Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  34  of  290  ( 34756 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10996162--10996190
11
2.6
11
100
0
58
34
0
0
65
0.93
10996183--10996213
13
2.4
13
100
0
62
45
0
6
48
1.28
10998353--10998468
61
1.9
60
84
10
157
35
15
11
37
1.83
11001207--11001241
18
1.9
18
88
0
52
8
28
20
42
1.81
11002761--11002932
95
1.8
92
81
6
211
39
16
9
34
1.81
11003090--11003138
20
2.5
19
84
12
64
55
4
0
40
1.19
11003316--11003421
10
11.1
9
69
20
56
29
3
0
66
1.16
11003331--11003443
9
12.2
9
72
11
77
27
4
0
67
1.16
11003332--11003491
9
17.6
8
69
20
61
28
3
0
66
1.13
11003334--11003432
45
2.2
46
85
10
134
29
5
1
64
1.21
11003379--11003475
19
5.1
19
74
15
83
31
1
1
65
1.06
11003333--11003437
28
3.8
27
73
10
70
28
4
0
65
1.19
11009978--11010037
10
6.0
10
86
7
86
21
6
1
70
1.20
11022019--11022083
4
16.2
4
80
0
76
23
3
4
69
1.21
11022021--11022083
16
3.9
16
91
0
99
23
3
4
68
1.24
11025143--11025207
32
2.0
32
100
0
130
50
15
9
24
1.73
11036744--11036768
4
6.2
4
100
0
50
52
24
0
24
1.48
11036476--11036931
234
2.0
227
93
3
788
43
17
13
25
1.86
11042738--11042865
68
1.9
68
86
3
186
18
23
10
46
1.80
11053805--11053875
27
2.6
27
84
0
88
29
5
46
18
1.72
11053847--11053871
12
2.1
12
100
0
50
24
8
52
16
1.70
11056162--11056196
4
8.8
4
93
0
52
71
28
0
0
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11059804--11059838
18
2.0
18
88
5
54
17
5
20
57
1.60
11074809--11074841
15
2.2
16
89
10
52
45
0
0
54
0.99
11075113--11075139
2
13.5
2
100
0
54
48
0
0
51
1.00
11077987--11078027
21
2.0
21
90
0
64
19
29
21
29
1.98
11082921--11083011
44
2.1
44
89
0
137
48
10
10
29
1.73
11084672--11084717
20
2.2
21
84
3
67
50
26
17
6
1.70
11088311--11088566
131
2.0
131
92
0
422
28
17
18
35
1.94
11099615--11099664
25
2.0
24
88
3
73
24
26
18
32
1.97
11101487--11101533
24
2.0
24
100
0
94
21
12
17
48
1.79
11107708--11107788
31
2.6
31
92
0
126
39
13
7
39
1.73
11111705--11111736
14
2.3
14
94
0
55
34
0
0
65
0.93
11120236--11120292
23
2.5
22
78
10
62
21
3
0
75
0.95
11138768--11138810
22
2.0
22
85
0
59
58
11
11
18
1.63
11138775--11138815
11
3.7
11
80
0
55
56
9
14
19
1.66
11139431--11139463
17
1.9
17
93
0
57
39
6
3
51
1.42
11140016--11140083
16
4.2
16
96
0
127
25
0
35
39
1.56
11140418--11140469
15
3.6
15
80
12
56
53
1
0
44
1.11
11140302--11140598
59
5.0
58
66
18
164
50
4
3
41
1.38
11140302--11140594
120
2.4
121
93
1
491
50
4
3
41
1.39
11143270--11143304
8
4.5
8
85
7
54
85
2
11
0
0.69
11143273--11143302
15
1.9
16
93
6
53
83
3
13
0
0.77
11150460--11150512
29
2.0
29
85
14
78
58
1
0
39
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11153390--11153431
20
2.2
19
86
4
57
54
26
0
19
1.44
11153400--11153437
19
2.0
20
84
5
51
44
36
0
18
1.50
11155097--11155138
21
2.0
21
85
0
57
38
9
7
45
1.64
11155319--11155386
11
6.0
11
72
13
57
33
0
8
57
1.30
11155318--11155405
27
3.2
28
75
9
67
35
1
6
56
1.33
11159641--11159692
4
13.0
4
100
0
104
25
25
0
50
1.50
11168528--11168640
28
3.9
28
74
18
88
28
26
18
26
1.98
11176249--11176282
14
2.4
14
95
0
59
17
17
5
58
1.57
11176189--11176403
89
2.5
84
84
10
276
28
15
19
36
1.92
11176350--11176478
54
2.4
54
88
3
190
31
13
15
39
1.87
11176470--11176655
89
2.1
90
83
5
234
32
18
16
32
1.93
11176919--11177177
37
7.2
37
90
6
408
38
11
26
23
1.88
11176924--11177027
21
5.4
21
60
21
57
39
12
25
22
1.89
11176919--11177177
140
1.9
140
94
0
464
38
11
26
23
1.88
11176952--11177153
103
2.0
103
96
0
377
38
11
26
23
1.89
11177688--11177725
17
2.2
17
90
0
58
23
52
13
10
1.71
11179101--11179142
21
2.0
21
85
0
57
38
9
7
45
1.64
11183323--11183357
2
17.5
2
100
0
70
51
0
48
0
1.00
11186686--11186711
3
8.7
3
100
0
52
69
0
30
0
0.89
11205071--11205196
45
2.8
45
85
2
173
28
21
22
27
1.99
11205341--11205678
45
7.6
45
75
6
233
31
17
23
27
1.97
11205340--11205681
134
2.6
132
83
3
407
30
18
23
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11205162--11205706
180
3.0
177
79
8
430
31
17
22
28
1.97
11205384--11206124
268
2.8
268
83
4
692
32
17
20
29
1.96
11205785--11205951
46
3.7
46
77
6
169
34
18
19
27
1.95
11205853--11206393
179
3.0
178
84
1
690
32
18
18
30
1.95
11206707--11206761
27
2.0
27
100
0
110
45
36
7
10
1.67
11206746--11206780
16
2.1
17
89
5
54
48
42
0
8
1.33
11207850--11207884
15
2.2
16
90
5
54
31
0
0
68
0.90
11208054--11208091
15
2.6
16
84
16
55
23
13
0
63
1.30
11212390--11212444
27
2.0
28
85
3
76
45
5
16
32
1.70
11212453--11212479
10
2.7
10
100
0
54
51
7
0
40
1.30
11214006--11214049
19
2.3
20
80
11
56
11
0
11
77
1.00
11214641--11214674
14
2.4
14
100
0
68
44
5
29
20
1.75
11217998--11218047
18
2.7
18
81
3
64
82
0
0
18
0.68
11217998--11218046
5
10.6
5
85
14
54
81
0
0
18
0.69
11217998--11218046
14
3.6
14
84
15
59
81
0
0
18
0.69
11222600--11222695
45
2.1
45
84
3
122
51
15
25
8
1.71
11222643--11222695
15
3.5
15
76
0
52
50
16
24
7
1.71
11223087--11223136
26
2.0
24
88
7
73
30
0
6
64
1.18
11224382--11224462
41
2.0
41
87
0
117
25
34
20
18
1.96
11237509--11237587
36
2.2
36
100
0
158
43
34
3
18
1.69
11238647--11238683
3
12.0
3
88
5
56
32
2
0
64
1.07
11238638--11238691
22
2.4
22
79
14
74
31
7
0
61
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11238650--11238682
16
2.1
16
94
0
57
30
3
0
66
1.06
11239040--11239081
16
2.7
15
80
20
50
21
2
7
69
1.25
11239126--11239173
24
1.9
26
84
16
66
35
0
6
58
1.23
11239217--11239255
21
1.9
20
89
5
60
23
2
10
64
1.37
11251550--11252016
47
9.7
47
89
6
679
32
8
29
29
1.87
11251736--11252016
103
2.8
101
90
4
414
33
8
29
28
1.87
11251699--11251980
150
1.9
150
94
0
501
32
9
28
29
1.88
11252135--11252213
37
2.1
37
88
0
113
25
18
30
25
1.98
11254696--11254733
3
12.7
3
100
0
76
65
0
34
0
0.93
11255718--11255752
14
2.5
14
95
0
61
17
17
5
60
1.55
11255574--11255965
86
4.5
87
82
4
434
28
17
17
35
1.93
11255578--11255965
175
2.2
175
84
5
500
29
17
17
35
1.93
11256104--11256347
85
3.0
80
73
6
195
25
17
19
37
1.93
11258089--11258121
3
11.0
3
93
0
57
33
3
0
63
1.10
11258297--11258357
21
2.7
23
75
12
65
32
3
6
57
1.41
11258657--11258695
21
1.9
20
89
5
60
23
2
10
64
1.37
11266147--11266340
43
4.5
43
71
11
144
35
20
21
23
1.96
11266092--11266258
86
1.9
86
83
7
214
38
20
19
21
1.94
11266102--11266340
130
1.8
130
89
0
379
36
20
21
22
1.95
11266196--11266409
87
2.4
86
84
3
293
34
18
23
23
1.96
11266101--11266390
43
6.7
43
68
12
128
35
20
22
21
1.96
11266603--11266685
42
2.0
42
85
0
112
28
21
25
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11266615--11266706
42
2.2
42
84
0
112
34
20
21
22
1.96
11268231--11268479
41
6.1
40
87
1
246
35
19
23
22
1.96
11268262--11268482
81
2.7
82
85
2
257
33
19
23
22
1.97
11268521--11268592
37
1.9
37
85
0
99
45
33
0
20
1.52
11268705--11268768
7
9.0
7
77
3
56
23
3
26
46
1.67
11268721--11268771
15
3.5
15
81
2
59
21
1
29
47
1.62
11269360--11269413
7
7.6
7
97
2
99
61
0
0
38
0.96
11269360--11269448
21
4.0
22
80
4
92
62
1
0
35
1.02
11269360--11269453
22
4.3
22
80
2
118
60
1
0
38
1.04
11269360--11269441
14
5.6
14
83
4
92
64
1
0
34
1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290