--65057915	93	1.8	93	93	0	297	28	28	21	21	1.98
65057740--65057912	46	3.7	46	79	10	208	29	27	20	21	1.98
65065064--65065101	19	2.0	20	85	15	53	39	23	0	36	1.55
65065331--65065502	94	1.8	94	92	2	292	29	28	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65065326--65065499	46	3.7	46	79	10	201	29	27	20	22	1.98
65066939--65067107	48	3.5	47	90	3	257	25	18	29	26	1.98
65080873--65080908	15	2.3	15	90	4	54	61	8	8	22	1.51
65090644--65090703	27	2.3	26	85	2	75	35	20	23	21	1.96
65090987--65091065	8	9.9	8	88	0	122	6	37	30	25	1.81
65090985--65091068	16	5.2	16	100	0	168	5	36	30	26	1.80
65095360--65095578	39	5.6	40	84	4	252	26	22	18	31	1.97
65095361--65095578	78	2.8	78	83	4	278	27	22	18	31	1.97
65104881--65104948	34	2.0	34	94	0	118	32	7	30	29	1.85
65107577--65107655	37	2.1	37	86	4	106	26	30	17	25	1.97
65107773--65108323	47	11.7	47	97	0	1014	30	29	8	31	1.87
65114668--65114841	47	3.7	46	75	11	183	21	20	27	30	1.98
65115066--65115103	19	2.0	20	85	15	53	36	0	23	39	1.55
65122255--65122427	46	3.7	46	79	10	208	21	20	27	29	1.98
65122252--65122422	93	1.8	93	93	0	297	21	21	28	28	1.98
65122652--65122689	19	2.0	20	85	15	53	36	0	23	39	1.55
65146741--65146779	18	2.3	16	82	8	51	53	0	5	41	1.23
65147647--65147783	43	3.2	43	74	9	127	25	16	27	31	1.96
65152052--65152225	28	6.1	28	74	5	145	29	29	14	25	1.95
65153692--65153720	7	4.1	7	100	0	58	44	41	13	0	1.44
65156111--65156259	27	5.6	27	83	4	176	25	15	28	30	1.96
65156110--65156259	55	2.8	55	84	4	182	25	16	28	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65160108--65160166	29	2.1	28	87	3	82	32	22	16	28	1.96
65166498--65166588	46	2.0	46	86	0	128	27	31	6	34	1.83
65166605--65166680	22	3.3	22	66	28	59	25	27	11	35	1.91
65166568--65166752	47	3.9	47	83	1	201	25	29	10	34	1.89
65170742--65170910	52	3.3	49	82	8	196	26	15	29	28	1.96
65170742--65170919	51	3.5	49	78	11	164	26	16	28	27	1.97
65171380--65171431	27	1.9	27	96	0	95	67	9	5	17	1.38
65173359--65173894	265	2.0	266	91	0	867	33	25	17	23	1.96
65192550--65192719	41	4.2	40	74	15	141	29	27	20	22	1.99
65192608--65192699	42	2.2	41	90	5	141	29	26	18	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290