genome.fa.s7.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  99  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30404580--30404951	176	2.1	177	90	2	595	34	18	19	26	1.95
30404994--30405115	44	2.8	44	78	8	133	34	16	21	27	1.95
30412621--30412661	6	6.5	6	86	8	55	51	2	2	43	1.28
30412621--30412654	13	2.6	13	90	0	59	52	0	2	44	1.16
30417116--30417193	31	2.7	27	80	18	86	10	10	1	78	1.03
30417116--30417182	31	2.2	30	89	7	109	8	10	1	79	1.01
30417125--30417193	31	2.3	31	87	7	99	11	10	1	76	1.08
30417153--30417199	21	2.2	22	81	11	53	12	10	0	76	1.02
30417425--30417471	20	2.3	20	86	13	62	70	0	6	23	1.10
30417523--30417549	14	1.9	14	100	0	54	55	0	0	44	0.99
30417523--30417676	37	4.3	36	75	8	138	56	2	1	39	1.21
30417628--30417685	22	2.5	22	80	5	62	58	1	0	39	1.08
30417711--30417765	9	5.9	9	80	6	65	80	3	3	12	0.98
30417786--30417827	21	2.0	22	81	13	52	78	0	9	11	0.96
30417784--30417867	30	2.9	29	87	10	118	78	1	10	9	1.02
30417797--30417854	16	3.8	16	76	17	68	77	1	10	10	1.06
30418845--30418879	17	2.1	17	89	10	54	45	2	0	51	1.16
30420245--30420340	32	3.1	31	75	19	94	43	12	8	35	1.73
30424271--30424295	3	8.3	3	100	0	50	36	0	0	64	0.94
30427028--30427079	6	8.2	6	79	8	50	78	0	21	0	0.74
30427042--30427082	21	2.0	21	95	0	73	78	0	21	0	0.76
30427036--30427082	13	3.5	13	75	13	51	78	0	21	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30436707--30436751	24	2.0	24	86	8	67	44	17	6	31	1.75
30440074--30440104	5	6.2	5	100	0	62	41	58	0	0	0.98
30440146--30440185	20	2.0	20	85	0	53	75	7	2	15	1.14
30440203--30440279	9	8.6	9	84	5	102	27	7	19	45	1.77
30448625--30448657	17	2.0	17	88	5	50	30	12	6	51	1.63
30449462--30449488	13	2.1	13	100	0	54	14	33	37	14	1.88
30454016--30454082	16	3.6	18	76	15	57	49	4	1	44	1.31
30454010--30454052	16	2.6	16	81	7	50	46	6	2	44	1.43
30454186--30454213	13	2.2	13	100	0	56	42	10	7	39	1.67
30455081--30455131	22	2.3	23	79	6	59	41	1	1	54	1.22
30456655--30456803	46	3.2	46	79	7	122	24	19	19	36	1.95
30456668--30456769	46	2.2	47	84	5	136	24	18	21	35	1.96
30459206--30459277	31	2.2	33	80	11	87	58	9	1	30	1.39
30464558--30464591	16	2.1	16	100	0	68	17	11	29	41	1.85
30466320--30466632	158	2.0	158	91	1	511	26	18	28	27	1.98
30466554--30466717	44	3.6	45	72	14	124	26	18	29	24	1.98
30475423--30475454	17	1.9	16	93	6	55	34	18	31	15	1.93
30476857--30476943	45	1.9	45	83	0	111	43	17	18	20	1.88
30478247--30478294	21	2.3	21	85	0	60	27	29	29	14	1.95
30484500--30484592	40	2.3	40	81	7	109	30	23	13	32	1.94
30486030--30486060	8	3.9	8	100	0	62	51	25	9	12	1.70
30485990--30486091	50	2.0	52	86	7	147	42	28	5	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30486590--30486617	3	9.3	3	100	0	56	67	0	0	32	0.91
30491647--30491698	22	2.5	21	78	9	54	5	7	7	78	1.08
30491664--30491707	21	2.1	21	82	0	52	9	11	2	77	1.08
30492595--30492656	29	2.1	29	100	0	124	30	0	12	56	1.37
30495901--30495970	30	2.3	30	90	0	104	25	30	21	22	1.99
30499747--30499788	21	2.0	21	95	0	75	50	23	11	14	1.76
30522308--30522438	71	1.9	67	84	9	174	40	12	13	32	1.83
30534169--30534275	44	2.5	44	83	6	121	30	25	19	24	1.98
30541369--30541513	43	3.4	43	81	6	161	31	24	17	25	1.97
30541369--30541530	86	1.9	85	81	11	197	32	24	18	25	1.97
30554780--30554817	17	2.2	17	90	9	60	68	2	0	28	1.03
30571417--30571526	42	2.6	42	81	4	132	24	19	26	30	1.98
30574881--30575081	27	7.4	27	86	3	251	30	27	14	27	1.95
30581967--30582106	42	3.2	44	79	10	148	25	17	26	31	1.97
30581963--30582137	86	2.0	85	80	13	191	24	16	26	33	1.95
30584594--30584800	53	3.8	54	76	1	200	19	22	19	38	1.93
30590647--30590714	19	3.4	19	68	26	50	22	13	25	39	1.90
30590639--30590725	43	2.0	43	88	0	129	22	13	24	39	1.91
30599135--30599174	18	2.2	19	86	4	55	37	10	12	40	1.77
30602925--30603019	44	2.0	48	88	11	144	37	14	13	33	1.86
30610688--30610762	25	3.0	25	78	2	87	36	14	6	42	1.72
30625792--30625834	16	2.7	16	86	13	70	48	11	23	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30626066--30626192	29	4.5	28	78	9	141	27	14	33	24	1.94
30632886--30633103	45	4.8	45	96	0	391	29	26	22	22	1.99
30633859--30634000	47	3.0	47	89	3	216	42	16	12	28	1.85
30636989--30637053	32	2.0	33	84	3	87	27	12	24	35	1.91
30639440--30639479	20	2.0	22	85	14	59	32	5	15	47	1.66
30673057--30673097	20	2.0	20	95	0	73	21	43	7	26	1.79
30674980--30675020	11	3.7	11	84	15	50	36	0	0	63	0.95
30681614--30681760	60	2.5	59	80	9	138	42	4	12	40	1.63
30687797--30687970	46	3.8	46	77	10	192	22	20	28	28	1.99
30687791--30687963	93	1.9	93	91	0	283	22	20	28	27	1.99
30692470--30692520	15	3.4	15	76	17	52	33	0	5	60	1.21
30702386--30702457	6	11.8	6	83	14	94	18	1	2	77	0.96
30702422--30702468	18	2.5	19	86	3	51	14	6	2	76	1.08
30708084--30708135	24	2.2	24	85	0	68	40	1	5	51	1.37
30718544--30718610	22	3.1	22	75	14	68	34	8	5	50	1.58
30723087--30723124	20	2.1	18	85	14	51	31	0	0	68	0.90
30723165--30723218	26	2.0	27	89	3	83	35	5	1	57	1.33
30723415--30723478	17	3.9	16	80	12	76	28	7	0	64	1.21
30724743--30724858	20	5.7	20	70	18	87	37	2	5	55	1.36
30724742--30724780	19	2.1	19	85	0	51	41	0	2	56	1.13
30727806--30727845	13	3.1	13	85	0	53	22	32	25	20	1.98
30729890--30729941	23	2.3	23	83	9	63	63	3	11	21	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30731958--30732101	55	2.6	54	81	4	164	13	26	31	28	1.94
30741516--30741550	18	1.9	18	94	0	61	45	11	14	28	1.79
30742543--30742624	42	2.0	42	80	9	96	23	29	23	24	1.99
30748713--30748862	67	2.2	67	81	8	171	32	17	28	21	1.96
30748737--30748920	67	2.8	64	77	8	194	29	17	29	22	1.97
30754841--30755010	86	2.0	86	96	0	313	47	17	4	30	1.68
30759402--30759486	43	2.0	43	97	0	161	37	17	10	34	1.84
30760828--30760939	57	2.0	57	100	0	224	37	28	8	25	1.86
30765283--30765384	36	2.8	36	90	0	168	36	21	13	28	1.92
30785544--30785621	20	3.9	20	86	0	102	38	11	19	30	1.87
30785544--30785621	40	2.0	40	94	0	138	38	11	19	30	1.87
30785670--30785742	26	2.9	25	91	4	119	26	26	21	26	2.00
30793609--30793698	20	4.6	20	84	5	114	37	11	18	32	1.86
30793617--30793698	40	2.0	40	90	4	130	37	12	19	30	1.88
30793752--30793824	26	2.9	25	89	4	119	26	26	21	26	2.00
30803721--30803787	23	2.9	23	80	6	73	29	11	13	44	1.79
30806432--30806610	28	6.4	28	72	7	139	21	1	25	51	1.55
30807149--30807234	40	2.2	40	89	0	136	37	18	20	23	1.94
30809228--30809274	23	2.1	23	88	4	69	21	12	12	53	1.72
30810154--30810196	18	2.4	18	92	0	68	51	6	13	27	1.67
30810341--30810443	9	11.4	9	77	12	79	46	19	0	33	1.50
30810375--30810442	34	2.0	34	82	5	84	48	20	0	30	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30818171--30818220	26	1.9	26	83	0	64	40	22	2	36	1.65
30818151--30818220	13	5.3	13	68	1	50	35	24	4	35	1.75
30818316--30818530	46	4.7	46	90	1	297	22	22	13	41	1.89
30818908--30818956	23	2.1	23	84	3	62	34	26	22	16	1.95
30818921--30819036	23	5.0	23	70	12	74	31	23	28	17	1.97
30821117--30821165	21	2.5	18	73	20	53	48	4	0	46	1.20
30822666--30822694	14	2.1	14	93	6	51	34	0	10	55	1.34
30823131--30823180	21	2.4	21	89	0	73	34	16	46	4	1.65
30823518--30823765	43	6.0	43	70	14	180	29	16	22	31	1.96
30823955--30824019	21	3.2	20	74	10	51	61	9	0	29	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290