genome.fa.s7.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  126  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39555458--39555644	65	2.9	65	84	2	243	37	2	6	52	1.41
39555606--39555644	19	2.0	20	85	9	55	43	2	5	48	1.38
39556799--39556831	17	1.9	17	100	0	66	18	15	42	24	1.88
39557572--39557875	159	1.9	159	85	4	425	28	15	8	47	1.75
39558987--39559031	17	2.6	17	89	0	72	51	4	13	31	1.61
39560572--39561028	188	2.4	187	80	2	495	29	18	16	35	1.93
39560572--39561197	94	6.7	94	74	4	402	29	18	16	34	1.94
39561159--39561390	94	2.5	93	82	4	286	29	21	18	31	1.97
39564879--39564951	38	1.9	38	83	5	94	28	28	21	20	1.98
39564916--39565012	41	2.5	38	75	6	97	28	29	19	21	1.98
39566036--39566069	17	2.1	17	88	5	52	2	26	0	70	1.01
39569921--39569997	24	3.2	24	83	3	75	12	40	7	38	1.73
39572440--39572473	17	1.9	18	88	5	52	41	0	8	50	1.34
39572844--39572893	21	2.4	21	82	0	55	18	26	18	38	1.93
39573829--39573945	61	1.9	61	82	0	144	23	31	24	20	1.98
39576235--39576275	22	2.0	22	90	9	68	43	9	9	36	1.71
39576539--39576573	17	2.1	17	89	5	54	65	0	0	34	0.93
39576961--39577009	8	6.1	8	78	7	55	55	0	2	42	1.11
39579504--39579538	16	2.1	18	89	10	56	45	2	17	34	1.63
39581104--39581149	20	2.4	19	82	13	58	23	45	21	8	1.80
39581116--39581156	20	2.0	20	100	0	82	19	39	29	12	1.88
39582954--39582988	17	2.0	18	88	5	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39582961--39583011	27	1.9	27	88	4	77	52	3	0	43	1.19
39582954--39582993	18	2.2	18	86	4	53	50	0	0	50	1.00
39585103--39585142	21	2.0	20	85	5	53	45	2	5	47	1.38
39587592--39587662	36	2.0	36	97	0	133	38	23	8	29	1.85
39595966--39596007	21	2.0	22	85	4	59	64	4	0	30	1.14
39599920--39599973	26	2.1	26	86	6	74	40	5	1	51	1.36
39605184--39605251	3	22.7	3	87	0	91	67	0	32	0	0.91
39606736--39606781	16	2.9	16	90	0	56	39	4	28	28	1.76
39606763--39606856	44	2.1	44	82	7	109	34	5	26	34	1.79
39606927--39606977	25	2.0	25	82	17	61	39	0	7	52	1.30
39606953--39607068	55	2.1	57	83	4	146	50	3	0	45	1.24
39607045--39607090	24	1.9	24	86	8	67	47	2	0	50	1.13
39606953--39607093	55	2.5	57	79	13	143	50	2	0	46	1.21
39609534--39609614	40	2.0	40	100	0	162	37	14	14	33	1.88
39610777--39610823	21	2.2	22	92	3	78	21	38	19	21	1.94
39614875--39614942	34	2.0	34	91	2	111	42	17	16	23	1.88
39615118--39615145	13	2.2	13	100	0	56	64	0	0	35	0.94
39620494--39620538	22	2.0	22	86	4	63	31	0	11	57	1.33
39620502--39620559	22	2.7	20	86	10	71	20	0	10	68	1.18
39620507--39620567	12	5.5	11	75	9	52	21	0	8	70	1.13
39624517--39624559	22	2.0	22	90	0	68	41	0	4	53	1.21
39625069--39625174	41	2.6	41	76	15	112	33	15	20	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39625613--39625738	21	5.9	21	79	10	123	53	25	0	19	1.50
39625590--39625723	14	9.5	13	77	15	92	52	26	0	19	1.51
39625613--39625723	7	15.7	7	80	12	111	54	25	0	18	1.49
39625628--39625745	14	8.2	15	71	16	58	55	24	0	18	1.48
39626144--39626223	42	1.9	42	82	10	101	30	17	23	28	1.97
39626215--39626736	116	4.5	116	84	3	629	29	14	19	35	1.92
39630215--39630338	43	2.9	43	78	1	133	31	22	15	30	1.95
39639302--39639337	17	2.1	18	89	5	56	47	5	5	41	1.50
39639370--39639394	6	4.2	6	100	0	50	48	0	16	36	1.46
39652208--39652233	13	2.0	13	100	0	52	46	23	0	30	1.53
39667797--39667867	36	2.0	35	89	5	108	49	16	4	29	1.65
39667855--39667907	22	2.4	22	87	6	72	45	13	9	32	1.75
39671433--39671910	239	2.0	238	89	2	735	29	22	12	34	1.91
39676794--39676905	55	2.1	54	93	1	188	53	1	23	21	1.55
39677920--39677982	22	2.9	22	75	0	63	15	30	19	34	1.93
39685012--39685076	22	3.0	22	88	0	94	16	26	18	38	1.92
39695693--39695756	32	2.0	32	84	0	83	17	35	28	18	1.93
39695711--39695776	32	2.1	32	85	0	87	19	33	25	21	1.97
39698334--39698392	24	2.4	24	76	20	61	54	5	1	38	1.33
39699849--39699937	31	2.9	30	72	8	72	41	7	5	44	1.57
39700158--39700190	3	11.0	3	100	0	66	33	0	0	66	0.92
39704325--39704372	22	2.2	22	82	14	55	27	6	0	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39704395--39704472	34	2.4	32	82	16	90	33	1	7	57	1.35
39704417--39704472	12	4.8	12	73	8	53	35	1	7	55	1.38
39704547--39704602	24	2.3	25	82	14	64	30	3	8	57	1.47
39704615--39704665	11	4.5	11	75	20	52	33	9	1	54	1.44
39704764--39704800	9	4.1	9	85	0	56	37	0	2	59	1.12
39704766--39704803	18	2.1	18	95	0	67	36	0	2	60	1.11
39704853--39704898	24	1.9	24	86	0	65	41	8	4	45	1.55
39705027--39705096	37	1.9	35	81	18	81	30	12	0	57	1.36
39705203--39705258	25	2.3	24	79	14	62	37	16	3	42	1.65
39712208--39712240	17	2.0	17	88	5	50	33	15	3	48	1.60
39712526--39712791	46	6.0	46	86	7	343	21	24	15	38	1.92
39712705--39712780	38	2.0	38	97	0	143	23	26	17	32	1.96
39720930--39722211	72	16.8	73	71	14	790	30	16	19	32	1.95
39721260--39722211	74	12.6	74	77	9	860	31	16	19	32	1.94
39721247--39722211	238	4.3	220	87	7	1287	31	16	19	32	1.94
39721396--39721572	90	2.0	88	85	4	239	29	17	16	35	1.93
39721484--39722206	149	4.9	147	86	4	938	31	16	19	32	1.94
39721498--39722211	72	9.6	73	86	3	914	31	16	20	31	1.95
39723067--39723120	19	2.8	19	94	0	90	57	35	1	5	1.33
39724168--39724206	17	2.5	15	87	8	51	35	12	0	51	1.40
39724332--39724407	35	2.1	37	83	9	95	34	0	6	59	1.24
39724489--39724544	24	2.3	25	82	14	64	30	3	8	57	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39724601--39724637	19	1.9	19	94	0	65	32	13	2	51	1.55
39725132--39725187	25	2.3	24	79	14	62	37	16	3	42	1.65
39728004--39728190	28	6.7	28	86	1	259	29	28	13	27	1.95
39728176--39728266	40	2.3	40	92	0	155	36	23	15	25	1.94
39729414--39729463	10	5.0	10	81	13	59	68	0	8	24	1.16
39732576--39732637	21	3.0	21	87	0	88	30	17	45	6	1.74
39733081--39733122	6	6.8	6	84	7	50	78	0	4	16	0.91
39733081--39733122	13	3.4	12	81	15	50	78	0	4	16	0.91
39745460--39745502	21	2.0	21	95	0	77	30	20	9	39	1.84
39749414--39749456	21	2.0	21	95	0	77	30	20	9	39	1.84
39752834--39752877	20	2.2	20	84	4	54	77	4	15	2	1.04
39756031--39756099	27	2.5	28	80	2	86	27	7	11	53	1.63
39756033--39756099	28	2.4	27	80	2	80	28	7	10	53	1.62
39757543--39757619	23	3.3	23	87	0	100	19	15	20	44	1.87
39764657--39764714	30	1.9	31	92	3	100	55	13	3	27	1.55
39775194--39775233	20	2.0	21	90	5	64	25	7	40	27	1.82
39781729--39781771	21	2.1	20	82	4	50	55	4	0	39	1.20
39781725--39781797	29	2.4	32	71	19	75	53	4	0	42	1.20
39783511--39783558	25	2.0	25	84	12	64	60	4	0	35	1.16
39785782--39786079	45	6.6	45	79	6	241	22	17	14	45	1.85
39785789--39786079	90	3.2	90	80	3	311	22	16	14	46	1.84
39785828--39786071	135	1.8	134	82	6	314	22	16	14	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39788849--39789050	73	2.8	73	87	0	269	30	19	16	33	1.95
39792985--39793032	8	5.8	8	85	9	69	14	4	0	81	0.84
39792986--39793032	17	2.8	16	90	6	67	14	4	0	80	0.85
39792985--39793030	20	2.3	20	82	10	58	13	4	0	82	0.81
39794284--39794308	12	2.1	12	100	0	50	60	8	8	24	1.52
39801898--39801928	15	2.1	15	100	0	62	35	19	0	45	1.51
39804109--39804135	11	2.5	11	100	0	54	22	7	18	51	1.70
39805575--39805617	15	2.7	16	85	7	52	46	2	0	51	1.13
39805534--39805726	91	2.1	92	88	6	286	45	3	4	47	1.39
39805704--39805802	52	2.0	52	80	11	118	45	6	2	46	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290