genome.fa.s7.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  112  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34731471--34731507	14	2.7	13	88	12	56	56	10	16	16	1.66
34730983--34731578	87	6.7	86	79	11	455	36	18	15	28	1.92
34731485--34731873	73	5.3	73	85	6	511	34	19	16	29	1.94
34732003--34732248	75	3.3	75	84	6	367	32	22	15	29	1.94
34732192--34732544	100	3.7	89	81	12	291	38	18	16	26	1.92
34731558--34732464	407	2.2	399	81	9	1093	36	19	15	28	1.93
34732448--34732492	13	3.4	13	84	6	63	71	6	8	13	1.31
34732276--34732564	100	2.9	101	86	3	397	40	18	16	24	1.91
34732472--34732637	73	2.2	74	87	2	226	31	20	18	28	1.96
34732547--34732717	92	1.9	91	91	3	281	33	19	18	28	1.96
34733543--34733629	42	2.1	43	84	4	115	14	20	13	50	1.77
34739381--34739415	16	2.3	15	90	5	52	62	2	2	31	1.24
34739529--34739635	22	4.9	20	71	17	63	57	5	6	30	1.48
34739566--34739773	25	8.5	23	69	18	102	55	4	6	34	1.45
34739529--34739661	24	5.9	22	73	14	78	56	5	6	32	1.46
34739640--34739705	14	4.7	14	75	18	57	56	1	4	37	1.29
34739721--34739779	22	2.7	22	84	5	66	59	3	5	32	1.36
34740247--34740300	18	3.3	18	66	28	57	22	7	48	22	1.75
34740242--34740340	30	3.3	30	89	0	162	18	6	48	27	1.71
34740869--34740908	21	1.9	21	89	0	62	30	30	10	30	1.90
34741030--34741562	90	5.9	90	79	9	447	37	18	15	28	1.92
34741366--34741398	14	2.4	14	94	0	57	63	6	12	18	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34741146--34741634	182	2.8	176	78	11	487	36	19	15	28	1.92
34741009--34741562	87	6.2	86	75	14	385	38	18	15	27	1.91
34741469--34741858	73	5.3	74	82	7	481	33	20	17	29	1.95
34741491--34741858	146	2.5	146	94	0	628	32	20	17	30	1.95
34741949--34742321	146	2.5	148	83	5	448	31	20	17	30	1.95
34742511--34742569	14	4.4	14	91	4	86	66	6	13	13	1.44
34742410--34742637	114	2.0	114	85	0	312	42	17	16	24	1.89
34742549--34742717	73	2.3	74	84	2	214	33	20	18	28	1.96
34750590--34750643	18	3.3	18	66	28	57	22	7	48	22	1.75
34750585--34750683	30	3.3	30	89	0	162	17	6	48	28	1.70
34750618--34750673	18	3.4	18	65	27	52	19	7	44	28	1.77
34752715--34752757	21	2.0	22	86	4	61	34	0	0	65	0.93
34752713--34752757	11	4.1	11	82	8	56	35	0	0	64	0.94
34764148--34764197	21	2.5	20	83	9	57	64	2	2	32	1.16
34764303--34764377	29	2.5	29	80	10	80	33	13	9	44	1.76
34765203--34765237	15	2.2	16	90	5	54	51	0	0	48	1.00
34765196--34765240	16	2.8	17	80	13	58	53	0	0	46	1.00
34765220--34765258	20	2.0	20	85	10	53	51	0	2	46	1.14
34766488--34766519	15	2.1	15	100	0	64	50	0	0	50	1.00
34771463--34771494	13	2.5	13	94	0	55	21	31	40	6	1.78
34771990--34772067	9	8.4	9	73	8	50	38	6	0	55	1.26
34772035--34772085	3	17.0	3	84	11	61	33	0	1	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34772148--34772334	41	4.7	40	67	21	113	31	3	3	61	1.29
34772188--34772240	22	2.4	23	78	15	58	32	0	5	62	1.19
34772038--34772421	131	2.9	130	82	9	424	32	2	4	60	1.31
34772324--34772364	21	1.9	22	85	14	59	34	0	9	56	1.32
34772339--34772382	15	2.9	14	86	10	52	34	2	6	56	1.38
34772339--34772382	16	2.8	16	86	10	56	34	2	6	56	1.38
34772045--34772428	122	2.9	130	78	16	405	32	3	4	60	1.33
34780428--34780651	104	2.2	104	93	1	378	17	19	31	31	1.95
34780681--34780732	26	2.0	26	92	0	86	15	21	34	28	1.94
34780570--34780720	72	2.1	72	91	2	243	23	16	29	30	1.96
34787511--34787734	104	2.2	104	93	1	378	17	19	31	31	1.95
34787653--34787804	71	2.1	72	91	1	243	23	17	28	30	1.97
34803543--34803580	11	3.5	11	82	7	51	44	5	0	50	1.24
34805947--34806070	46	2.7	44	82	10	144	29	20	28	21	1.98
34809857--34809911	15	3.7	15	79	20	53	12	7	18	61	1.53
34812458--34812683	47	4.7	48	74	16	145	26	19	28	24	1.99
34821177--34821247	3	23.7	3	85	5	90	35	4	0	60	1.16
34821285--34821362	23	3.1	25	72	24	67	35	1	3	58	1.24
34821297--34821362	23	2.8	23	77	13	71	34	1	3	60	1.21
34821482--34821537	23	2.6	23	83	8	64	33	3	5	57	1.39
34821482--34821558	23	3.4	23	77	12	61	35	3	6	54	1.45
34821589--34821747	26	6.2	25	76	11	144	35	6	3	53	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34821792--34821832	11	3.9	11	78	12	50	36	2	7	53	1.42
34825766--34825820	22	2.5	22	90	3	83	27	20	3	49	1.65
34834209--34834238	14	2.1	14	100	0	60	20	6	6	66	1.38
34834070--34834983	85	10.8	85	74	12	602	28	16	19	36	1.93
34834294--34834323	14	2.1	14	93	0	51	16	10	6	66	1.41
34834472--34834520	14	3.6	14	83	5	64	24	10	4	61	1.45
34834500--34834660	74	2.2	73	81	5	180	29	14	16	39	1.88
34834814--34834843	14	2.1	14	93	0	51	16	6	6	70	1.31
34836885--34836946	3	20.7	3	83	6	72	35	4	0	59	1.19
34836984--34837084	23	4.2	25	70	25	74	35	1	3	58	1.28
34836985--34837078	47	2.0	45	84	10	118	36	2	4	57	1.30
34837197--34837252	23	2.5	22	80	8	60	33	3	7	55	1.45
34837214--34837259	21	2.1	23	84	8	60	32	2	6	58	1.36
34837304--34837462	26	6.2	25	75	11	126	35	7	3	52	1.48
34837506--34837546	11	3.9	11	78	12	50	36	2	7	53	1.42
34838882--34838986	27	3.9	27	87	3	133	37	20	23	18	1.94
34847306--34847335	8	3.8	8	90	0	51	3	26	26	43	1.70
34848513--34848620	26	4.2	26	93	0	189	36	25	5	32	1.79
34856124--34856185	31	2.0	31	90	0	97	30	25	17	25	1.97
34856155--34856315	46	3.5	46	72	13	159	30	27	18	23	1.98
34874191--34874234	23	2.0	23	86	8	65	52	6	13	27	1.66
34874191--34874247	23	2.4	23	82	11	62	52	5	12	29	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34874296--34874343	20	2.3	20	89	3	69	60	0	4	35	1.16
34874296--34874355	20	3.0	20	87	2	66	60	1	5	33	1.29
34874385--34874433	24	2.0	24	84	8	62	57	8	6	28	1.52
34874547--34874582	3	12.0	3	93	0	63	63	0	2	33	1.08
34874682--34874738	3	18.3	3	82	7	69	63	5	0	31	1.17
34884341--34884406	27	2.7	24	77	20	66	59	0	6	34	1.22
34884362--34884411	22	2.3	22	89	3	75	60	0	4	36	1.16
34884362--34884423	22	2.9	22	87	2	72	59	1	4	33	1.28
34884453--34884501	24	2.0	24	84	8	62	55	8	6	30	1.54
34884615--34884659	3	15.0	3	95	0	81	64	0	2	33	1.06
34884754--34884803	23	2.1	25	88	7	77	58	8	2	32	1.39
34884757--34884813	3	18.3	3	75	7	51	59	7	1	31	1.34
34888298--34888467	46	3.6	45	78	15	152	27	18	31	22	1.97
34888345--34888506	46	3.5	47	80	5	159	27	17	30	23	1.97
34895814--34896030	46	4.6	46	79	13	219	27	18	30	22	1.98
34895814--34896077	47	5.6	48	76	10	183	28	18	29	23	1.98
34895814--34896071	140	1.8	140	84	4	351	28	18	29	24	1.98
34897454--34897506	28	1.9	28	84	3	72	52	0	5	41	1.25
34897459--34897516	27	2.1	28	87	6	84	50	0	6	43	1.29
34898016--34898073	26	2.2	26	90	0	89	34	18	17	29	1.94
34902083--34902230	31	4.8	31	89	1	192	28	29	15	27	1.96
34902083--34902230	62	2.4	62	89	0	215	28	29	15	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34902210--34902334	50	2.5	51	89	2	189	28	24	12	34	1.92
34905990--34906021	5	6.4	5	92	0	55	78	0	3	18	0.89
34912790--34912832	19	2.3	18	92	7	77	44	13	2	39	1.57
34920324--34920371	19	2.6	19	86	3	71	35	2	12	50	1.52
34921697--34921777	40	2.0	40	100	0	162	22	19	23	34	1.96
34922951--34923336	196	2.0	197	97	0	729	28	19	17	34	1.94
34923763--34923808	21	2.2	22	80	11	60	26	26	36	10	1.89
34925008--34925194	48	3.9	48	80	4	216	26	27	18	27	1.98
34925004--34925194	96	2.0	96	85	4	260	25	27	18	27	1.98
34951873--34952194	48	6.8	46	75	8	258	23	28	20	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290