genome.fa.s7.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  101  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31164488--31164574	35	2.5	35	83	5	106	11	17	33	37	1.85
31174052--31174091	11	3.9	11	75	18	50	60	2	0	37	1.11
31181440--31181488	24	2.1	24	85	7	66	44	6	4	44	1.47
31185663--31185704	18	2.3	19	87	4	59	73	0	21	4	1.01
31191045--31191088	20	2.1	21	91	4	72	56	0	11	31	1.35
31193087--31193120	17	1.9	18	94	5	61	44	17	5	32	1.73
31202442--31202526	30	2.8	30	89	3	118	42	25	20	11	1.86
31222221--31222338	44	2.7	43	85	3	166	25	16	26	31	1.97
31226809--31226911	27	3.8	26	87	6	134	31	24	6	37	1.81
31226809--31226913	54	1.9	54	88	0	156	31	23	6	38	1.81
31226904--31226976	28	2.6	28	93	2	121	41	20	8	30	1.81
31226890--31227023	55	2.4	55	78	6	137	38	21	8	31	1.83
31226836--31227049	27	7.9	27	82	4	171	35	21	7	35	1.82
31227007--31227085	27	2.9	27	84	0	95	31	17	7	43	1.77
31226863--31227111	137	1.8	135	80	3	302	34	21	8	35	1.84
31227123--31227266	27	5.3	27	79	6	157	42	20	6	30	1.78
31227082--31227222	54	2.6	53	75	10	126	39	22	9	27	1.86
31227294--31227367	27	2.7	27	76	12	71	37	20	20	21	1.94
31228077--31228163	20	4.3	20	91	2	131	40	9	18	32	1.82
31228076--31228148	11	7.2	11	66	16	50	39	8	17	34	1.80
31228213--31228348	26	5.3	26	91	3	208	27	21	23	27	1.99
31228481--31228574	42	2.2	42	90	0	143	29	13	20	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31228596--31228705	31	3.5	31	93	0	184	31	18	23	26	1.97
31230965--31231231	54	4.9	53	77	6	239	33	22	7	35	1.83
31230966--31231241	109	2.6	108	81	2	313	34	22	7	35	1.83
31230985--31231231	27	9.1	27	77	6	158	33	21	7	37	1.82
31231263--31231386	27	4.6	27	77	7	119	42	21	7	28	1.79
31231283--31231396	54	2.1	54	83	3	140	40	17	8	33	1.81
31231194--31231395	81	2.5	81	72	13	182	37	20	10	32	1.86
31231263--31231414	81	1.9	81	80	10	177	40	21	7	30	1.82
31232218--31232304	20	4.3	20	91	2	122	37	10	20	31	1.86
31232354--31232489	26	5.3	26	87	3	190	27	21	22	27	1.99
31232622--31232715	42	2.2	42	88	0	134	29	12	20	37	1.90
31232737--31232846	31	3.5	31	96	0	202	29	17	26	27	1.97
31234404--31234494	23	4.0	24	74	17	77	23	18	21	36	1.95
31234444--31234494	22	2.3	22	86	10	68	19	19	23	37	1.94
31236482--31236515	18	1.9	17	88	5	50	26	5	23	44	1.76
31242870--31242924	27	2.0	27	85	0	74	30	12	34	21	1.91
31257886--31274117	988	16.4	989	99	0	32177	26	15	15	41	1.87
31280238--31280357	55	2.2	55	83	0	150	24	31	29	15	1.95
31286718--31286775	24	2.4	24	85	5	82	44	0	0	55	0.99
31286722--31286774	3	18.7	3	74	18	51	41	0	0	58	0.98
31286722--31286774	8	6.2	8	81	18	63	41	0	0	58	0.98
31286731--31286774	5	9.0	5	83	14	56	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31286718--31286772	13	4.4	13	77	9	60	43	0	0	56	0.99
31288505--31288542	19	2.0	20	84	5	51	36	2	13	47	1.56
31292844--31292892	24	2.0	24	96	0	89	22	26	18	32	1.97
31296110--31296334	40	5.7	39	86	3	272	25	28	22	23	1.99
31296110--31296334	79	2.8	78	83	4	272	25	28	22	23	1.99
31304165--31304389	40	5.7	39	86	3	272	25	27	23	23	2.00
31313928--31313963	16	2.2	16	95	0	63	50	5	13	30	1.65
31321053--31321149	21	4.8	19	82	5	59	37	18	30	13	1.89
31321073--31321151	21	3.9	21	85	3	99	39	20	29	11	1.87
31321850--31321907	26	2.2	26	93	0	98	34	5	24	36	1.78
31328295--31328422	39	3.3	39	91	4	188	20	21	29	28	1.98
31330278--31330320	20	2.2	20	87	8	61	51	2	6	39	1.42
31330954--31332588	815	2.0	815	99	0	3236	35	19	12	32	1.89
31340608--31340668	25	2.3	27	86	8	90	42	11	3	42	1.57
31345962--31346013	12	4.4	12	72	13	54	67	1	3	26	1.18
31357077--31357209	60	2.2	61	89	1	196	48	5	2	43	1.37
31358044--31358103	31	1.9	31	93	0	102	31	25	8	35	1.85
31370552--31370585	13	2.8	12	86	8	50	32	2	0	64	1.08
31370553--31370579	13	2.1	13	100	0	54	29	0	0	70	0.88
31372844--31372978	69	2.0	69	92	0	225	40	14	11	34	1.82
31373997--31374021	6	4.2	6	100	0	50	84	0	0	16	0.63
31375587--31375717	47	2.8	47	88	0	181	33	29	14	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31382954--31383084	69	1.9	68	88	1	199	35	21	4	38	1.74
31383178--31383228	6	8.5	6	97	0	93	52	0	1	45	1.12
31383583--31383633	19	2.8	18	81	16	61	25	1	3	68	1.17
31385914--31385988	15	5.2	15	84	9	111	24	14	28	33	1.94
31385915--31385984	29	2.4	29	92	2	115	22	15	27	34	1.95
31386045--31386171	22	5.7	22	69	14	80	34	13	18	33	1.89
31386366--31386426	27	2.3	27	91	5	97	21	24	31	22	1.98
31386439--31386473	18	1.9	18	88	0	52	20	17	31	31	1.95
31388334--31388364	16	1.9	16	93	0	53	29	0	16	54	1.42
31388912--31389109	103	1.9	103	90	0	315	34	16	24	24	1.95
31388928--31389162	103	2.3	102	81	5	264	34	17	24	23	1.96
31390260--31390324	29	2.2	29	83	0	76	38	18	7	35	1.80
31392029--31392070	9	4.6	9	82	5	57	33	2	21	42	1.66
31395352--31395437	41	2.1	41	97	0	163	34	27	16	20	1.94
31405957--31405990	15	2.1	17	89	10	54	17	5	2	73	1.16
31412701--31412775	37	2.0	37	94	0	132	52	6	2	38	1.42
31412942--31412991	23	2.2	23	100	0	100	38	8	22	32	1.83
31413578--31413611	7	4.9	7	100	0	68	58	0	14	26	1.36
31414338--31414379	15	2.9	15	80	16	52	45	2	21	30	1.65
31427011--31427079	16	4.2	16	92	3	120	24	1	37	36	1.65
31427011--31427079	33	2.1	32	94	2	120	24	1	37	36	1.65
31427060--31427150	45	2.0	45	85	2	121	27	6	28	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31427315--31427349	18	2.0	17	88	5	52	54	0	0	45	0.99
31427435--31427469	18	2.0	17	88	5	52	54	0	0	45	0.99
31427298--31427519	120	1.9	120	99	0	435	48	5	1	44	1.37
31430836--31430863	11	2.5	11	100	0	56	42	10	39	7	1.67
31431376--31431421	23	2.0	23	84	12	60	45	10	6	36	1.65
31431383--31431427	23	2.0	23	82	8	56	40	13	8	37	1.76
31444001--31444058	29	2.2	25	78	21	73	18	20	27	32	1.97
31446724--31446762	20	2.0	20	85	10	53	33	0	35	30	1.58
31451514--31451551	15	2.5	15	100	0	76	21	23	36	18	1.95
31451888--31451922	11	3.3	11	88	4	54	68	22	0	8	1.16
31454028--31454105	39	2.0	39	94	0	138	16	32	14	37	1.89
31458079--31458178	24	4.0	24	85	12	130	39	16	21	24	1.92
31458068--31458190	52	2.4	52	87	5	169	37	14	23	24	1.92
31458068--31458190	24	4.7	27	77	17	125	37	14	23	24	1.92
31466525--31466562	14	2.9	13	81	11	51	18	13	10	57	1.63
31477058--31477209	24	6.0	24	82	11	187	38	17	21	22	1.93
31477047--31477221	52	3.4	52	94	1	289	36	16	24	23	1.94
31477245--31477494	51	4.9	51	94	1	394	32	13	25	28	1.94
31481056--31481137	42	2.0	42	85	0	110	35	23	13	28	1.92
31489268--31489312	23	2.0	23	81	0	54	40	6	11	42	1.67
31489312--31489341	14	2.1	14	93	0	51	16	0	36	46	1.47
31499190--31499229	21	1.9	21	89	0	62	27	5	7	60	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31505275--31505343	29	2.4	29	85	2	104	21	14	17	46	1.84
31505701--31505742	21	2.0	21	95	0	75	42	11	35	9	1.74
31509467--31509513	24	2.0	24	84	16	62	51	17	0	31	1.46
31519722--31519798	33	2.3	33	97	0	145	27	11	27	33	1.91
31527254--31527307	24	2.2	24	80	6	65	53	1	0	44	1.11
31535195--31535245	9	5.7	9	85	0	66	27	7	21	43	1.80
31540132--31540198	34	2.0	33	91	8	109	19	25	23	31	1.98
31546495--31546548	24	2.2	24	78	12	58	61	0	12	25	1.32
31548066--31548112	21	2.2	21	81	11	60	51	4	10	34	1.56
31552875--31553113	41	5.8	41	88	6	299	27	20	24	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290