genome.fa.s7.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  186  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59742692--59742747	11	5.5	11	71	16	57	35	12	19	32	1.89
59742681--59742747	20	3.3	20	93	0	116	34	11	20	32	1.90
59742796--59743040	24	10.0	24	84	4	285	29	21	20	28	1.98
59742796--59743040	74	3.3	72	83	6	287	29	21	20	28	1.98
59742797--59743026	98	2.3	98	91	0	361	30	20	20	28	1.98
59750119--59750206	6	14.3	6	73	17	74	48	15	17	18	1.81
59750128--59750206	19	4.3	18	73	17	72	49	15	17	17	1.80
59750128--59750206	31	2.5	31	91	0	122	49	15	17	17	1.80
59750591--59750730	27	5.2	27	83	10	162	27	20	16	35	1.94
59750589--59750730	54	2.6	54	83	8	189	27	19	17	35	1.95
59750588--59750757	81	2.1	81	79	10	197	28	18	17	35	1.94
59750712--59750839	54	2.4	54	80	5	143	28	9	21	39	1.85
59750712--59750840	27	4.8	27	79	3	116	28	9	21	40	1.84
59750735--59750881	54	2.7	54	81	5	154	31	6	22	38	1.80
59750795--59750854	27	2.2	27	87	0	84	31	6	21	40	1.79
59750833--59750919	27	3.2	27	95	0	147	37	4	22	34	1.75
59750935--59750997	26	2.4	27	81	7	76	33	7	22	36	1.83
59752954--59753035	6	13.3	6	73	19	71	47	15	18	18	1.83
59752963--59753032	25	2.8	25	81	14	83	47	15	20	17	1.83
59752963--59753035	31	2.4	31	90	0	119	47	15	19	17	1.82
59753418--59753551	54	2.5	54	92	0	214	25	20	18	35	1.95
59753418--59753559	27	5.3	27	85	1	178	25	19	19	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59753517--59753614	27	3.6	27	86	5	101	26	11	23	38	1.88
59753419--59753586	81	2.1	81	84	6	216	26	17	19	36	1.94
59753418--59753586	54	3.1	54	85	5	173	26	17	19	36	1.94
59753542--59753668	54	2.4	54	82	2	148	28	7	23	40	1.82
59753432--59753613	81	2.2	81	81	7	201	27	15	20	36	1.93
59753542--59753669	27	4.7	27	81	3	123	28	7	23	40	1.82
59753571--59753683	27	4.2	27	78	4	111	27	7	23	41	1.80
59753579--59753748	54	3.2	53	81	5	162	32	6	24	37	1.81
59753662--59753748	27	3.2	27	91	0	147	36	4	25	33	1.76
59753755--59753841	27	3.2	27	80	6	104	28	9	20	41	1.83
59763796--59763966	93	1.8	93	94	0	306	30	27	20	21	1.98
59763788--59763963	46	3.8	46	77	12	198	31	27	19	21	1.97
59763839--59763975	47	3.0	46	71	20	124	31	27	18	22	1.97
59771525--59771831	9	34.6	9	80	5	288	35	0	17	46	1.52
59771795--59771859	27	2.4	27	80	7	69	30	0	27	41	1.56
59772350--59772393	5	8.6	5	95	5	79	81	0	0	18	0.68
59772350--59772393	21	2.1	21	100	0	88	81	0	0	18	0.68
59789880--59789909	15	2.0	15	100	0	60	33	20	13	33	1.91
59792023--59792064	18	2.3	19	88	12	70	14	21	40	23	1.90
59794469--59794508	10	3.9	10	87	6	62	30	20	20	30	1.97
59794548--59794597	25	2.0	25	92	0	82	26	18	24	32	1.97
59799098--59799152	6	9.0	6	76	11	58	49	14	16	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59799071--59799152	37	2.2	37	84	4	103	47	13	18	20	1.82
59799271--59799330	27	2.3	26	85	2	75	36	20	21	21	1.95
59799292--59799355	33	2.0	32	84	3	83	35	20	23	20	1.96
59799591--59799803	54	4.1	54	78	9	219	42	7	21	28	1.79
59799636--59799724	46	2.0	45	84	2	115	43	4	23	28	1.73
59799591--59799679	27	3.3	27	87	0	124	42	6	22	28	1.79
59799682--59799803	27	4.5	26	78	10	102	43	7	20	28	1.79
59799617--59799758	73	1.9	73	84	5	189	44	7	21	26	1.78
59799591--59799779	100	1.9	100	87	4	283	43	6	21	28	1.77
59799809--59799874	27	2.4	27	87	0	105	31	12	19	36	1.89
59799809--59799897	27	3.3	27	82	4	81	30	10	21	38	1.86
59799853--59800007	54	2.9	54	81	7	154	30	8	21	39	1.83
59799873--59800031	27	6.0	26	82	4	167	30	8	21	39	1.82
59799792--59800031	82	3.0	79	79	9	216	30	9	21	38	1.85
59799881--59800031	54	2.8	53	86	3	205	29	7	21	41	1.82
59799852--59800031	81	2.2	80	81	9	206	30	8	21	39	1.84
59802006--59802060	6	9.0	6	80	11	67	49	16	16	18	1.81
59801979--59802060	37	2.2	37	86	4	112	47	14	18	19	1.82
59802179--59802259	27	3.0	26	80	7	72	37	20	20	20	1.95
59802494--59802588	27	3.5	27	86	0	136	40	6	25	28	1.80
59802494--59802703	54	4.1	53	79	10	227	41	7	22	28	1.80
59802539--59802627	46	2.0	45	86	2	124	42	4	24	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59802585--59802706	27	4.5	26	78	10	102	43	7	20	28	1.79
59802520--59802661	73	1.9	73	84	2	187	42	7	23	26	1.79
59802494--59802682	100	1.9	100	89	0	297	42	6	22	28	1.78
59802686--59802932	27	9.2	27	81	7	202	29	10	20	39	1.85
59802717--59802776	26	2.3	26	88	2	93	31	13	20	35	1.91
59802755--59802932	54	3.3	54	85	3	225	29	9	20	41	1.84
59802699--59802932	81	2.9	80	79	6	231	29	10	21	39	1.86
59807973--59808150	27	6.6	27	81	5	171	28	27	16	27	1.97
59807994--59808149	82	1.9	81	85	3	215	28	27	16	27	1.97
59816081--59816258	27	6.6	27	82	5	171	29	27	15	27	1.96
59816102--59816257	82	1.9	81	84	3	206	29	27	15	27	1.96
59825495--59825678	79	2.3	80	80	9	207	25	28	22	24	1.99
59825476--59825678	40	5.1	40	80	9	220	24	28	22	25	1.99
59830051--59830402	47	7.4	47	93	2	578	32	8	29	28	1.87
59830055--59830402	96	3.6	96	94	0	592	32	8	29	29	1.88
59830051--59830402	143	2.5	143	92	2	577	32	8	29	28	1.87
59830521--59830599	37	2.1	37	88	4	115	25	18	30	25	1.98
59838258--59838324	33	2.0	33	100	0	134	26	25	23	23	2.00
59838300--59838400	39	2.6	39	87	1	139	26	29	19	23	1.98
59838297--59838458	40	4.1	40	78	10	152	26	27	20	24	1.99
59838297--59838458	79	2.0	81	81	7	188	26	27	20	24	1.99
59838947--59839025	38	2.1	38	97	0	149	26	2	17	53	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59842760--59842859	37	2.7	37	96	0	182	24	33	19	24	1.97
59843003--59843436	48	9.0	48	94	0	733	31	26	6	35	1.82
59848343--59848381	20	2.0	20	90	10	62	17	33	17	30	1.94
59852798--59852971	27	6.4	27	83	4	197	27	14	27	29	1.96
59852799--59852954	82	1.9	81	88	3	233	26	15	28	29	1.96
59857437--59857487	27	1.9	26	84	4	66	35	19	27	17	1.94
59861050--59861253	27	7.6	27	84	4	223	27	14	27	29	1.95
59873327--59873586	96	2.7	97	93	3	436	35	21	23	18	1.96
59875984--59876108	37	3.4	37	78	0	133	32	26	15	25	1.95
59876040--59876118	37	2.1	37	83	0	95	35	30	16	17	1.92
59883634--59883697	27	2.4	28	82	10	71	26	15	17	40	1.89
59883916--59883958	17	2.4	17	80	7	50	23	44	23	9	1.82
59886995--59887170	46	3.8	45	81	10	212	21	21	29	28	1.98
59886991--59887162	93	1.8	93	94	0	308	20	21	30	27	1.98
59891936--59892111	46	3.8	46	77	4	192	21	19	27	30	1.98
59891934--59892103	93	1.8	93	92	0	286	21	20	27	30	1.98
59895434--59895482	23	2.1	23	100	0	98	55	0	14	30	1.40
59909137--59909308	93	1.8	93	91	0	281	29	29	20	20	1.98
59909129--59909304	46	3.8	46	77	10	187	30	28	19	21	1.98
59916031--59916362	48	6.9	47	78	4	340	25	28	18	27	1.98
59916029--59916362	96	3.5	96	91	0	515	26	28	18	27	1.98
59916031--59916361	144	2.3	144	82	3	380	25	28	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59918719--59918940	40	5.6	40	88	1	322	28	26	22	23	1.99
59925989--59926208	40	5.6	40	87	3	313	28	25	22	23	1.99
59925989--59926208	79	2.8	80	89	4	315	28	25	22	23	1.99
59933274--59933535	40	6.6	40	87	1	366	29	25	21	23	1.99
59950739--59950988	125	2.0	125	100	0	500	31	22	11	35	1.89
59957432--59957758	48	6.8	48	77	4	347	26	28	17	27	1.98
59957441--59957758	96	3.3	95	87	3	444	26	28	17	27	1.97
59974605--59974666	30	2.1	30	93	0	106	37	20	14	27	1.92
59978310--59978371	33	1.9	32	83	3	79	20	24	20	33	1.97
59990838--59991008	93	1.8	93	92	0	288	30	28	19	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290