genome.fa.s7.2.7.7.80.10.50.1000.288.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  288  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92095779--92095815	18	2.1	18	89	0	56	54	13	10	21	1.69
92108635--92108892	41	6.3	41	89	0	399	22	27	20	29	1.98
92108641--92108892	82	3.1	82	98	0	486	22	28	19	29	1.98
92109104--92109140	19	1.9	19	94	0	65	45	18	0	35	1.50
92116349--92116606	41	6.3	41	90	0	408	22	28	20	29	1.98
92116355--92116606	82	3.1	82	99	0	495	22	28	19	28	1.98
92116818--92116854	19	1.9	19	94	0	65	45	18	0	35	1.50
92118800--92118891	29	3.2	29	93	3	150	31	47	2	18	1.60
92118874--92118909	18	2.0	18	94	0	63	25	58	0	16	1.38
92119196--92119327	64	2.1	64	81	11	155	27	3	7	61	1.40
92119308--92119338	14	2.2	14	94	0	53	32	0	0	67	0.91
92119795--92120038	126	1.9	126	94	0	425	29	16	15	39	1.89
92121943--92122000	27	2.1	27	81	6	64	56	15	1	25	1.49
92121952--92122013	27	2.3	27	91	8	101	50	16	1	32	1.55
92123417--92123450	14	2.4	14	86	13	52	64	0	5	29	1.17
92125882--92125907	3	8.7	3	100	0	52	30	0	0	69	0.89
92129415--92129469	25	2.2	24	81	15	60	43	0	1	54	1.10
92129607--92129701	45	2.1	45	88	1	138	32	27	5	34	1.79
92129682--92129733	16	3.2	16	94	0	86	34	36	0	28	1.58
92135362--92135410	21	2.3	21	89	6	73	63	4	0	32	1.13
92135369--92135415	21	2.5	18	78	21	60	59	4	0	36	1.17
92135373--92135445	25	3.0	26	77	15	68	50	4	1	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92135881--92135919	18	2.1	19	90	4	62	17	2	41	38	1.64
92138045--92138078	18	1.9	17	88	5	50	61	0	14	23	1.33
92145494--92145661	44	3.8	44	82	1	185	23	20	20	35	1.96
92146582--92146623	19	2.2	19	95	0	75	30	33	21	14	1.93
92161624--92161667	17	2.4	18	85	7	63	18	2	13	65	1.36
92176833--92176880	25	1.9	25	82	0	60	54	10	0	35	1.35
92182401--92182469	27	2.4	27	77	15	68	17	5	37	39	1.74
92182528--92182643	48	2.4	48	100	0	232	43	0	18	37	1.51
92185302--92185332	15	2.1	15	100	0	62	29	32	6	32	1.83
92188348--92188521	40	4.4	39	87	5	208	24	27	21	25	1.99
92188381--92188528	40	3.7	40	89	5	237	25	27	22	25	2.00
92188381--92188528	79	1.9	80	90	4	237	25	27	22	25	2.00
92192743--92192811	35	2.0	35	82	0	84	30	31	1	36	1.67
92192827--92192887	25	2.4	25	83	0	86	14	39	19	26	1.90
92201595--92201659	34	1.9	34	84	6	87	33	15	9	41	1.79
92201996--92202034	18	2.1	18	85	9	51	28	12	0	58	1.34
92205678--92205764	16	5.1	17	71	24	60	58	3	2	35	1.27
92207495--92207555	25	2.4	25	76	15	63	47	0	3	49	1.18
92208497--92208532	16	2.2	16	95	0	63	36	5	30	27	1.80
92208701--92208794	26	3.4	26	66	16	71	51	3	0	45	1.17
92208778--92208811	17	2.0	17	94	0	59	58	2	0	38	1.13
92208704--92208832	58	2.3	57	80	9	140	50	4	0	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92212440--92212464	12	2.1	12	100	0	50	56	24	8	12	1.62
92213244--92213365	57	2.1	59	84	3	158	31	18	4	45	1.68
92216144--92216211	34	2.0	34	97	0	127	20	27	17	33	1.95
92220600--92220625	9	2.9	9	100	0	52	57	0	0	42	0.98
92224160--92224263	48	2.2	46	91	3	163	34	9	19	36	1.84
92229538--92229571	17	2.0	17	100	0	68	47	23	17	11	1.81
92231007--92231039	16	2.1	16	100	0	66	33	12	24	30	1.91
92231812--92231875	8	8.4	8	82	5	62	20	1	32	45	1.61
92231181--92231902	355	2.0	360	91	3	1177	34	12	25	27	1.92
92233167--92233312	75	1.9	75	81	0	175	34	20	13	31	1.92
92233158--92233314	25	6.3	25	67	11	72	35	21	13	29	1.92
92234935--92235167	12	19.7	12	67	13	72	27	10	3	58	1.45
92234935--92234999	24	2.7	24	85	0	85	27	15	3	53	1.56
92235128--92235166	20	2.0	20	94	0	69	30	7	2	58	1.39
92235331--92235542	3	70.7	3	73	8	146	30	7	0	61	1.28
92235804--92235836	16	2.0	17	88	5	50	54	9	0	36	1.32
92237881--92237940	30	2.0	30	100	0	120	50	3	0	46	1.18
92238278--92238329	23	2.2	23	83	10	61	53	5	3	36	1.43
92243130--92243169	20	2.0	20	100	0	80	35	15	25	25	1.94
92261435--92261521	45	1.9	45	88	4	131	35	12	6	44	1.69
92266045--92266083	14	2.6	16	88	8	55	46	15	2	35	1.60
92268583--92268643	17	3.4	17	72	27	63	40	9	1	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92268567--92268649	37	2.3	37	95	2	150	38	9	4	46	1.58
92268567--92268626	20	3.2	20	68	31	60	38	11	3	46	1.57
92269734--92269776	21	2.0	23	86	9	63	34	0	6	58	1.25
92269881--92269924	23	1.9	24	90	9	74	31	2	6	59	1.36
92270569--92270610	22	1.9	22	85	9	59	40	2	0	57	1.12
92270819--92270866	23	2.1	23	100	0	96	33	25	27	14	1.94
92271081--92271127	22	2.1	22	84	7	60	17	4	6	72	1.22
92273498--92273563	20	3.4	20	80	12	75	40	1	1	56	1.18
92273825--92273850	3	8.7	3	100	0	52	34	0	0	65	0.93
92273857--92273903	13	3.5	14	82	5	62	76	0	8	14	1.01
92273861--92273915	18	3.1	18	81	2	58	74	1	10	12	1.15
92274969--92275075	45	2.4	45	86	9	148	21	17	19	41	1.91
92276135--92276198	27	2.4	27	87	7	87	54	7	1	35	1.39
92277105--92277131	1	27.0	1	100	0	54	0	0	0	100	0.00
92286411--92286454	23	1.9	23	81	9	54	40	22	6	29	1.80
92288810--92288850	6	6.8	6	94	0	55	39	51	9	0	1.35
92288810--92288850	12	3.4	12	89	0	64	39	51	9	0	1.35
92293773--92293823	15	3.2	16	79	17	61	43	0	0	56	0.99
92293780--92293823	16	2.8	16	86	10	56	43	0	0	56	0.99
92303031--92303056	7	3.7	7	100	0	52	38	0	0	61	0.96
92310624--92310674	22	2.3	23	80	16	63	47	0	29	23	1.52
92313175--92313202	5	5.6	5	100	0	56	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92316325--92316357	15	2.1	16	88	5	50	30	0	0	69	0.88
92321140--92321248	53	2.1	53	96	0	200	23	13	20	42	1.88
92321251--92321288	10	3.8	10	86	6	51	2	10	0	86	0.66
92321240--92321287	14	3.3	14	80	11	51	2	14	0	83	0.74
92321254--92321287	16	2.2	16	90	10	54	2	8	0	88	0.62
92328071--92328104	17	2.0	17	88	0	50	32	14	8	44	1.76
92339741--92339773	15	2.2	15	94	0	57	45	3	33	18	1.65
92342065--92342093	15	2.0	15	93	6	51	27	3	0	68	1.05
92342927--92343027	49	2.1	49	82	0	121	30	21	6	40	1.80
92344327--92344412	43	2.0	43	86	0	118	22	20	3	53	1.61
92348907--92348966	30	2.0	30	93	0	102	58	11	5	25	1.53
92351844--92351909	21	3.3	21	72	20	68	12	24	22	40	1.88
92351826--92351926	39	2.6	39	90	0	157	13	25	22	37	1.92
92358242--92358278	18	2.0	19	89	5	58	62	16	5	16	1.51
92370837--92370876	21	1.9	21	89	0	62	55	2	12	30	1.50
92376907--92376970	31	2.0	32	85	8	87	45	0	7	46	1.32
92377398--92377454	15	3.9	15	83	2	80	35	1	12	50	1.50
92377812--92377858	23	2.0	23	87	0	67	14	21	21	42	1.88
92377824--92377899	23	3.4	23	75	17	79	13	21	25	40	1.89
92378139--92378201	28	2.2	28	100	0	126	33	9	22	34	1.86
92391369--92391406	3	12.7	3	100	0	76	31	0	0	68	0.90
92392928--92393029	50	2.0	50	100	0	204	26	23	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92406374--92406419	24	1.9	24	81	0	56	32	4	15	47	1.65
92409487--92409519	17	1.9	17	93	0	57	15	33	3	48	1.60
92411245--92411281	19	1.9	19	88	0	56	21	27	8	43	1.80
92416289--92416321	8	4.1	8	100	0	66	39	0	0	60	0.97
92422412--92422479	27	2.4	27	78	9	66	41	1	2	54	1.24
92424754--92424785	15	2.1	15	94	0	55	62	3	6	28	1.34
92428234--92428287	17	3.3	15	76	23	56	59	1	0	38	1.08
92434343--92434476	65	2.1	65	98	0	259	43	8	22	25	1.82
92436440--92436505	22	3.3	22	64	27	65	50	1	9	39	1.44
92436440--92436513	37	2.0	37	100	0	148	45	2	10	40	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290