genome.fa.s7.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  195  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62675651--62676070	2	237.5	2	63	25	110	54	0	0	44	1.08
62675640--62676071	87	5.1	83	71	20	220	54	0	0	44	1.08
62675845--62675973	42	3.0	43	75	17	124	58	0	0	41	0.98
62675884--62676088	81	2.5	81	79	13	190	53	0	0	44	1.13
62676100--62676244	22	6.4	23	69	21	94	40	0	0	59	0.97
62676099--62676244	66	2.1	66	79	17	156	40	0	0	59	0.97
62676196--62676498	29	10.0	30	67	18	105	53	0	0	45	1.09
62676309--62676382	21	3.4	21	71	19	62	58	0	0	41	0.98
62676328--62676420	48	1.9	48	81	12	111	58	0	0	41	0.98
62676366--62676891	80	6.4	79	68	21	200	53	0	0	46	1.03
62676451--62676825	41	9.3	41	66	19	143	54	0	0	45	1.02
62676563--62676601	20	2.0	20	90	9	64	69	0	0	30	0.89
62676596--62676883	20	14.4	20	68	20	99	53	0	0	46	1.03
62676609--62676741	38	3.7	35	69	22	89	54	0	0	45	1.00
62676610--62677041	59	7.2	59	67	20	165	53	0	0	45	1.04
62676838--62677138	117	2.6	115	75	16	262	51	0	0	47	1.03
62676643--62678715	40	47.7	43	64	24	142	51	0	0	47	1.06
62677402--62677461	28	2.2	26	88	8	84	51	0	0	48	1.00
62677584--62677944	29	11.8	31	66	23	105	53	0	0	46	1.00
62677606--62678045	44	10.3	43	67	25	156	54	0	0	45	0.99
62677599--62678649	80	12.7	80	66	22	271	52	0	0	46	1.05
62677906--62678034	51	2.5	48	76	17	118	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62677786--62678455	114	5.6	117	68	20	283	54	0	0	45	1.03
62678049--62678100	3	17.7	3	76	11	54	42	0	0	57	0.98
62677676--62678073	176	2.2	176	79	14	406	53	0	0	46	1.00
62677585--62678414	180	4.6	178	72	19	436	53	0	0	46	1.03
62677785--62678313	200	2.7	200	75	18	455	53	0	0	45	1.01
62677945--62678339	152	2.5	154	78	15	370	53	0	0	46	1.02
62677582--62678655	36	29.2	37	65	25	147	52	0	0	46	1.05
62678282--62678697	5	85.4	5	64	24	67	51	0	0	46	1.12
62676293--62679139	23	121.2	24	64	25	218	51	0	0	47	1.06
62678473--62678750	76	3.7	76	76	14	186	48	0	0	49	1.11
62677676--62678651	50	19.2	50	63	24	95	52	0	0	46	1.06
62678586--62678679	33	2.8	32	80	9	100	51	0	0	48	1.00
62678555--62678653	2	55.5	2	66	22	51	54	0	0	45	0.99
62678691--62678773	25	3.4	25	80	11	91	46	0	0	53	1.00
62678668--62678920	25	10.4	25	66	23	66	51	0	0	47	1.07
62678773--62678843	25	2.6	28	78	13	85	52	0	1	46	1.09
62678881--62678919	20	1.9	21	89	5	62	56	0	0	43	0.99
62678853--62678915	31	2.1	30	80	13	76	60	0	0	39	0.97
62678935--62678987	24	2.2	24	83	6	63	50	0	0	49	1.00
62678975--62679072	2	55.5	2	67	23	51	50	0	0	50	1.00
62678930--62679068	7	19.7	7	70	20	51	50	0	0	49	1.00
62678928--62679159	55	4.1	56	75	13	178	49	0	0	50	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62678980--62679115	7	20.4	7	67	20	69	47	0	0	52	1.05
62678985--62679195	71	2.9	72	80	13	197	47	0	1	50	1.09
62678928--62679125	18	11.9	16	67	24	58	48	0	0	50	1.04
62679040--62679227	67	2.9	63	74	14	148	48	0	1	49	1.10
62679030--62679227	66	3.0	67	76	11	169	48	0	1	49	1.10
62679282--62679491	9	23.7	9	64	23	54	46	0	0	53	1.00
62679318--62679352	17	2.1	17	88	0	52	42	0	0	57	0.99
62679333--62679377	14	3.2	13	82	17	54	37	0	0	62	0.96
62679339--62679453	15	7.4	15	69	16	65	44	0	0	55	0.99
62679322--62679453	48	2.8	46	73	17	121	44	0	0	55	0.99
62679444--62679515	10	7.3	10	80	10	51	50	0	0	50	1.00
62679480--62679545	28	2.3	28	82	17	82	43	1	0	54	1.09
62679450--62679540	40	2.2	41	79	16	100	46	1	0	52	1.07
62679478--62679556	13	6.1	12	72	17	52	44	1	0	54	1.08
62679481--62679633	62	2.5	64	77	14	153	49	0	0	49	1.10
62679587--62679633	15	3.3	15	77	17	55	59	0	0	40	0.97
62679699--62679831	12	11.8	12	65	26	51	53	0	0	45	1.05
62679697--62679820	33	4.0	31	74	11	112	53	0	0	45	1.06
62679755--62679925	2	95.0	2	65	22	67	50	0	0	49	1.05
62679738--62679925	68	3.0	61	72	20	160	51	0	0	48	1.04
62679702--62679839	33	4.2	33	73	17	110	52	0	0	47	1.05
62679745--62679832	12	7.7	12	75	11	78	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62679702--62679838	39	3.8	37	64	28	53	52	0	0	46	1.05
62680696--62680740	14	3.1	14	76	17	56	44	8	0	46	1.34
62680696--62680740	13	3.0	16	68	18	51	44	8	0	46	1.34
62681024--62681195	94	1.8	94	97	0	326	40	6	19	33	1.78
62683031--62685603	153	16.8	153	86	2	3267	37	18	9	34	1.84
62686808--62687131	48	6.8	48	76	2	321	28	18	29	23	1.98
62686802--62687131	96	3.4	96	88	0	473	28	18	29	24	1.98
62689327--62689386	30	2.0	30	100	0	120	23	13	16	46	1.82
62692578--62692798	40	5.6	41	83	8	280	24	22	26	27	2.00
62693026--62693067	22	1.9	22	85	9	59	33	9	14	42	1.78
62698594--62698680	7	12.4	7	78	17	58	19	2	0	78	0.86
62698602--62698680	10	7.8	10	72	22	67	20	2	0	77	0.89
62698596--62698680	37	2.4	35	88	7	127	20	2	0	77	0.88
62699624--62699853	118	1.9	118	93	0	397	23	16	30	29	1.96
62699957--62699996	21	1.9	21	84	0	53	77	0	0	22	0.77
62699979--62700024	17	2.8	17	83	6	60	84	0	6	8	0.77
62708515--62709744	153	8.1	153	80	5	1158	36	18	11	33	1.86
62708515--62709782	307	4.2	304	81	5	1314	36	17	10	34	1.85
62708515--62709545	460	2.2	459	83	2	1293	36	17	11	33	1.86
62714441--62714705	132	2.0	131	90	5	419	30	12	8	48	1.71
62718058--62718120	23	2.7	24	77	5	74	53	23	1	20	1.54
62725607--62725656	16	3.2	15	86	10	73	6	28	52	14	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62725803--62725837	12	3.0	12	87	4	54	31	0	0	68	0.90
62725838--62725875	18	2.1	18	85	9	51	65	15	0	18	1.27
62726048--62726086	11	3.5	11	82	0	51	58	10	10	20	1.59
62728226--62728254	14	2.1	14	100	0	58	44	0	27	27	1.54
62730185--62730227	19	2.2	19	83	8	50	41	2	11	44	1.53
62739590--62739656	21	3.2	20	70	16	55	19	22	17	40	1.92
62739603--62739668	21	3.2	20	67	16	53	15	25	18	40	1.89
62743194--62743316	28	4.4	28	88	2	167	26	13	27	31	1.94
62743219--62743329	28	4.0	27	88	3	125	29	13	25	31	1.94
62744876--62744927	25	2.1	25	88	0	77	36	7	15	40	1.76
62745435--62745476	19	2.2	19	86	4	57	30	9	9	50	1.67
62745556--62745598	18	2.4	18	96	0	77	46	2	0	51	1.13
62745588--62745632	13	3.5	13	77	22	58	40	0	0	60	0.97
62745584--62745648	26	2.4	27	92	5	105	36	1	1	60	1.16
62750163--62750254	44	2.1	44	88	8	134	20	20	25	33	1.97
62750520--62750609	23	4.0	23	77	7	78	22	17	20	40	1.92
62754636--62754686	25	2.0	25	84	0	66	39	7	11	41	1.71
62755317--62755344	10	2.8	10	100	0	56	10	10	7	71	1.31
62758379--62758531	43	3.6	43	94	2	265	29	32	26	11	1.92
62758529--62758631	38	2.7	38	90	0	152	29	26	23	21	1.99
62764843--62764891	26	1.9	25	87	4	71	38	0	0	61	0.96
62765331--62765394	32	2.0	32	93	0	110	32	12	3	51	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62769052--62769107	26	2.1	27	83	6	71	26	0	5	67	1.11
62775751--62775797	22	2.3	19	77	22	51	0	31	0	68	0.90
62776092--62776158	28	2.3	29	85	7	84	62	1	2	32	1.19
62777213--62777256	22	2.0	21	82	8	52	31	0	2	65	1.05
62777417--62777457	16	2.4	16	88	8	55	46	0	2	51	1.14
62779415--62779627	118	1.8	118	95	0	390	29	31	16	22	1.96
62780142--62780175	17	2.0	17	100	0	68	47	17	11	23	1.81
62787074--62787135	27	2.3	26	76	13	63	48	11	3	37	1.55
62788199--62788235	18	2.1	18	89	0	56	56	8	5	29	1.51
62788652--62788679	5	5.6	5	100	0	56	82	0	0	17	0.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290