genome.fa.s7.2.7.7.80.10.50.1000.253.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  253  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82227457--82227494	3	12.7	3	100	0	76	31	0	0	68	0.90
82228253--82228321	33	2.1	33	91	0	111	15	52	17	14	1.75
82229382--82229407	12	2.2	12	100	0	52	23	0	0	76	0.78
82229398--82229532	3	45.0	3	70	8	78	28	9	2	59	1.44
82229478--82229517	20	2.0	21	85	5	55	27	12	2	57	1.48
82229649--82229716	21	3.4	20	78	6	68	27	7	0	64	1.20
82233298--82233345	24	2.0	24	100	0	96	33	4	8	54	1.50
82235519--82235555	19	1.9	19	88	0	56	13	5	2	78	1.03
82236228--82236315	3	29.7	3	69	15	58	28	6	2	62	1.33
82236230--82236275	23	2.0	23	83	8	58	28	6	0	65	1.17
82236395--82236433	12	3.2	12	85	3	51	35	0	10	53	1.35
82236495--82236556	32	1.9	34	90	9	103	32	6	3	58	1.40
82236619--82236701	10	8.7	9	71	20	53	34	1	2	61	1.17
82236617--82236699	21	4.2	19	79	11	69	34	1	2	61	1.17
82236590--82236655	15	4.1	15	75	17	53	36	1	3	59	1.22
82236620--82236741	44	2.8	42	80	13	133	35	2	3	59	1.27
82236547--82236741	24	9.4	20	70	25	95	35	3	4	56	1.34
82236731--82236767	16	2.2	17	90	4	58	24	0	24	51	1.49
82236913--82236973	29	2.1	29	90	6	97	36	3	6	54	1.43
82238413--82238520	26	4.2	26	93	0	189	32	7	24	36	1.83
82240778--82240823	19	2.4	19	100	0	92	56	10	4	28	1.53
82244772--82244818	22	2.1	23	88	4	69	70	4	21	4	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82244763--82244817	27	1.9	30	82	17	73	72	3	18	5	1.18
82246251--82246324	21	3.5	21	84	1	85	13	22	27	36	1.92
82255449--82255969	75	7.0	74	86	5	629	30	17	19	32	1.95
82255935--82256002	33	2.1	33	91	0	109	23	20	19	36	1.95
82255861--82256060	108	1.9	107	92	1	337	28	18	21	32	1.96
82255968--82256117	72	2.0	75	87	3	216	29	18	21	30	1.97
82255786--82256148	182	2.0	182	85	5	493	29	18	19	32	1.95
82256076--82256234	87	1.8	87	86	2	230	29	18	18	33	1.95
82256220--82256255	13	2.8	13	91	0	54	25	11	2	61	1.43
82257891--82258054	3	54.7	3	65	16	63	32	7	2	57	1.39
82257893--82257938	23	2.0	23	83	8	58	28	6	0	65	1.17
82258058--82258096	12	3.2	12	85	3	51	35	0	10	53	1.35
82258213--82258285	20	3.5	20	72	18	58	36	4	5	53	1.43
82258263--82258317	18	3.2	16	78	21	58	34	1	1	61	1.17
82258265--82258317	16	3.2	15	80	17	52	33	1	1	62	1.17
82258227--82258395	59	2.7	65	80	14	176	35	3	2	57	1.31
82258278--82258319	19	2.3	18	91	4	66	35	0	0	64	0.94
82258278--82258395	21	5.5	22	78	15	104	35	2	2	59	1.25
82258240--82258331	11	9.2	9	71	24	53	32	3	3	60	1.29
82258253--82258328	34	2.2	36	79	9	86	35	1	3	59	1.24
82258281--82258405	44	2.8	45	81	11	134	36	2	3	58	1.27
82258576--82258636	29	2.1	29	87	6	88	34	4	6	54	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82262750--82262785	17	2.1	17	100	0	72	36	11	25	27	1.90
82265341--82265365	12	2.1	12	100	0	50	20	8	16	56	1.65
82267898--82267943	20	2.3	20	82	14	60	28	28	17	26	1.98
82267910--82267953	19	2.2	20	84	4	54	34	25	18	22	1.96
82271662--82271787	60	2.1	60	83	5	157	28	25	16	29	1.97
82271780--82271835	19	2.8	20	79	12	62	33	25	16	25	1.95
82277437--82277621	91	2.0	91	100	0	370	47	7	7	37	1.61
82286339--82286383	9	4.8	9	82	17	56	11	4	0	84	0.76
82286339--82286383	20	2.3	20	85	14	60	11	4	0	84	0.76
82289711--82290014	23	13.2	23	84	6	331	24	20	25	30	1.98
82289711--82289992	46	6.1	46	86	6	376	24	20	25	30	1.99
82289722--82290014	69	4.2	69	86	5	396	23	20	25	30	1.98
82294012--82294315	69	4.4	69	87	2	414	23	19	25	30	1.98
82294012--82294315	23	13.2	23	81	5	346	23	19	25	30	1.98
82300517--82300611	6	15.5	6	81	6	93	78	1	4	15	0.95
82300517--82300611	43	2.2	43	84	3	120	78	1	4	15	0.95
82300497--82300611	31	3.8	28	76	15	95	77	0	4	17	0.98
82305994--82306026	13	2.6	13	90	4	50	48	12	0	39	1.40
82309258--82309310	25	2.1	25	89	6	81	35	16	24	22	1.95
82309710--82309765	26	2.2	26	96	0	103	30	7	25	37	1.82
82315922--82315946	11	2.3	11	100	0	50	16	0	8	76	1.02
82315942--82316015	30	2.4	29	80	12	78	37	6	0	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82316426--82316478	23	2.2	26	83	10	67	50	15	13	20	1.76
82323976--82324000	13	1.9	13	100	0	50	32	0	4	64	1.12
82330436--82330753	143	2.2	143	82	3	365	23	20	22	33	1.97
82339673--82339742	31	2.3	30	80	7	79	55	4	4	35	1.39
82340109--82340151	22	2.0	21	86	4	59	69	4	2	23	1.18
82342285--82342334	24	2.1	24	84	0	64	14	40	30	16	1.87
82342377--82342490	58	2.0	56	89	3	174	31	21	22	24	1.98
82342753--82342793	21	1.9	22	90	5	66	12	24	41	21	1.87
82342744--82342794	11	5.1	10	84	13	61	11	27	39	21	1.88
82349363--82350400	42	24.5	42	80	4	876	16	31	32	19	1.94
82349363--82350400	85	12.2	86	79	4	941	16	31	32	19	1.94
82349388--82350377	169	5.8	169	82	5	1043	16	32	31	19	1.94
82350074--82350143	23	3.2	23	60	15	58	22	30	27	20	1.98
82356042--82356162	58	2.1	59	87	4	174	31	22	21	24	1.98
82362837--82363427	47	12.6	47	94	0	1002	29	29	8	33	1.86
82362887--82362965	25	3.3	25	69	16	85	32	29	3	34	1.75
82366486--82366556	24	3.0	24	85	2	99	9	38	33	18	1.84
82366792--82367782	42	23.4	42	82	4	971	15	32	33	18	1.92
82366792--82367782	127	7.8	128	82	3	1035	15	32	33	18	1.92
82366792--82367782	85	11.7	85	81	4	1017	15	32	33	18	1.92
82367514--82367818	43	7.2	43	79	8	275	15	27	36	20	1.93
82374527--82374580	24	2.2	24	86	0	72	12	40	31	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82374613--82374733	58	2.1	58	89	6	183	32	22	21	23	1.98
82381396--82381573	27	6.6	27	84	3	205	29	28	15	26	1.96
82381417--82381572	82	1.9	81	88	3	233	29	28	15	26	1.96
82393017--82393136	58	2.1	59	88	4	181	31	24	20	24	1.98
82393533--82393608	24	3.2	24	83	3	91	14	39	27	18	1.90
82393797--82394643	85	10.0	85	84	4	937	15	32	33	18	1.92
82393822--82394643	127	6.5	128	86	4	931	15	32	33	18	1.92
82393847--82394643	212	3.8	210	86	4	975	15	32	33	18	1.92
82401471--82401504	11	3.1	11	95	0	59	32	44	0	23	1.54
82402020--82402191	93	1.8	93	94	0	308	29	29	20	21	1.98
82402013--82402188	46	3.8	46	79	12	207	30	28	19	21	1.98
82402064--82402207	46	3.1	44	76	15	141	29	28	20	22	1.98
82409574--82409713	46	3.0	44	73	14	115	30	28	18	22	1.98
82418712--82418824	58	1.9	58	89	3	174	28	21	23	27	1.99
82424802--82424855	24	2.2	24	93	0	90	7	40	35	16	1.77
82425042--82426097	42	24.9	42	83	4	1081	16	32	32	18	1.93
82425042--82426097	169	6.2	170	84	3	1202	16	32	32	18	1.93
82425042--82426097	127	8.3	128	82	4	1081	16	32	32	18	1.93
82425026--82426097	85	12.7	85	82	5	962	16	32	32	18	1.93
82432294--82432414	58	2.1	59	88	1	181	31	23	21	23	1.98
82432809--82432882	24	3.1	24	92	0	121	8	39	35	17	1.79
82433097--82433700	42	14.3	42	82	4	556	16	31	32	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82433097--82433658	169	3.3	167	83	4	655	17	32	32	18	1.94
82439449--82439527	37	2.1	37	90	0	122	25	31	18	24	1.98
82439645--82439802	49	3.2	49	96	2	284	29	30	8	31	1.86
82440073--82440130	24	2.5	23	81	16	66	32	5	0	62	1.18
82444009--82444202	96	2.0	96	89	2	300	35	16	34	13	1.88
82448103--82448463	177	2.0	175	86	5	503	21	26	26	26	1.99
82448898--82449018	58	2.1	59	88	1	181	32	23	19	23	1.98
82449521--82449553	16	2.1	16	88	5	50	12	6	15	66	1.42
82454576--82454698	24	5.1	24	87	0	174	10	40	31	17	1.83
82454576--82454698	48	2.6	48	90	0	192	10	40	31	17	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290