genome.fa.s7.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  129  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40428761--40428930	41	4.2	40	73	18	143	28	27	21	22	1.99
40432066--40432094	14	2.0	15	93	6	51	51	20	0	27	1.47
40434820--40434987	44	3.6	44	76	10	133	26	21	29	22	1.99
40434957--40435043	42	2.1	42	97	0	165	24	26	21	27	1.99
40452509--40452671	39	4.2	38	87	4	202	19	23	30	26	1.98
40452566--40452699	39	3.4	38	86	4	171	19	25	30	24	1.98
40466752--40466943	40	4.8	40	81	0	231	26	27	21	24	1.99
40466752--40466944	80	2.4	80	91	0	314	26	27	21	24	1.99
40473353--40473541	40	4.7	40	81	0	225	25	28	21	24	1.99
40473325--40473542	80	2.7	79	89	2	312	26	27	21	24	1.99
40477601--40477811	46	4.5	46	74	10	169	29	19	28	21	1.98
40477642--40477862	47	4.7	47	76	7	191	30	19	28	21	1.98
40487234--40487329	23	4.1	23	90	4	131	31	20	19	28	1.97
40487234--40487329	46	2.1	47	92	2	158	31	20	19	28	1.97
40487389--40487446	20	2.9	20	89	0	89	36	18	10	34	1.85
40493091--40493152	26	2.4	26	88	0	88	38	14	8	38	1.76
40493281--40493325	6	7.5	6	94	0	63	15	24	4	55	1.59
40497286--40497351	34	1.9	34	87	0	96	28	7	22	40	1.81
40503602--40503924	161	2.0	161	98	0	628	42	17	10	30	1.83
40532006--40532158	37	4.2	37	80	5	159	30	22	21	25	1.99
40532006--40532188	74	2.5	73	83	7	237	30	21	22	25	1.99
40534327--40534429	34	3.0	34	91	2	163	50	5	18	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40534569--40534612	16	2.8	15	83	10	52	47	0	11	40	1.39
40534540--40534611	32	2.3	31	85	9	92	44	0	11	44	1.39
40535362--40535512	40	3.8	40	80	0	131	21	26	16	35	1.94
40542273--40542306	16	2.1	16	94	0	59	35	5	14	44	1.70
40543392--40543502	54	2.1	54	81	6	127	27	23	30	18	1.98
40546075--40546128	24	2.4	22	78	6	54	59	7	3	29	1.42
40552737--40552767	3	10.3	3	100	0	62	35	0	0	64	0.94
40553736--40553764	12	2.4	12	100	0	58	27	17	17	37	1.92
40554706--40554788	41	2.0	41	92	0	139	28	13	22	34	1.92
40555740--40555800	22	2.7	22	69	19	54	29	0	6	63	1.19
40559553--40559585	13	2.5	13	85	14	50	21	0	0	78	0.75
40559543--40559600	21	2.7	22	72	20	59	27	0	6	65	1.18
40580506--40580557	27	1.9	27	84	0	68	65	1	25	7	1.30
40592563--40592769	53	3.8	55	78	1	195	19	24	16	39	1.92
40592575--40592769	55	3.6	53	77	2	183	18	24	17	38	1.92
40595792--40596424	44	13.9	44	76	11	433	31	17	20	30	1.96
40595792--40596424	88	7.0	88	73	13	487	31	17	20	30	1.96
40595792--40596424	132	4.6	132	74	13	537	31	17	20	30	1.96
40596094--40596214	51	2.4	49	81	12	129	33	17	20	28	1.95
40598247--40598275	14	2.1	14	100	0	58	10	6	34	48	1.64
40601829--40601880	23	2.3	22	75	21	54	9	23	1	65	1.32
40601874--40601912	18	2.2	18	85	0	51	12	23	2	61	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40605276--40605358	41	2.0	41	92	0	139	34	22	13	28	1.92
40606300--40606328	12	2.4	12	100	0	58	37	17	17	27	1.92
40607296--40607323	3	9.3	3	100	0	56	64	0	0	35	0.94
40614476--40614686	106	2.0	106	100	0	422	30	8	16	45	1.76
40617037--40617103	33	2.0	33	100	0	134	5	23	14	55	1.62
40628306--40628336	7	4.4	7	95	0	53	22	0	41	35	1.54
40629455--40629653	63	3.2	62	73	8	179	21	21	30	26	1.98
40636350--40636614	132	2.0	132	94	0	467	40	13	7	38	1.75
40650058--40650216	41	3.9	40	76	4	140	33	27	14	25	1.94
40650058--40650248	81	2.4	81	82	5	217	32	26	15	25	1.95
40656543--40656569	13	2.1	13	100	0	54	33	29	29	7	1.85
40657265--40657447	41	4.5	41	82	4	203	33	25	15	25	1.95
40657265--40657447	81	2.3	81	84	3	226	33	25	15	25	1.95
40658247--40658275	13	2.1	14	93	6	51	37	20	0	41	1.53
40658363--40658427	34	1.9	34	100	0	130	27	20	12	40	1.88
40658868--40658912	15	2.7	18	74	22	53	42	37	0	20	1.52
40663612--40663695	44	1.9	44	90	4	134	26	10	15	47	1.78
40667385--40667634	41	6.1	41	80	2	270	34	26	20	18	1.95
40667393--40667634	123	2.0	123	86	1	342	35	26	20	18	1.95
40667571--40667687	55	2.1	55	87	3	162	34	29	20	15	1.93
40667612--40667650	16	2.4	16	95	0	69	33	30	23	12	1.92
40667625--40667772	76	1.9	77	84	1	199	35	27	20	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40667622--40667752	38	3.4	38	84	1	172	33	29	21	16	1.95
40669880--40670089	96	2.2	96	83	3	262	33	15	22	28	1.95
40671574--40671680	33	3.2	33	70	18	78	43	14	13	28	1.83
40671572--40671723	68	2.3	66	86	4	214	43	14	14	27	1.84
40671574--40671740	34	5.0	34	73	16	134	43	14	14	28	1.84
40671573--40671742	68	2.5	67	84	8	211	43	14	14	27	1.84
40673765--40673868	54	1.9	54	96	0	190	34	12	21	31	1.90
40676532--40676614	42	2.0	42	97	0	157	28	4	9	56	1.52
40679758--40679784	13	2.1	13	100	0	54	48	22	0	29	1.51
40683377--40683479	42	2.4	44	79	6	113	28	15	23	33	1.95
40685531--40685701	93	1.8	93	96	0	315	28	28	21	21	1.99
40685526--40685698	46	3.7	46	78	13	210	28	27	21	21	1.99
40688077--40688131	15	3.7	15	81	13	78	60	10	16	12	1.60
40691097--40691266	93	1.8	92	96	1	313	28	28	21	21	1.99
40691091--40691275	45	4.0	46	74	17	159	28	29	20	22	1.98
40692565--40692607	23	1.9	22	85	4	59	18	4	25	51	1.66
40697157--40697310	45	3.4	45	89	1	229	22	14	27	35	1.93
40697157--40697333	90	2.0	90	86	0	246	22	14	28	34	1.93
40732743--40732831	39	2.3	39	82	3	99	14	33	15	35	1.88
40732773--40732859	35	2.4	36	82	7	95	13	32	18	35	1.90
40734628--40734738	27	4.2	26	88	5	150	38	23	23	14	1.91
40736170--40736270	24	4.2	24	93	0	166	19	41	3	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40740790--40740834	16	3.0	15	83	6	56	22	2	8	66	1.30
40741802--40741912	27	4.2	26	86	5	141	38	22	23	15	1.92
40743344--40743436	24	3.9	24	91	0	150	22	39	4	33	1.74
40760633--40760687	20	2.8	21	81	18	82	20	3	0	76	0.94
40760630--40760732	12	9.1	11	72	17	70	19	4	1	73	1.11
40760638--40760680	18	2.4	17	92	7	68	18	4	0	76	0.95
40760630--40760684	28	2.0	28	89	7	85	20	3	0	76	0.94
40760633--40760727	38	2.5	38	83	8	104	18	5	2	73	1.12
40763433--40763465	13	2.6	13	90	4	50	39	0	12	48	1.40
40768026--40768263	28	8.5	28	94	0	379	26	11	27	34	1.91
40775942--40776169	28	8.4	28	87	7	301	26	11	28	33	1.91
40779546--40779749	27	7.6	27	87	3	250	30	28	14	26	1.95
40779546--40779748	108	1.9	108	89	3	320	30	28	14	26	1.95
40786643--40786877	28	8.4	28	93	0	355	27	11	27	34	1.90
40798515--40798580	25	2.6	25	87	0	87	30	24	19	25	1.98
40807267--40807328	32	1.9	32	93	0	106	38	25	14	20	1.91
40809751--40809823	36	2.0	36	97	0	137	30	13	28	27	1.94
40831822--40831943	27	4.5	27	81	2	129	29	15	19	35	1.93
40832343--40832402	18	3.3	18	83	0	75	20	20	15	45	1.86
40850234--40850277	22	1.9	24	90	9	74	40	6	2	50	1.42
40851215--40851445	115	2.0	115	95	0	417	44	14	10	31	1.79
40859440--40859658	106	2.1	106	99	0	429	49	10	10	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40865045--40865211	46	3.6	46	83	8	162	28	19	27	24	1.98
40865093--40865355	142	1.9	138	81	6	314	26	19	30	23	1.98
40871932--40872134	27	7.6	27	86	3	257	26	14	28	30	1.95
40879863--40880019	27	5.8	27	84	5	174	27	14	28	29	1.95
40896097--40896301	27	7.6	27	85	3	250	26	14	28	30	1.95
40902199--40902259	30	2.0	30	83	0	77	31	22	8	37	1.84
40903151--40903249	51	1.9	51	97	0	189	30	23	15	31	1.95
40904859--40904940	43	1.9	43	94	0	146	37	14	9	37	1.79
40935252--40935286	18	1.9	18	88	11	54	71	0	0	28	0.86
40935540--40935615	22	3.7	21	76	15	68	40	17	6	35	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290