genome.fa.s7.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  175  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56948799--56948967	42	4.0	42	75	8	164	31	24	15	28	1.96
56951079--56951227	43	3.5	43	75	10	119	26	24	20	27	1.99
56951109--56951228	42	2.8	40	77	13	116	26	25	21	25	2.00
56954239--56954350	6	18.3	6	69	20	72	48	14	17	19	1.81
56954253--56954347	25	3.9	24	79	9	95	47	14	18	18	1.83
56954281--56954350	30	2.3	31	97	2	133	50	14	15	20	1.78
56954751--56955027	27	10.3	27	90	0	383	23	20	20	35	1.96
56955040--56955137	27	3.7	26	78	5	97	27	7	19	45	1.76
56955013--56955136	54	2.3	53	79	5	133	29	8	20	42	1.80
56954751--56955081	81	4.1	81	84	3	265	24	19	20	35	1.95
56955145--56955328	27	6.8	27	87	0	269	40	7	22	29	1.82
56955102--56955328	81	2.8	81	83	4	244	38	7	21	32	1.82
56955338--56955488	27	5.6	27	77	12	130	29	8	21	40	1.83
56955346--56955487	54	2.7	52	81	4	151	29	8	21	40	1.83
56955339--56955487	81	1.8	81	80	5	176	29	8	20	40	1.83
56957465--56957577	6	18.3	6	66	18	54	48	15	15	20	1.81
56957482--56957547	25	2.6	25	82	0	78	50	15	13	21	1.78
56957504--56957577	31	2.4	31	93	0	121	50	16	13	20	1.78
56957979--56958282	27	11.3	27	91	0	464	22	21	20	35	1.96
56958237--56958382	27	5.4	27	78	1	114	28	10	21	39	1.87
56958400--56958581	27	6.7	27	86	0	265	38	7	24	29	1.83
56958357--56958581	81	2.8	81	83	2	220	37	8	22	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56958593--56958743	27	5.6	27	77	12	130	29	8	21	40	1.83
56958601--56958742	54	2.7	52	81	4	151	29	8	21	40	1.83
56958589--56958742	81	1.9	82	80	6	179	29	8	22	39	1.83
56960743--56960784	21	2.0	21	85	0	57	42	11	21	23	1.86
56960768--56960827	31	1.9	31	96	0	111	46	13	18	21	1.83
56961229--56961532	27	11.3	27	92	0	482	22	21	21	34	1.96
56961487--56961642	27	5.8	27	78	1	116	28	10	20	40	1.86
56961518--56961641	54	2.3	53	80	5	133	28	8	20	42	1.80
56961243--56961586	81	4.2	80	86	5	451	24	19	21	35	1.96
56961650--56961833	27	6.8	27	87	0	278	40	8	22	28	1.83
56961650--56961833	54	3.4	54	95	0	314	40	8	22	28	1.83
56961843--56961993	27	5.6	27	76	14	116	28	9	21	40	1.84
56961851--56961992	54	2.7	52	77	8	135	28	9	21	40	1.84
56963482--56963579	27	3.6	27	70	10	83	37	21	9	31	1.85
56963564--56963678	27	4.3	27	85	6	153	35	20	20	23	1.96
56963820--56963850	16	1.9	16	93	0	53	29	19	16	35	1.93
56969777--56969851	23	3.3	23	78	10	75	33	18	24	24	1.97
56978714--56978919	40	5.2	40	89	1	290	23	20	27	28	1.99
56986606--56986736	41	3.4	38	79	17	146	22	19	29	28	1.98
56995842--56995946	47	2.2	47	93	0	174	35	6	30	27	1.83
57002287--57002599	27	11.6	27	88	2	405	39	19	9	31	1.83
57002287--57002644	54	6.6	54	83	3	353	38	19	9	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57002287--57002644	27	13.3	27	83	5	215	38	19	9	32	1.84
57002655--57002778	27	4.6	27	84	2	158	36	13	22	27	1.92
57002654--57002780	55	2.3	54	87	1	182	35	14	22	27	1.93
57002905--57002952	21	2.3	21	92	0	78	33	8	18	39	1.81
57004428--57004478	22	2.3	23	83	10	70	31	19	23	25	1.98
57004894--57005199	27	11.4	27	83	1	256	32	9	18	40	1.83
57004913--57005199	80	3.6	81	81	1	265	31	9	18	39	1.84
57005188--57005291	54	1.9	54	86	0	145	30	22	14	32	1.93
57005188--57005265	27	2.9	27	94	0	138	26	23	16	33	1.96
57005188--57005291	27	3.9	27	88	0	118	30	22	14	32	1.93
57007321--57007525	27	7.7	27	81	4	195	36	19	12	32	1.88
57007331--57007577	80	3.1	78	80	9	232	38	18	12	30	1.87
57007321--57007566	106	2.3	107	83	6	295	36	19	12	30	1.89
57007327--57007559	53	4.4	54	80	5	242	37	18	12	31	1.88
57007410--57007577	27	6.3	27	75	15	102	39	19	11	29	1.87
57010490--57010514	3	8.3	3	100	0	50	68	0	32	0	0.90
57012345--57012513	39	4.3	39	87	0	239	30	17	26	25	1.97
57015314--57015382	26	2.7	26	93	4	115	28	27	0	43	1.55
57015355--57015385	16	1.9	16	93	0	53	35	22	0	41	1.54
57015352--57015391	20	2.0	20	85	0	53	37	22	0	40	1.54
57015666--57015860	55	3.6	53	78	9	189	21	25	16	36	1.94
57032984--57033026	20	2.2	20	86	0	59	46	20	4	27	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57034128--57034213	44	2.0	44	83	4	111	25	30	22	22	1.99
57041778--57041949	67	2.6	66	81	7	170	31	16	29	22	1.96
57041802--57041985	67	2.8	64	78	8	203	28	16	30	23	1.96
57046203--57046374	67	2.6	66	81	7	170	31	16	29	22	1.96
57046227--57046410	67	2.8	64	78	8	203	28	16	30	23	1.96
57050561--57050619	23	2.6	23	76	12	68	33	16	22	27	1.95
57059549--57059601	11	5.0	11	75	9	56	32	22	13	32	1.92
57059541--57059601	21	2.9	21	87	4	88	34	21	11	32	1.89
57059638--57059686	25	2.0	25	91	0	80	28	14	22	34	1.93
57066934--57066980	24	2.0	24	83	8	60	27	23	19	29	1.98
57067028--57067072	21	2.1	21	95	0	81	37	17	11	33	1.85
57067037--57067088	21	2.5	21	87	0	68	32	25	11	30	1.91
57067125--57067173	25	2.0	25	87	0	71	28	12	22	36	1.90
57078222--57078256	8	4.4	8	100	0	70	40	37	0	22	1.55
57078706--57078734	12	2.3	13	94	5	51	27	20	0	51	1.47
57082605--57082919	39	8.1	39	92	0	522	23	28	26	21	1.99
57087312--57087342	15	2.1	15	93	0	53	54	25	0	19	1.44
57089848--57090071	40	5.7	40	86	6	287	25	27	21	24	1.99
57089848--57090071	118	1.9	120	83	7	296	25	27	21	24	1.99
57127596--57127706	41	2.8	41	85	10	149	26	16	27	29	1.97
57127596--57127731	41	3.4	39	80	11	125	26	16	26	30	1.96
57129106--57129284	85	2.1	85	95	0	331	37	8	26	26	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57131468--57132160	47	14.7	47	97	0	1253	32	8	29	29	1.87
57132279--57132355	36	2.1	36	88	4	111	24	19	29	25	1.98
57133564--57134176	39	15.5	39	91	2	913	22	21	29	26	1.99
57133564--57134197	236	2.7	238	94	1	1078	22	21	29	26	1.99
57133567--57134176	197	3.1	197	92	1	972	22	21	29	26	1.99
57133564--57134183	40	15.7	40	91	1	941	22	21	30	25	1.99
57135878--57136056	85	2.1	85	95	0	331	37	8	26	26	1.85
57138237--57138841	47	12.7	47	95	1	1014	32	8	29	29	1.87
57138284--57138362	25	3.3	25	61	10	65	32	5	29	32	1.79
57138960--57139037	36	2.1	37	88	2	113	25	19	29	25	1.98
57144887--57144950	19	3.3	19	70	12	67	37	1	26	34	1.66
57144904--57144965	20	3.2	20	68	13	65	35	3	25	35	1.72
57144887--57144965	39	2.0	39	100	0	158	35	2	26	35	1.70
57146397--57146456	24	2.5	24	86	10	79	38	16	18	26	1.92
57148644--57148758	31	3.8	31	88	2	171	30	24	15	29	1.96
57148784--57148873	42	2.1	42	95	0	162	34	18	14	32	1.91
57149021--57149090	25	2.8	25	91	4	106	25	22	27	24	2.00
57149985--57150246	27	9.8	26	79	7	224	31	8	19	40	1.82
57150098--57150246	52	2.8	52	88	8	214	29	8	20	42	1.80
57150071--57150246	27	6.7	26	85	7	230	29	7	19	43	1.78
57150274--57150448	54	3.2	54	89	1	253	39	6	23	30	1.81
57150274--57150471	81	2.4	81	85	3	256	38	7	22	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57150274--57150471	27	7.3	27	84	2	227	38	7	22	30	1.82
57150317--57150491	81	2.2	81	84	0	215	37	8	21	32	1.84
57152716--57152829	31	3.7	31	83	6	144	28	23	16	30	1.96
57152855--57152937	42	2.0	42	88	4	123	37	16	14	31	1.89
57153084--57153135	25	2.2	25	86	6	72	28	23	19	28	1.98
57153092--57153161	25	2.8	26	86	4	90	25	25	25	22	2.00
57156900--57157136	27	8.7	27	79	5	172	32	9	18	40	1.82
57156927--57157084	56	2.9	55	81	8	169	31	8	17	42	1.79
57156987--57157136	81	1.9	81	84	5	205	30	8	19	42	1.80
57157013--57157164	27	5.6	27	82	3	164	29	8	19	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290