Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  96  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29398114--29398371
52
5.1
49
71
14
143
47
10
5
37
1.60
29398164--29398211
22
2.2
22
84
0
60
47
12
2
37
1.53
29398080--29398415
149
2.3
149
84
8
438
46
10
3
39
1.56
29398750--29398783
12
2.8
12
86
0
50
52
0
11
35
1.38
29399707--29399741
10
3.5
10
88
0
52
20
11
2
65
1.37
29400463--29400540
40
2.0
38
92
5
129
24
12
5
57
1.55
29408474--29408545
33
2.2
33
92
2
119
33
16
0
50
1.46
29410892--29410966
29
2.6
29
93
0
123
37
26
18
17
1.93
29415072--29415140
6
11.5
6
86
10
97
15
2
0
81
0.81
29416145--29416215
4
17.8
4
97
0
133
52
22
0
25
1.48
29419424--29419477
23
2.5
23
82
8
60
61
7
0
31
1.24
29419652--29419750
29
3.4
28
72
22
71
63
0
8
28
1.22
29419687--29419732
15
2.9
15
90
6
65
67
0
6
26
1.15
29419712--29419752
14
2.8
15
75
20
50
60
0
9
29
1.28
29419687--29419747
15
4.1
14
80
16
54
67
0
6
26
1.15
29423050--29423085
18
2.0
18
100
0
72
33
11
16
38
1.84
29429183--29429230
23
2.1
23
100
0
96
43
12
20
22
1.86
29436448--29436482
17
2.1
17
89
5
54
14
5
17
62
1.49
29443518--29443586
33
2.1
33
97
0
129
37
20
8
33
1.83
29444842--29445042
39
5.1
39
91
1
219
31
29
20
17
1.96
29444874--29445042
39
4.3
39
94
1
277
31
29
21
17
1.96
29445115--29445196
28
2.9
28
83
0
101
29
24
10
35
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29449344--29449376
5
6.6
5
100
0
66
81
0
0
18
0.68
29453789--29453815
14
1.9
14
100
0
54
81
0
0
18
0.69
29458273--29458303
14
2.2
14
94
0
53
77
0
9
12
0.99
29459558--29459827
88
3.1
88
86
0
353
23
23
19
33
1.97
29459769--29459908
70
2.0
70
87
2
201
25
18
21
34
1.96
29459874--29460106
44
5.3
44
67
17
160
17
24
25
32
1.97
29459839--29460367
88
6.1
88
90
2
739
20
23
23
33
1.97
29459594--29460345
245
3.0
245
82
8
913
21
22
21
33
1.97
29459918--29460150
44
5.3
44
66
15
167
19
23
23
33
1.97
29459962--29460191
44
5.2
44
62
22
106
18
25
23
33
1.97
29460674--29460925
126
2.0
127
92
0
416
37
21
14
26
1.92
29461539--29461609
29
2.5
29
75
6
74
56
2
4
36
1.34
29463128--29463933
177
4.5
177
90
0
1227
28
22
18
30
1.97
29463760--29463854
44
2.2
45
78
3
104
26
26
16
30
1.97
29468541--29468584
21
2.1
21
91
0
70
52
9
13
25
1.70
29481825--29481855
14
2.2
14
94
0
53
74
0
9
16
1.07
29498291--29498324
17
1.9
18
94
5
61
55
5
11
26
1.58
29499043--29499094
20
2.5
20
81
9
61
69
1
1
26
1.10
29499049--29499094
16
3.0
16
75
18
53
69
2
0
28
1.00
29500798--29500846
21
2.3
21
92
0
80
67
2
2
28
1.13
29504560--29504609
10
5.0
10
81
13
59
68
2
8
22
1.26
29508011--29508063
16
3.4
16
77
15
56
66
9
5
18
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29515517--29515559
22
2.0
22
86
9
61
37
2
4
55
1.33
29530885--29530915
15
2.0
16
93
6
55
54
0
0
45
0.99
29539523--29539573
25
2.0
25
88
0
75
43
5
13
37
1.69
29543842--29543892
25
2.0
25
88
0
75
41
5
15
37
1.72
29547687--29547750
18
3.6
18
75
12
69
71
1
6
20
1.15
29549026--29549247
3
77.0
3
70
12
74
22
4
2
70
1.16
29549023--29549049
14
1.9
14
100
0
54
29
7
0
62
1.22
29549051--29549103
1
53.0
1
80
0
61
9
0
0
90
0.45
29549052--29549139
9
9.2
9
85
10
106
14
3
0
81
0.81
29549210--29549247
14
2.6
15
83
8
60
31
5
2
60
1.33
29549284--29549362
25
3.2
25
74
15
67
31
3
1
63
1.20
29549303--29549359
17
3.6
16
73
23
50
33
5
1
59
1.30
29549588--29549626
18
2.2
17
86
4
51
23
0
2
74
0.94
29549682--29549802
3
40.3
3
71
9
86
28
6
0
64
1.24
29549700--29549798
42
2.4
42
83
8
130
27
7
1
64
1.26
29549682--29549802
54
2.2
56
83
12
155
28
6
0
64
1.24
29550094--29550144
16
3.4
16
73
13
54
45
0
0
54
0.99
29551363--29551676
46
6.8
46
90
0
403
21
22
14
41
1.89
29554523--29554642
51
2.4
51
87
5
163
39
12
22
25
1.89
29561243--29561292
16
3.1
17
80
8
59
42
0
0
58
0.98
29562186--29562305
51
2.4
51
88
2
170
40
12
21
25
1.89
29563960--29564018
10
5.7
10
81
15
66
20
3
0
76
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29563963--29564028
16
4.5
15
78
17
68
19
3
0
77
0.90
29566426--29566519
20
4.7
20
80
9
102
50
14
5
29
1.65
29566418--29566519
40
2.5
40
81
9
127
50
13
4
31
1.63
29567736--29567805
28
2.6
26
80
8
86
48
14
14
22
1.79
29569380--29569773
47
8.4
47
93
0
608
29
30
7
31
1.86
29569690--29569765
22
3.3
22
64
10
62
28
31
10
28
1.90
29573169--29573216
25
1.9
25
91
0
78
22
14
8
54
1.67
29580758--29580829
35
2.1
35
91
0
117
45
12
8
33
1.72
29583646--29583744
17
5.7
17
70
9
65
31
30
19
19
1.96
29586375--29586404
13
2.2
14
94
5
53
80
0
6
13
0.91
29586838--29586889
26
2.0
26
85
7
70
7
0
38
53
1.30
29586838--29586898
26
2.4
26
81
8
63
8
0
32
59
1.27
29587970--29588063
26
3.6
25
90
5
134
32
5
25
36
1.79
29588020--29588074
26
2.3
23
85
14
69
30
5
25
38
1.79
29589515--29589585
26
2.7
26
84
4
79
36
22
9
30
1.87
29589693--29589805
27
4.2
27
85
3
129
16
23
23
36
1.94
29589691--29589805
54
2.1
54
88
3
169
16
23
23
36
1.94
29589867--29589906
19
2.0
22
85
14
59
17
2
47
32
1.61
29591684--29591738
14
3.7
14
81
15
58
25
3
10
60
1.47
29592781--29592883
50
2.1
49
98
1
197
34
17
11
35
1.86
29599721--29599887
46
3.6
48
84
8
188
23
32
17
25
1.97
29601757--29601929
75
2.3
76
84
5
208
24
22
21
30
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29603865--29603908
21
2.0
22
86
4
63
36
20
0
43
1.52
29611205--29611249
22
2.1
21
87
4
63
64
4
8
22
1.40
29623469--29623551
44
1.9
42
85
4
112
31
6
10
51
1.61
29623520--29623588
33
2.1
34
89
8
106
34
10
8
46
1.69
29626535--29626581
18
2.6
17
83
12
58
34
0
0
65
0.93
29628512--29628699
59
3.2
57
85
6
229
32
6
7
52
1.56
29628883--29629010
67
2.0
64
87
7
186
42
20
1
35
1.61
29630613--29630673
27
2.3
27
88
0
86
19
26
36
18
1.94
29630799--29630872
3
25.0
3
88
2
114
66
0
29
4
1.10
29631662--29631737
30
2.8
25
76
17
80
68
3
3
23
1.23
29631510--29632170
154
4.4
152
88
5
948
59
7
5
28
1.46
29632122--29632173
12
4.1
12
79
13
59
71
0
1
26
0.97
29642231--29642352
45
2.7
45
81
3
149
24
14
27
32
1.95
29652848--29653082
32
7.3
32
75
8
163
28
14
40
16
1.87
29652911--29653001
34
2.7
34
85
0
110
29
15
36
18
1.92
29652925--29652984
18
3.4
18
75
9
52
31
16
33
18
1.93
29652835--29653064
16
14.2
16
70
11
130
29
13
40
16
1.88
29652943--29653098
48
3.2
48
80
8
156
28
13
41
17
1.87
29653069--29653099
16
1.9
16
93
0
53
32
16
38
12
1.86
29654476--29654531
16
3.4
16
79
13
53
64
0
3
32
1.11
29654513--29654550
20
1.9
20
88
0
58
52
0
2
44
1.14
29654521--29654630
51
2.1
51
79
11
118
53
1
4
40
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29654601--29654644
21
2.1
21
87
4
63
54
4
4
36
1.41
29654873--29654985
19
5.8
19
78
9
102
38
6
0
54
1.31
29654894--29655022
19
6.6
19
75
9
98
39
5
1
53
1.33
29654873--29654986
20
5.8
20
80
6
108
37
6
0
55
1.31
29659369--29659399
16
1.9
16
93
0
53
38
0
29
32
1.57
29659385--29659481
49
1.9
51
83
8
128
30
4
28
36
1.76
29659577--29659736
57
2.7
58
80
13
175
53
4
0
41
1.25
29659706--29659755
24
2.1
23
82
10
57
60
2
2
36
1.20
29660742--29660877
43
3.2
43
90
0
209
26
19
28
25
1.99
29660930--29661009
31
2.5
31
83
2
97
61
17
3
17
1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290