genome.fa.s7.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  119  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37102208--37102259	21	2.5	21	84	6	61	23	40	23	13	1.89
37105439--37105521	38	2.2	38	97	0	157	31	9	12	46	1.73
37107186--37107253	25	2.7	25	90	2	100	29	25	22	23	1.99
37112303--37112338	14	2.5	14	86	4	54	77	2	0	19	0.88
37118093--37118128	14	2.5	15	86	9	56	58	11	5	25	1.54
37121498--37121616	56	2.1	56	98	1	229	44	19	2	33	1.64
37122087--37122149	27	2.3	27	89	5	92	41	34	4	19	1.72
37123198--37123251	15	3.6	14	79	16	56	46	5	0	48	1.25
37123356--37123389	17	1.9	18	88	5	52	29	20	0	50	1.49
37129317--37129363	23	2.0	23	88	8	69	40	38	10	10	1.75
37129378--37129440	27	2.3	27	86	5	83	41	33	6	19	1.76
37129364--37129440	27	3.0	25	80	16	77	40	32	5	22	1.76
37129995--37130040	15	3.2	14	82	17	51	17	6	2	73	1.14
37129990--37130047	19	3.1	18	76	18	55	15	6	3	74	1.17
37130501--37130554	15	3.6	14	79	16	56	46	5	0	48	1.25
37141490--37141517	13	2.2	13	100	0	56	57	7	14	21	1.61
37144525--37144599	22	3.5	21	75	12	71	18	10	1	69	1.25
37150417--37150484	7	9.4	7	77	16	59	1	20	1	76	0.94
37153060--37153177	27	4.4	27	83	0	137	38	16	19	26	1.92
37153060--37153177	54	2.2	54	87	3	166	38	16	19	26	1.92
37153317--37153368	26	2.0	27	92	3	88	21	23	23	32	1.98
37153558--37153653	33	2.9	33	84	0	120	25	19	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37154648--37154781	63	2.1	63	91	0	214	26	23	25	24	2.00
37154648--37154813	63	2.6	63	83	1	190	25	22	25	26	2.00
37156834--37156865	12	2.6	12	95	5	55	31	6	12	50	1.65
37159187--37159238	23	2.3	23	86	0	68	21	21	19	38	1.94
37159200--37159294	23	4.2	23	77	6	79	26	21	18	33	1.96
37159206--37159296	46	2.0	46	86	2	130	26	23	19	30	1.98
37159277--37159333	24	2.3	25	87	3	89	29	22	12	35	1.91
37167438--37167655	40	5.5	40	91	4	327	23	22	27	25	2.00
37172483--37172656	48	3.6	48	86	1	240	27	17	28	27	1.97
37172577--37172693	48	2.4	48	83	5	121	28	18	27	25	1.98
37178132--37178213	39	2.1	39	95	0	146	60	7	2	29	1.36
37195348--37195399	26	2.0	26	96	0	95	13	23	34	28	1.92
37195270--37195492	103	2.2	104	93	2	378	18	18	31	31	1.95
37195522--37195573	26	2.0	26	92	0	86	15	21	34	28	1.94
37195411--37195561	72	2.1	72	91	2	243	23	16	29	30	1.96
37198233--37198456	67	3.3	67	94	1	387	30	16	32	21	1.95
37202209--37202514	47	6.6	46	73	14	193	23	28	20	27	1.99
37202209--37202514	140	2.2	137	83	9	370	23	28	20	27	1.99
37209754--37210019	47	5.7	46	73	13	201	23	29	20	25	1.99
37209852--37210019	46	3.6	46	79	10	198	23	28	21	26	1.99
37211732--37211837	41	2.6	40	86	4	149	13	37	24	24	1.91
37212881--37213024	47	3.1	45	75	11	139	23	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37230374--37230502	47	2.7	47	77	16	142	21	30	20	27	1.98
37233722--37233943	46	4.7	47	78	9	213	27	18	30	23	1.98
37237286--37237439	57	2.7	57	94	2	265	27	18	11	43	1.83
37240286--37240486	27	7.4	27	84	3	242	27	14	26	30	1.95
37248516--37248666	27	5.6	27	82	4	169	27	13	28	30	1.94
37248516--37248666	82	1.9	81	87	4	223	27	13	28	30	1.94
37248517--37248666	55	2.8	54	85	3	185	26	14	28	30	1.95
37252789--37252824	18	2.0	18	88	0	54	66	0	0	33	0.92
37256478--37256619	42	3.4	42	76	4	128	26	16	23	32	1.96
37266571--37266754	40	4.6	40	82	6	196	23	20	27	28	1.99
37266571--37266751	80	2.3	81	83	9	221	23	20	27	27	1.99
37266652--37266801	40	3.8	38	80	10	131	25	22	28	24	1.99
37266692--37266814	40	3.1	39	80	6	97	26	21	28	23	1.99
37274470--37274653	40	4.6	40	82	6	196	23	20	27	28	1.99
37274470--37274650	80	2.3	81	83	9	221	23	20	27	27	1.99
37274551--37274700	40	3.8	38	80	10	131	25	22	28	24	1.99
37289482--37289551	35	2.0	35	100	0	140	31	20	11	37	1.88
37296872--37296999	64	2.0	64	98	0	247	37	16	7	38	1.78
37301542--37301669	43	3.0	44	75	15	124	24	14	26	34	1.94
37304837--37304993	67	2.3	67	86	6	217	33	16	29	20	1.95
37318737--37318954	40	5.5	40	91	2	325	24	27	23	24	2.00
37328176--37328288	28	4.0	28	85	1	136	27	15	14	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37332163--37332222	27	2.2	28	81	6	77	30	18	20	31	1.96
37332171--37332241	27	2.7	26	84	4	88	23	21	15	39	1.91
37332198--37332252	27	2.1	27	82	3	67	29	20	12	38	1.89
37339014--37339055	18	2.1	21	87	12	63	19	4	23	52	1.65
37342086--37342231	49	2.9	48	83	9	184	29	27	15	27	1.96
37342095--37342229	52	2.7	51	87	5	186	29	27	15	27	1.96
37348513--37348606	27	3.5	27	89	2	118	29	17	15	37	1.91
37350376--37350550	40	4.4	40	89	2	257	23	21	28	26	1.99
37358428--37358601	40	4.4	40	89	2	255	22	21	29	25	1.99
37359958--37360158	27	7.5	27	79	5	192	33	10	17	38	1.84
37359953--37360158	54	3.8	54	80	5	238	33	10	18	37	1.85
37359953--37360157	81	2.5	80	85	2	268	33	9	19	38	1.84
37361577--37361749	93	1.9	93	92	2	294	27	28	21	22	1.99
37361570--37361745	46	3.8	46	76	8	187	28	27	21	22	1.99
37362624--37362648	11	2.3	11	100	0	50	44	0	12	44	1.41
37367857--37367913	30	1.9	29	89	3	87	56	17	15	10	1.67
37378557--37378602	20	2.3	20	82	14	60	28	28	17	26	1.98
37379918--37379956	19	2.1	19	85	9	53	71	0	25	2	0.98
37383285--37383515	40	5.9	40	84	8	269	25	21	27	25	1.99
37383292--37383536	116	2.1	115	80	7	264	26	20	26	26	1.99
37389402--37389521	56	2.1	56	98	0	231	45	9	23	22	1.81
37390646--37390867	40	5.7	40	85	6	269	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37390646--37390867	79	2.8	78	85	6	270	24	22	27	25	2.00
37393264--37393309	20	2.3	20	82	14	60	28	28	17	26	1.98
37393276--37393319	19	2.2	20	84	4	54	34	25	18	22	1.96
37402002--37402044	21	2.0	21	100	0	86	46	13	0	39	1.44
37407733--37407783	25	2.0	25	88	0	75	31	21	19	27	1.97
37407823--37407861	10	3.8	10	93	6	69	33	17	17	30	1.94
37407822--37407861	21	1.9	21	100	0	80	35	17	17	30	1.93
37407906--37407988	24	3.4	24	90	5	123	27	22	22	26	1.99
37407906--37408000	49	1.9	49	85	8	131	26	24	23	26	2.00
37415619--37415669	25	2.0	25	92	0	84	31	23	19	25	1.98
37415709--37415747	10	3.8	10	90	6	60	33	17	15	33	1.92
37415708--37415747	21	1.9	21	94	0	71	35	17	15	32	1.91
37415792--37415923	25	5.4	24	91	3	176	26	21	22	28	1.99
37421452--37421506	26	2.1	26	100	0	110	38	23	10	27	1.88
37426392--37426461	25	2.8	25	93	0	122	24	22	20	32	1.97
37428562--37428661	42	2.4	42	86	3	130	22	29	23	26	1.99
37430189--37430350	43	3.8	42	76	8	139	31	25	19	22	1.98
37430720--37430744	8	3.1	8	100	0	50	24	24	0	52	1.48
37432108--37432146	20	2.0	20	85	10	53	51	25	5	17	1.66
37434004--37434067	28	2.3	29	81	10	71	50	23	0	26	1.50
37439457--37439484	13	2.2	13	100	0	56	39	14	21	25	1.91
37439824--37439964	48	3.0	48	85	1	185	31	15	21	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37439926--37440000	38	2.0	38	91	0	123	32	16	24	28	1.96
37442861--37442914	26	2.1	26	89	6	83	18	18	20	42	1.89
37442930--37442982	15	3.5	15	82	5	63	13	15	11	60	1.59
37442926--37442982	30	1.9	30	85	7	80	12	14	15	57	1.65
37444860--37445000	48	3.0	48	85	1	176	31	16	21	30	1.95
37446600--37446658	25	2.4	25	77	5	66	27	20	25	27	1.99
37447993--37448090	42	2.3	42	81	8	108	24	17	26	31	1.97
37452600--37452646	24	2.0	24	95	0	85	23	17	17	42	1.88
37457225--37457333	37	2.9	37	95	0	191	26	31	19	22	1.98
37457479--37457617	52	2.8	49	84	8	192	31	25	6	35	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290