genome.fa.s7.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  222  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72412688--72412930	40	6.1	39	76	12	122	24	20	27	26	1.99
72416798--72416970	46	3.8	45	74	11	172	22	19	27	30	1.98
72416795--72416965	93	1.8	93	91	2	281	22	19	28	29	1.98
72419511--72419775	94	2.8	92	75	15	283	24	29	18	27	1.98
72426616--72426782	46	3.6	46	73	12	151	23	27	20	28	1.99
72443777--72443941	90	1.8	90	84	2	224	28	18	24	27	1.98
72443781--72443959	48	3.9	48	68	12	140	26	18	26	27	1.98
72445278--72445407	66	2.0	66	87	0	188	46	29	1	23	1.61
72445451--72445503	22	2.3	23	87	3	72	37	47	0	15	1.45
72445476--72445513	14	2.7	14	87	0	58	39	47	2	10	1.52
72445371--72445500	65	2.0	66	81	4	156	44	33	0	21	1.53
72445806--72445864	7	8.0	7	90	3	73	59	0	0	40	0.97
72445805--72445857	8	6.9	8	95	4	92	62	0	0	37	0.96
72445790--72445859	15	4.6	15	83	3	86	68	0	0	31	0.90
72445952--72445994	9	4.4	9	80	13	50	81	0	0	18	0.69
72447248--72447289	7	6.0	7	94	0	75	42	26	0	30	1.55
72448693--72448989	23	12.9	23	76	5	192	32	6	22	38	1.79
72448696--72448951	114	2.2	114	78	7	268	33	5	22	38	1.78
72448858--72448989	70	1.9	69	81	4	158	36	5	20	37	1.75
72449449--72449495	19	2.5	19	76	10	51	21	2	4	72	1.12
72449416--72449507	31	3.0	30	75	19	91	28	4	2	65	1.23
72454210--72454381	93	1.8	93	93	0	299	27	29	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72454202--72454377	46	3.8	46	78	10	205	28	28	21	21	1.98
72456283--72456334	20	2.6	20	78	0	50	44	13	3	38	1.62
72461024--72461264	24	10.0	24	89	3	351	24	20	24	29	1.99
72461313--72461369	20	2.9	21	87	10	77	31	19	8	40	1.82
72461452--72461605	24	6.4	24	90	0	236	26	20	22	30	1.98
72461655--72461701	20	2.3	21	89	7	71	29	19	10	40	1.85
72461105--72461788	342	2.0	342	97	0	1296	29	21	16	32	1.96
72469457--72469648	24	8.0	24	89	1	269	27	20	22	29	1.99
72469698--72469792	20	4.8	20	93	5	151	33	18	9	37	1.84
72469698--72469773	11	7.5	11	71	16	74	32	19	10	36	1.86
72469710--72469762	9	5.4	9	75	16	52	35	20	7	35	1.81
72478987--72479051	28	2.3	28	91	0	103	32	27	7	32	1.85
72479157--72479245	27	3.2	28	84	10	121	20	24	23	31	1.98
72479157--72479264	54	2.0	54	83	7	139	19	25	21	34	1.96
72479695--72479735	18	2.3	18	86	0	55	24	2	4	68	1.22
72480597--72480623	5	5.4	5	100	0	54	81	0	0	18	0.69
72481013--72481139	43	3.0	43	79	4	141	30	25	18	24	1.98
72486569--72486648	29	2.8	28	81	7	99	27	35	13	23	1.93
72486569--72486648	28	2.8	28	81	7	99	27	35	13	23	1.93
72486873--72486909	16	2.2	17	95	4	67	16	18	10	54	1.71
72495166--72495282	45	2.6	45	88	0	171	24	18	27	29	1.98
72495187--72495329	45	3.3	43	77	12	132	26	17	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72497092--72497356	40	6.7	40	84	6	333	25	21	26	26	2.00
72497093--72497389	80	3.7	78	84	6	314	26	21	26	25	1.99
72497145--72497389	120	2.1	118	83	6	307	26	20	26	26	1.99
72500020--72500130	38	2.9	38	89	0	168	29	26	15	28	1.96
72502721--72502778	30	1.9	30	86	6	82	60	15	12	12	1.59
72502739--72502778	15	2.7	15	84	0	62	62	20	10	7	1.50
72509563--72509623	32	1.9	32	100	0	122	40	8	19	31	1.81
72519804--72519941	40	3.5	40	89	3	199	26	27	21	24	1.99
72523165--72523285	28	4.3	28	84	5	136	29	14	31	24	1.94
72525925--72525996	36	2.0	36	97	0	135	33	8	20	37	1.83
72527371--72527408	19	2.0	19	94	0	67	44	10	13	31	1.77
72537499--72537598	28	3.5	28	86	1	128	25	9	36	30	1.86
72542098--72542175	28	2.8	29	84	3	88	25	15	32	26	1.95
72542121--72542175	29	1.9	29	88	3	85	29	16	29	25	1.97
72546119--72546187	34	2.0	34	97	0	129	21	20	27	30	1.98
72547709--72547830	42	2.9	42	71	19	101	21	19	25	33	1.97
72556483--72556667	40	4.7	40	81	7	200	24	22	27	25	2.00
72556536--72556700	79	2.1	79	84	6	210	25	21	27	25	1.99
72559623--72559701	37	2.1	37	90	0	122	25	31	18	24	1.98
72559820--72560376	47	11.7	47	93	2	902	29	29	8	32	1.87
72559820--72560376	96	5.9	94	93	2	902	29	29	8	32	1.87
72564236--72564464	40	5.7	40	89	0	359	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72565680--72565758	37	2.1	37	90	0	122	25	31	18	24	1.98
72565877--72566245	47	7.7	47	93	2	578	28	30	9	32	1.88
72565877--72566223	192	1.8	190	94	1	613	28	29	9	32	1.88
72580510--72580613	55	1.9	55	82	7	131	17	26	30	25	1.97
72585189--72585233	13	3.5	13	87	0	63	17	28	31	22	1.97
72588230--72588422	29	6.8	29	80	8	200	26	31	13	28	1.94
72588231--72588454	57	3.9	57	77	10	206	25	32	13	28	1.94
72588225--72588454	86	2.7	85	87	0	316	26	32	13	27	1.94
72588231--72588461	29	8.1	28	74	11	150	26	31	13	29	1.94
72592828--72593016	29	6.6	29	77	3	186	26	31	13	27	1.94
72592828--72593040	57	3.7	57	76	7	191	26	30	13	29	1.94
72592828--72593046	86	2.6	86	85	0	278	26	30	13	29	1.94
72602504--72602608	47	2.2	47	89	0	165	27	29	7	35	1.85
72606139--72606180	21	2.0	20	86	4	57	42	21	0	35	1.53
72616550--72616590	20	2.1	20	95	4	75	21	34	9	34	1.87
72621657--72621687	9	3.4	9	95	0	53	22	19	9	48	1.78
72628417--72628458	20	2.1	20	90	0	66	47	7	9	35	1.64
72631638--72631748	6	17.8	6	71	14	82	48	14	17	19	1.81
72631643--72631713	19	3.8	18	81	10	81	45	15	19	19	1.86
72631640--72631748	31	3.3	31	83	11	101	48	14	16	20	1.81
72631619--72631676	25	2.3	25	93	0	98	46	10	22	20	1.81
72631638--72631726	37	2.4	37	84	0	124	46	14	19	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72631885--72631986	27	3.8	26	88	5	132	36	21	23	18	1.95
72632145--72632209	22	3.0	22	80	8	78	33	21	23	21	1.97
72632635--72632876	27	9.0	27	87	2	265	26	17	20	35	1.95
72632893--72633032	27	5.2	27	82	1	165	39	5	25	30	1.79
72632889--72633051	81	2.0	80	84	3	211	38	6	22	32	1.79
72632889--72633032	54	2.7	54	84	2	191	39	5	24	30	1.78
72633014--72633236	109	2.1	108	82	4	270	32	9	17	39	1.83
72633087--72633235	81	1.9	80	83	7	194	30	8	19	40	1.82
72633086--72633236	27	5.6	27	80	3	171	30	8	19	41	1.82
72636399--72636644	40	6.2	40	89	1	316	28	28	19	23	1.98
72638845--72638979	6	22.0	6	68	15	80	46	14	17	20	1.83
72638858--72638947	25	3.6	26	86	5	116	45	14	18	21	1.85
72638888--72638988	43	2.3	43	86	1	139	47	14	16	20	1.82
72638913--72639001	31	2.9	31	86	3	117	50	14	14	20	1.77
72639138--72639239	27	3.8	26	84	5	114	36	22	22	18	1.95
72639156--72639257	54	1.9	54	84	4	127	37	22	21	18	1.94
72639398--72639462	22	3.0	22	77	8	60	33	24	21	20	1.97
72639883--72640318	27	16.3	27	86	2	504	24	19	20	35	1.96
72640323--72640520	27	7.3	27	86	2	245	40	7	23	28	1.82
72640355--72640520	81	2.0	81	92	0	278	40	6	24	28	1.80
72640355--72640544	81	2.3	81	87	1	211	40	8	22	29	1.83
72640572--72640778	54	3.9	54	81	3	231	30	7	20	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72640574--72640778	27	7.6	27	82	6	195	30	7	20	41	1.80
72641869--72641971	27	3.8	27	69	5	82	35	26	8	29	1.86
72641956--72642425	27	17.3	27	84	4	543	35	17	20	26	1.94
72641956--72642021	33	2.0	34	93	3	116	37	16	16	28	1.91
72641990--72642424	81	5.4	81	86	2	599	35	17	21	25	1.94
72645519--72645720	47	4.5	47	76	13	235	30	15	22	31	1.95
72645613--72645753	38	3.5	38	73	22	133	30	14	25	29	1.95
72645557--72645758	85	2.4	85	96	0	368	30	15	23	30	1.95
72645694--72645770	38	2.0	38	94	0	136	31	15	24	28	1.96
72650635--72650718	31	2.7	31	85	1	116	30	15	27	26	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290