genome.fa.s7.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Length:  92880876

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   

This is table  137  of  290  ( 34756 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43207504--43207551	22	2.2	22	88	0	69	43	4	12	39	1.62
43207452--43207615	86	1.9	86	86	2	231	41	1	15	40	1.58
43207521--43207660	28	4.7	29	75	14	97	41	2	17	39	1.61
43207522--43207641	28	3.9	30	76	13	111	40	2	18	38	1.64
43207704--43208079	126	3.0	126	91	1	610	37	17	16	29	1.91
43211868--43211985	42	2.8	42	79	13	134	29	25	19	25	1.98
43211868--43212032	43	3.8	43	77	10	151	30	23	20	25	1.99
43215344--43215435	24	3.8	24	91	0	130	33	30	14	21	1.93
43225228--43225327	41	2.4	42	83	12	134	64	3	1	32	1.16
43227994--43228047	21	2.6	21	81	0	63	37	1	24	37	1.66
43228821--43229023	87	2.4	81	81	5	226	21	9	17	51	1.74
43229587--43229614	12	2.3	12	100	0	56	7	0	14	78	0.95
43229696--43229758	30	2.1	30	90	0	99	22	1	15	60	1.44
43232013--43232061	25	1.9	25	83	4	62	48	16	4	30	1.64
43238225--43238353	50	2.5	51	91	2	206	34	17	23	25	1.96
43238329--43238439	31	3.6	31	88	3	170	27	18	27	27	1.98
43241169--43241392	42	5.0	42	83	9	211	29	28	14	27	1.95
43241239--43241392	48	3.2	48	89	1	245	30	29	13	25	1.94
43243362--43243391	10	2.8	11	90	10	53	53	26	0	20	1.46
43244231--43244336	36	2.7	40	72	18	96	36	22	15	25	1.93
43244231--43244344	41	2.9	40	72	16	103	35	23	14	26	1.94
43244776--43244825	19	2.6	19	78	6	57	2	26	4	68	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43244854--43244962	5	21.8	5	96	0	200	58	0	0	39	1.10
43244944--43245028	42	1.9	45	83	11	113	42	3	1	52	1.26
43246995--43247071	5	15.8	5	71	24	58	40	0	2	57	1.13
43247011--43247065	8	6.2	8	84	15	65	40	0	1	58	1.09
43247926--43247968	18	2.3	19	88	11	63	37	0	25	37	1.56
43251844--43251880	18	2.1	18	94	0	65	48	24	5	21	1.71
43251869--43251898	10	2.8	11	90	10	53	53	26	0	20	1.46
43251873--43251905	10	3.3	10	91	8	50	57	24	0	18	1.40
43254104--43254153	25	2.0	25	96	0	91	38	20	8	34	1.82
43254323--43254583	72	3.6	72	84	4	289	32	27	16	23	1.96
43254869--43254911	19	2.3	19	96	4	79	48	16	4	30	1.66
43256836--43256912	37	2.1	37	97	0	145	12	28	2	55	1.51
43258182--43258343	33	4.8	33	68	10	96	27	23	17	32	1.97
43261781--43262314	250	2.1	249	84	1	685	42	11	11	33	1.79
43263468--43263520	26	2.0	26	82	7	63	26	15	20	37	1.92
43265006--43265165	26	6.2	26	88	1	223	36	22	6	34	1.79
43265016--43265165	52	2.9	52	95	0	264	36	22	6	35	1.79
43265999--43266240	118	2.1	118	96	0	450	42	6	14	36	1.71
43272388--43272437	26	1.9	26	100	0	100	36	30	10	24	1.88
43272920--43272965	20	2.3	20	96	0	83	41	8	10	39	1.71
43275676--43275740	28	2.5	26	78	11	73	40	1	3	55	1.25
43278761--43278803	22	2.0	22	86	9	61	62	6	0	30	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43285415--43285638	46	4.8	48	78	8	226	29	19	27	24	1.98
43285415--43285638	94	2.4	94	87	1	297	29	19	27	24	1.98
43285656--43285783	49	2.6	49	86	3	168	26	21	30	21	1.98
43288580--43288751	93	1.8	93	92	0	290	27	29	22	20	1.98
43288572--43288747	46	3.8	46	80	4	210	28	28	21	21	1.98
43288623--43288766	46	3.1	45	72	15	123	29	29	20	20	1.98
43292080--43292208	38	3.4	38	87	4	179	20	20	24	33	1.97
43299925--43300098	48	3.7	47	82	5	208	29	17	26	25	1.98
43299925--43300098	94	1.8	95	87	3	262	29	17	26	25	1.98
43300116--43300245	49	2.6	50	80	4	156	28	21	27	22	1.99
43299978--43300241	142	1.9	139	82	7	336	28	19	27	24	1.99
43302807--43302841	17	2.1	17	100	0	70	22	20	22	34	1.97
43307679--43308171	69	7.2	69	80	3	467	35	23	20	20	1.96
43307677--43308171	138	3.6	138	80	3	516	35	23	20	20	1.96
43307679--43308130	207	2.2	207	82	3	547	35	24	19	20	1.96
43314072--43314135	28	2.2	28	88	2	92	26	15	31	26	1.96
43314057--43314135	29	2.8	28	81	9	97	25	16	32	25	1.96
43317266--43317350	31	2.7	31	79	0	89	23	31	34	10	1.89
43320999--43321041	16	2.6	17	77	7	52	58	6	4	30	1.45
43329165--43329236	37	2.0	34	81	7	81	5	37	1	55	1.32
43329302--43329334	15	2.1	16	88	5	50	48	27	15	9	1.74
43330410--43330521	27	4.2	26	81	12	127	17	24	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43330410--43330521	54	2.1	54	86	3	154	17	24	21	36	1.95
43339287--43339322	18	2.1	18	89	5	56	27	13	13	44	1.82
43340537--43340616	29	2.8	28	83	7	99	27	35	15	22	1.94
43340841--43340871	16	1.9	16	100	0	62	9	19	19	51	1.74
43349650--43349785	50	2.7	50	94	0	245	19	13	31	36	1.90
43364514--43364747	48	5.1	48	77	9	159	31	22	15	30	1.95
43364491--43364739	43	5.5	44	76	11	193	30	24	15	29	1.96
43382369--43382673	96	3.2	96	91	2	501	28	30	8	32	1.87
43382369--43382667	143	2.1	141	91	1	472	28	30	8	32	1.87
43382369--43382667	47	6.3	47	91	1	472	28	30	8	32	1.87
43388280--43388490	105	2.0	105	96	0	386	26	29	25	19	1.98
43390042--43390103	28	2.2	28	85	0	79	25	20	19	33	1.96
43393973--43394068	43	2.2	43	79	3	104	30	27	15	27	1.96
43395562--43395623	31	2.0	31	90	3	99	24	24	14	37	1.93
43395817--43395888	25	2.9	24	86	12	85	26	25	20	27	1.99
43395939--43396005	20	3.3	20	87	0	98	31	20	14	32	1.93
43409989--43410018	12	2.5	12	94	0	51	13	10	6	70	1.34
43433399--43433438	21	1.9	21	84	0	53	25	15	20	40	1.90
43434672--43434826	43	3.7	43	77	6	181	23	18	27	30	1.97
43437212--43437251	21	1.9	21	94	0	71	25	15	17	42	1.88
43462821--43462878	30	1.9	31	82	6	75	27	24	5	43	1.75
43479192--43479226	17	2.1	17	94	0	61	31	25	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43482822--43482971	43	3.4	43	81	4	165	28	25	17	28	1.97
43482847--43482974	43	3.0	43	83	1	166	26	25	18	29	1.98
43488751--43488870	43	2.9	41	79	7	134	30	25	18	25	1.98
43492310--43492367	28	2.1	28	96	0	107	29	13	13	43	1.83
43496532--43496649	43	2.7	43	78	7	123	27	30	17	23	1.97
43498153--43498299	43	3.4	43	81	13	135	31	26	19	23	1.98
43502629--43502740	27	4.2	26	85	7	143	37	23	23	16	1.93
43502629--43502740	54	2.1	54	88	3	163	37	23	23	16	1.93
43519533--43519598	29	2.3	29	84	7	82	27	16	28	27	1.97
43523811--43523854	16	2.8	15	83	10	61	47	22	20	9	1.78
43524060--43524170	58	1.9	57	87	1	159	25	15	31	27	1.95
43524047--43524158	29	3.9	28	80	9	127	25	14	31	28	1.95
43527137--43527200	28	2.3	27	84	7	85	37	26	7	28	1.84
43535109--43535333	49	4.5	49	87	2	279	29	26	17	25	1.98
43535107--43535340	101	2.3	100	84	3	303	29	27	17	25	1.98
43535384--43535429	23	2.0	23	95	0	83	26	28	13	32	1.93
43537923--43537970	19	2.5	19	96	0	87	33	10	31	25	1.89
43538069--43538134	28	2.4	28	89	2	107	34	27	10	27	1.90
43538235--43538350	27	4.3	26	84	7	124	19	20	21	37	1.94
43540275--43540510	94	2.5	96	81	6	293	28	20	25	25	1.99
43540333--43540506	48	3.7	47	77	9	156	28	20	25	25	1.99
43543200--43543375	50	3.5	49	87	3	235	26	18	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43554542--43554573	6	5.3	6	100	0	64	46	15	18	18	1.84
43555473--43555505	16	2.1	16	94	0	57	9	6	6	78	1.08
43555527--43555563	18	2.1	17	90	5	56	48	0	0	51	1.00
43588041--43588151	27	4.2	26	83	5	132	37	23	22	16	1.93
43594643--43594753	27	4.2	26	87	7	143	36	21	24	17	1.94
43596163--43596215	24	2.2	24	93	0	88	20	43	1	33	1.63
43597206--43597246	12	3.3	12	93	3	64	17	21	0	60	1.35
43597206--43597246	18	2.2	19	83	12	50	17	21	0	60	1.35
43604621--43604776	43	3.6	43	87	0	222	28	30	17	23	1.97
43607882--43607927	23	2.0	23	100	0	92	34	30	8	26	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290